Wall clock time and date at job start Tue Mar 31 2020 19:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46897 * 109.47437 * 2 1 4 4 C 1.47018 * 111.00054 * 293.95751 * 3 2 1 5 5 C 1.53094 * 109.29630 * 177.58396 * 4 3 2 6 6 O 1.43108 * 109.20973 * 56.82513 * 5 4 3 7 7 C 1.43023 * 113.76243 * 301.35702 * 6 5 4 8 8 H 1.08991 * 109.53940 * 298.71225 * 7 6 5 9 9 C 1.50692 * 109.50473 * 178.60528 * 7 6 5 10 10 O 1.21286 * 120.00655 * 339.04653 * 9 7 6 11 11 N 1.34955 * 120.00061 * 159.05461 * 9 7 6 12 12 C 1.44784 * 120.05997 * 4.46431 * 11 9 7 13 13 C 1.51416 * 113.14222 * 267.87252 * 12 11 9 14 14 C 1.51218 * 114.19317 * 296.16984 * 13 12 11 15 15 H 1.09736 * 110.66957 * 178.67442 * 14 13 12 16 16 C 1.54124 * 108.49976 * 300.59664 * 14 13 12 17 17 C 1.53987 * 104.83947 * 92.93532 * 16 14 13 18 18 C 1.52076 * 105.55923 * 11.31855 * 17 16 14 19 19 H 1.09403 * 108.34218 * 123.33842 * 18 17 16 20 20 C 1.49300 * 120.03611 * 184.07869 * 11 9 7 21 21 N 1.47754 * 109.50847 * 5.49048 * 18 17 16 22 22 C 1.37147 * 127.10004 * 158.83448 * 21 18 17 23 23 H 1.07996 * 119.99867 * 180.48867 * 22 21 18 24 24 C 1.38815 * 119.99650 * 0.47988 * 22 21 18 25 25 N 1.31617 * 120.00385 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 119.99617 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47148 * 90.00310 * 26 24 22 28 28 H 1.48503 * 109.47317 * 209.99819 * 26 24 22 29 29 H 1.48498 * 109.47448 * 330.00011 * 26 24 22 30 30 C 1.47009 * 111.00463 * 170.31913 * 3 2 1 31 31 H 1.09003 * 109.47096 * 300.00188 * 1 2 3 32 32 H 1.08995 * 109.46981 * 59.99762 * 1 2 3 33 33 H 1.09000 * 109.47104 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.47096 * 239.99812 * 2 1 3 35 35 H 1.09000 * 109.47385 * 120.00015 * 2 1 3 36 36 H 1.09005 * 109.50177 * 297.54274 * 4 3 2 37 37 H 1.09001 * 109.50885 * 57.62349 * 4 3 2 38 38 H 1.08994 * 109.50667 * 176.80120 * 5 4 3 39 39 H 1.09002 * 109.50868 * 296.93336 * 5 4 3 40 40 H 1.09365 * 108.43453 * 28.32004 * 12 11 9 41 41 H 1.08888 * 109.19678 * 145.90639 * 12 11 9 42 42 H 1.09164 * 108.79012 * 57.83705 * 13 12 11 43 43 H 1.09312 * 108.49730 * 174.96579 * 13 12 11 44 44 H 1.09372 * 110.54865 * 211.98900 * 16 14 13 45 45 H 1.09305 * 110.71064 * 333.65369 * 16 14 13 46 46 H 1.09076 * 110.66852 * 251.73022 * 17 16 14 47 47 H 1.09295 * 110.28343 * 130.20568 * 17 16 14 48 48 H 1.09108 * 109.51672 * 254.72541 * 20 11 9 49 49 H 1.09118 * 109.53125 * 14.45557 * 20 11 9 50 50 H 0.97002 * 120.00233 * 180.02562 * 25 24 22 51 51 H 1.09006 * 109.50753 * 302.32841 * 30 3 2 52 52 H 1.09001 * 109.50665 * 62.45526 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6700 2.0675 -1.2543 5 6 2.1445 3.5215 -1.1884 6 8 3.5522 3.5462 -0.9318 7 6 3.9282 2.8909 0.2826 8 1 3.4555 3.3906 1.1280 9 6 5.4260 2.9438 0.4399 10 8 6.1315 3.1289 -0.5291 11 7 5.9824 2.7852 1.6591 12 6 5.1500 2.4682 2.8005 13 6 4.6807 3.6950 3.5538 14 6 5.7949 4.4965 4.1884 15 1 5.3937 5.3820 4.6974 16 6 6.5491 3.5871 5.1781 17 6 7.7105 2.9922 4.3606 18 6 7.7451 3.7858 3.0638 19 1 8.7423 4.2220 2.9536 20 6 7.4586 2.9279 1.8312 21 7 6.7635 4.8880 3.1335 22 6 6.7554 6.0371 2.3850 23 1 5.9819 6.7752 2.5372 24 6 7.7416 6.2516 1.4320 25 7 8.6842 5.3519 1.2463 26 14 7.7310 7.8171 0.4130 27 1 8.5223 8.8648 1.1069 28 1 8.3299 7.5452 -0.9185 29 1 6.3326 8.2860 0.2403 30 6 3.4709 1.4307 0.2308 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 2.1552 1.5637 -2.0903 37 1 0.5890 2.0433 -1.3927 38 1 1.9378 4.0152 -2.1378 39 1 1.6193 4.0398 -0.3860 40 1 4.2719 1.9205 2.4468 41 1 5.7032 1.8197 3.4780 42 1 4.1314 4.3410 2.8663 43 1 3.9903 3.3766 4.3393 44 1 6.9332 4.1708 6.0195 45 1 5.8950 2.7942 5.5499 46 1 7.5362 1.9349 4.1571 47 1 8.6537 3.1124 4.8996 48 1 7.9076 1.9419 1.9595 49 1 7.8846 3.4038 0.9465 50 1 9.3735 5.5019 0.5805 51 1 3.7046 0.9424 1.1769 52 1 3.9850 0.9168 -0.5815 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045894146.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:12 Heat of formation + Delta-G solvation = -22.568103 kcal Electronic energy + Delta-G solvation = -32933.843256 eV Core-core repulsion = 28934.932512 eV Total energy + Delta-G solvation = -3998.910744 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.28312 -39.11495 -37.53960 -36.03279 -34.26911 -32.85612 -31.90782 -31.28793 -30.90779 -29.31229 -27.59263 -26.60866 -25.53392 -24.41590 -23.69887 -22.81244 -21.72330 -20.45985 -19.68375 -19.18381 -18.35305 -17.06923 -16.54565 -16.35600 -16.02423 -15.47359 -15.22424 -14.96566 -14.68413 -14.41882 -14.30186 -14.05540 -13.88150 -13.63102 -13.48409 -12.86552 -12.78109 -12.43710 -12.26557 -12.16288 -11.98058 -11.82758 -11.78522 -11.55587 -11.41079 -11.26239 -11.10881 -10.99808 -10.79320 -10.72044 -10.70018 -10.58933 -10.09949 -9.83645 -9.57522 -9.56339 -9.49686 -9.40087 -8.83102 -8.56015 -8.52348 -7.64482 -6.77740 -5.61735 -2.98856 3.15497 3.46308 3.48705 3.55308 3.58147 3.79590 4.30556 4.57248 4.69406 4.82844 4.87562 4.96577 5.09804 5.14826 5.23132 5.24205 5.28381 5.33404 5.40106 5.46555 5.52442 5.52900 5.62433 5.67943 5.69863 5.74110 5.76639 5.79995 5.89272 5.90230 5.96712 5.98693 6.14369 6.23420 6.29087 6.43994 6.49679 6.61829 6.71541 6.75581 6.79905 6.83507 7.01217 7.07910 7.22789 7.38089 7.58764 7.72115 7.92845 8.34476 8.36370 9.05498 9.27619 9.87578 10.55889 11.45850 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012847 B = 0.004717 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.969092 B = 5934.632878 C = 7142.531862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.050 3.950 3 N -0.535 5.535 4 C 0.014 3.986 5 C 0.061 3.939 6 O -0.354 6.354 7 C 0.081 3.919 8 H 0.086 0.914 9 C 0.525 3.475 10 O -0.521 6.521 11 N -0.578 5.578 12 C 0.117 3.883 13 C -0.149 4.149 14 C 0.155 3.845 15 H 0.056 0.944 16 C -0.125 4.125 17 C -0.130 4.130 18 C 0.156 3.844 19 H 0.104 0.896 20 C 0.117 3.883 21 N -0.578 5.578 22 C -0.216 4.216 23 H 0.075 0.925 24 C 0.000 4.000 25 N -0.914 5.914 26 Si 0.911 3.089 27 H -0.292 1.292 28 H -0.290 1.290 29 H -0.284 1.284 30 C 0.030 3.970 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.034 0.966 35 H 0.076 0.924 36 H 0.043 0.957 37 H 0.088 0.912 38 H 0.100 0.900 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.069 0.931 42 H 0.055 0.945 43 H 0.053 0.947 44 H 0.056 0.944 45 H 0.058 0.942 46 H 0.054 0.946 47 H 0.056 0.944 48 H 0.026 0.974 49 H 0.126 0.874 50 H 0.253 0.747 51 H 0.092 0.908 52 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.627 -11.516 2.937 18.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.078 4.078 3 N -0.261 5.261 4 C -0.114 4.114 5 C -0.016 4.016 6 O -0.271 6.271 7 C 0.019 3.981 8 H 0.104 0.896 9 C 0.309 3.691 10 O -0.396 6.396 11 N -0.311 5.311 12 C -0.008 4.008 13 C -0.190 4.190 14 C 0.047 3.953 15 H 0.074 0.926 16 C -0.164 4.164 17 C -0.168 4.168 18 C 0.048 3.952 19 H 0.121 0.879 20 C -0.005 4.005 21 N -0.301 5.301 22 C -0.344 4.344 23 H 0.093 0.907 24 C -0.196 4.196 25 N -0.562 5.562 26 Si 0.742 3.258 27 H -0.219 1.219 28 H -0.216 1.216 29 H -0.210 1.210 30 C -0.098 4.098 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.052 0.948 35 H 0.095 0.905 36 H 0.061 0.939 37 H 0.106 0.894 38 H 0.118 0.882 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.087 0.913 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.073 0.927 47 H 0.075 0.925 48 H 0.044 0.956 49 H 0.143 0.857 50 H 0.063 0.937 51 H 0.110 0.890 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -13.191 -10.926 2.473 17.306 hybrid contribution -0.074 0.192 -0.977 0.998 sum -13.265 -10.734 1.496 17.129 Atomic orbital electron populations 1.21792 0.94658 1.01546 1.02551 1.22099 0.96192 0.88499 1.01014 1.62262 1.13091 1.16131 1.34581 1.22875 1.01565 0.96153 0.90769 1.22713 0.82269 0.94668 1.01943 1.88179 1.22317 1.76563 1.40081 1.22057 0.94594 0.92311 0.89142 0.89614 1.19713 0.88011 0.77587 0.83783 1.90673 1.62944 1.47555 1.38422 1.47911 1.08989 1.68684 1.05548 1.20803 0.94275 0.96619 0.89082 1.22052 0.99588 0.97920 0.99463 1.20983 0.90306 0.94256 0.89750 0.92636 1.22488 0.97471 0.98566 0.97872 1.22232 0.97809 0.98730 0.98061 1.21038 0.97716 0.87539 0.88871 0.87881 1.23325 0.76055 0.96603 1.04503 1.44830 1.26369 1.18479 1.40394 1.18925 1.08956 0.93851 1.12650 0.90720 1.24609 0.97730 0.98296 0.98980 1.69658 1.16034 1.33744 1.36751 0.86124 0.77348 0.82514 0.79793 1.21943 1.21614 1.20970 1.22726 0.87852 0.96876 1.02390 0.91690 0.92691 0.92260 0.94799 0.90541 0.93854 0.89404 0.88205 0.92231 0.92402 0.91288 0.92663 0.92822 0.92545 0.92353 0.92710 0.92516 0.95630 0.85674 0.93689 0.88983 0.93378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.84 37.16 0.37 -0.78 16 2 C 0.05 0.48 5.68 -3.83 -0.02 0.45 16 3 N -0.54 -6.49 4.73 -234.31 -1.11 -7.59 16 4 C 0.01 0.17 5.43 -3.71 -0.02 0.15 16 5 C 0.06 0.84 7.02 37.21 0.26 1.10 16 6 O -0.35 -6.82 10.09 -54.17 -0.55 -7.37 16 7 C 0.08 1.46 2.37 -27.84 -0.07 1.39 16 8 H 0.09 1.52 6.24 -51.93 -0.32 1.19 16 9 C 0.52 11.68 6.95 -10.91 -0.08 11.60 16 10 O -0.52 -14.08 16.09 -13.39 -0.22 -14.30 16 11 N -0.58 -11.87 2.55 -173.49 -0.44 -12.31 16 12 C 0.12 1.90 4.58 -5.76 -0.03 1.87 16 13 C -0.15 -2.50 4.92 -28.43 -0.14 -2.64 16 14 C 0.15 2.95 3.81 -67.16 -0.26 2.69 16 15 H 0.06 1.07 8.20 -51.51 -0.42 0.65 16 16 C -0.13 -2.01 5.99 -25.63 -0.15 -2.16 16 17 C -0.13 -2.27 5.74 -26.69 -0.15 -2.42 16 18 C 0.16 3.47 2.29 -67.77 -0.16 3.31 16 19 H 0.10 2.68 6.25 -51.70 -0.32 2.36 16 20 C 0.12 2.65 5.70 -2.55 -0.01 2.64 16 21 N -0.58 -13.77 2.35 -156.14 -0.37 -14.14 16 22 C -0.22 -5.89 10.37 -14.96 -0.16 -6.04 16 23 H 0.07 2.03 7.83 -52.49 -0.41 1.61 16 24 C 0.00 0.00 5.49 -17.43 -0.10 -0.10 16 25 N -0.91 -26.10 8.23 55.49 0.46 -25.64 16 26 Si 0.91 23.22 29.55 -169.99 -5.02 18.20 16 27 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 28 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 29 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 30 C 0.03 0.43 4.67 -3.71 -0.02 0.41 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.41 6.50 -51.93 -0.34 0.08 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.03 0.33 8.12 -51.93 -0.42 -0.09 16 35 H 0.08 0.68 8.04 -51.93 -0.42 0.26 16 36 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.09 0.81 6.37 -51.93 -0.33 0.48 16 38 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.81 4.53 -51.72 -0.23 0.58 16 41 H 0.07 1.03 5.64 -51.99 -0.29 0.74 16 42 H 0.05 1.04 7.14 -51.84 -0.37 0.67 16 43 H 0.05 0.73 8.14 -51.75 -0.42 0.31 16 44 H 0.06 0.88 8.17 -51.72 -0.42 0.46 16 45 H 0.06 0.78 7.67 -51.76 -0.40 0.38 16 46 H 0.05 0.86 6.53 -51.89 -0.34 0.52 16 47 H 0.06 0.95 8.17 -51.76 -0.42 0.53 16 48 H 0.03 0.52 7.86 -51.87 -0.41 0.12 16 49 H 0.13 3.43 5.11 -51.86 -0.26 3.17 16 50 H 0.25 7.22 8.31 -40.82 -0.34 6.89 16 51 H 0.09 1.19 6.04 -51.93 -0.31 0.87 16 52 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 375.49 15.07 5.66 5.66 Total: -1.00 -32.75 375.49 -10.86 -43.61 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -8.55 Total: 2.40 kcal Atomic # 6 Polarization: 12.20 SS G_CDS: -0.72 Total: 11.48 kcal Atomic # 7 Polarization: -58.22 SS G_CDS: -1.46 Total: -59.68 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.76 Total: -21.67 kcal Atomic # 14 Polarization: 23.22 SS G_CDS: -5.02 Total: 18.20 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.75 -10.86 -43.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045894146.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.044 kcal (2) G-P(sol) polarization free energy of solvation -32.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds