Wall clock time and date at job start Tue Mar 31 2020 19:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46907 * 109.47099 * 2 1 4 4 C 1.47016 * 111.00066 * 293.95479 * 3 2 1 5 5 C 1.53098 * 109.25980 * 182.39284 * 4 3 2 6 6 O 1.43010 * 109.25784 * 303.15251 * 5 4 3 7 7 C 1.43017 * 113.74115 * 58.66573 * 6 5 4 8 8 H 1.09000 * 109.50378 * 61.31015 * 7 6 5 9 9 C 1.50702 * 109.50981 * 181.39612 * 7 6 5 10 10 O 1.21275 * 119.99952 * 10.14150 * 9 7 6 11 11 N 1.35008 * 119.99712 * 190.14841 * 9 7 6 12 12 C 1.44761 * 119.95967 * 175.46545 * 11 9 7 13 13 C 1.51417 * 113.18297 * 267.08760 * 12 11 9 14 14 C 1.51226 * 114.15247 * 294.98551 * 13 12 11 15 15 H 1.09657 * 110.75626 * 179.41035 * 14 13 12 16 16 C 1.54129 * 108.48295 * 301.47745 * 14 13 12 17 17 C 1.54015 * 104.70977 * 91.87192 * 16 14 13 18 18 C 1.52081 * 105.51492 * 12.30300 * 17 16 14 19 19 H 1.09431 * 108.24697 * 122.47815 * 18 17 16 20 20 C 1.49250 * 119.94682 * 355.04122 * 11 9 7 21 21 N 1.47746 * 109.55564 * 4.71455 * 18 17 16 22 22 C 1.37117 * 127.16070 * 159.13651 * 21 18 17 23 23 H 1.08000 * 120.00286 * 180.02562 * 22 21 18 24 24 C 1.38811 * 119.99977 * 0.02562 * 22 21 18 25 25 N 1.31621 * 120.00394 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99834 * 180.02562 * 24 22 21 27 27 H 1.48505 * 109.47449 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.46986 * 120.00470 * 26 24 22 29 29 H 1.48502 * 109.47467 * 240.00309 * 26 24 22 30 30 C 1.47013 * 110.99740 * 57.63285 * 3 2 1 31 31 H 1.08999 * 109.47269 * 59.99803 * 1 2 3 32 32 H 1.08994 * 109.46953 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46635 * 300.00075 * 1 2 3 34 34 H 1.08993 * 109.47102 * 240.00196 * 2 1 3 35 35 H 1.08998 * 109.47078 * 119.99684 * 2 1 3 36 36 H 1.09004 * 109.50709 * 62.45364 * 4 3 2 37 37 H 1.09008 * 109.50507 * 302.33090 * 4 3 2 38 38 H 1.08998 * 109.50372 * 183.21566 * 5 4 3 39 39 H 1.08997 * 109.50310 * 63.08316 * 5 4 3 40 40 H 1.08854 * 109.28333 * 144.97087 * 12 11 9 41 41 H 1.09408 * 108.37545 * 27.46425 * 12 11 9 42 42 H 1.09184 * 108.78043 * 56.59276 * 13 12 11 43 43 H 1.09291 * 108.52618 * 173.76998 * 13 12 11 44 44 H 1.09286 * 110.70637 * 332.65325 * 16 14 13 45 45 H 1.09342 * 110.58890 * 210.89563 * 16 14 13 46 46 H 1.09041 * 110.67270 * 252.67923 * 17 16 14 47 47 H 1.09292 * 110.25497 * 131.22106 * 17 16 14 48 48 H 1.09120 * 109.56945 * 257.14271 * 20 11 9 49 49 H 1.09165 * 109.47223 * 16.75921 * 20 11 9 50 50 H 0.96991 * 120.00181 * 180.02562 * 25 24 22 51 51 H 1.09004 * 109.54218 * 57.69799 * 30 3 2 52 52 H 1.09000 * 109.47774 * 297.56595 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.6699 2.0676 -1.2543 5 6 2.2493 3.4846 -1.2367 6 8 1.7596 4.1801 -0.0871 7 6 2.0827 3.5434 1.1521 8 1 3.1658 3.4938 1.2641 9 6 1.4946 4.3338 2.2925 10 8 0.7119 5.2324 2.0673 11 7 1.8393 4.0416 3.5647 12 6 1.3515 4.8628 4.6526 13 6 2.3039 5.9773 5.0315 14 6 3.6232 5.4990 5.5951 15 1 4.2719 6.3485 5.8401 16 6 3.3389 4.6425 6.8446 17 6 3.2372 3.1999 6.3150 18 6 3.7653 3.2516 4.8898 19 1 4.6016 2.5505 4.8086 20 6 2.7149 2.8667 3.8483 21 7 4.2716 4.6088 4.5989 22 6 5.1602 4.9689 3.6187 23 1 5.4532 6.0025 3.5086 24 6 5.6832 4.0049 2.7678 25 7 5.3258 2.7452 2.9015 26 14 6.8943 4.4954 1.4329 27 1 7.1307 5.9603 1.4928 28 1 8.1779 3.7784 1.6413 29 1 6.3376 4.1375 0.1035 30 6 1.5026 2.1266 1.1593 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 0.5854 2.1188 -1.3506 37 1 2.0850 1.5150 -2.0973 38 1 1.9443 4.0136 -2.1395 39 1 3.3372 3.4325 -1.1945 40 1 1.1671 4.2347 5.5223 41 1 0.3997 5.3083 4.3485 42 1 2.5009 6.5871 4.1475 43 1 1.8170 6.6120 5.7761 44 1 2.4008 4.9461 7.3160 45 1 4.1573 4.7291 7.5645 46 1 2.2021 2.8573 6.3276 47 1 3.8529 2.5302 6.9207 48 1 2.1088 2.0422 4.2271 49 1 3.2112 2.5522 2.9282 50 1 5.6916 2.0716 2.3072 51 1 1.7956 1.6180 2.0778 52 1 0.4153 2.1783 1.1021 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045894147.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:19 Heat of formation + Delta-G solvation = -24.199672 kcal Electronic energy + Delta-G solvation = -33563.434845 eV Core-core repulsion = 29564.453351 eV Total energy + Delta-G solvation = -3998.981495 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -40.21352 -39.12141 -37.63006 -35.95697 -33.95621 -33.23885 -31.85699 -30.95800 -30.55832 -29.41173 -27.48645 -26.50241 -25.55117 -24.37685 -23.80941 -22.88221 -21.81760 -19.95380 -19.61833 -19.26558 -18.23880 -17.21948 -16.55954 -15.91419 -15.75849 -15.25960 -15.06206 -14.87977 -14.77385 -14.70410 -14.12102 -13.93288 -13.83071 -13.72231 -13.25034 -12.82773 -12.49564 -12.45479 -12.35069 -12.24519 -11.93718 -11.85050 -11.54305 -11.43180 -11.31389 -11.15732 -11.09860 -10.88807 -10.84413 -10.74923 -10.72461 -10.38628 -10.15918 -9.91932 -9.66335 -9.55658 -9.44590 -9.27109 -8.92190 -8.66127 -8.19378 -7.73200 -6.88959 -5.75481 -3.11800 3.23676 3.37849 3.46220 3.46400 3.55393 3.96838 4.39216 4.48795 4.93047 5.01187 5.13634 5.17452 5.24581 5.29545 5.33167 5.37173 5.37874 5.49165 5.52920 5.60788 5.63547 5.70016 5.74374 5.78154 5.83627 5.89758 5.92143 5.99180 6.02951 6.03996 6.15409 6.18545 6.21609 6.28033 6.33704 6.40601 6.53484 6.64047 6.70881 6.79103 6.86301 7.05389 7.06829 7.09483 7.29010 7.33330 7.53293 7.62307 7.72755 8.19565 8.22733 8.97060 9.15987 9.73363 10.44621 11.31991 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010915 B = 0.005883 C = 0.004899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2564.582021 B = 4758.208871 C = 5713.953567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.052 3.948 3 N -0.527 5.527 4 C 0.016 3.984 5 C 0.062 3.938 6 O -0.362 6.362 7 C 0.077 3.923 8 H 0.115 0.885 9 C 0.531 3.469 10 O -0.551 6.551 11 N -0.578 5.578 12 C 0.130 3.870 13 C -0.144 4.144 14 C 0.153 3.847 15 H 0.056 0.944 16 C -0.125 4.125 17 C -0.130 4.130 18 C 0.157 3.843 19 H 0.107 0.893 20 C 0.096 3.904 21 N -0.580 5.580 22 C -0.200 4.200 23 H 0.077 0.923 24 C -0.010 4.010 25 N -0.922 5.922 26 Si 0.905 3.095 27 H -0.283 1.283 28 H -0.292 1.292 29 H -0.289 1.289 30 C 0.031 3.969 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.043 0.957 37 H 0.083 0.917 38 H 0.097 0.903 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.057 0.943 43 H 0.052 0.948 44 H 0.059 0.941 45 H 0.056 0.944 46 H 0.055 0.945 47 H 0.057 0.943 48 H 0.030 0.970 49 H 0.126 0.874 50 H 0.254 0.746 51 H 0.098 0.902 52 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.257 -5.731 -0.458 9.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.076 4.076 3 N -0.251 5.251 4 C -0.113 4.113 5 C -0.016 4.016 6 O -0.280 6.280 7 C 0.016 3.984 8 H 0.132 0.868 9 C 0.318 3.682 10 O -0.430 6.430 11 N -0.310 5.310 12 C 0.007 3.993 13 C -0.185 4.185 14 C 0.046 3.954 15 H 0.075 0.925 16 C -0.164 4.164 17 C -0.168 4.168 18 C 0.050 3.950 19 H 0.124 0.876 20 C -0.026 4.026 21 N -0.302 5.302 22 C -0.328 4.328 23 H 0.095 0.905 24 C -0.205 4.205 25 N -0.572 5.572 26 Si 0.736 3.264 27 H -0.208 1.208 28 H -0.219 1.219 29 H -0.216 1.216 30 C -0.097 4.097 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.061 0.939 37 H 0.101 0.899 38 H 0.115 0.885 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.077 0.923 45 H 0.075 0.925 46 H 0.074 0.926 47 H 0.076 0.924 48 H 0.048 0.952 49 H 0.144 0.856 50 H 0.064 0.936 51 H 0.116 0.884 52 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -7.074 -5.163 -0.735 8.788 hybrid contribution -0.109 -0.022 -0.816 0.824 sum -7.182 -5.185 -1.551 8.993 Atomic orbital electron populations 1.22453 0.98451 1.02130 1.02213 1.22168 0.92658 0.89728 1.03062 1.62379 1.58772 1.02042 1.01926 1.22826 0.99149 0.96249 0.93034 1.22668 0.98979 0.90985 0.88928 1.88041 1.78120 1.48859 1.12941 1.22044 1.02018 0.90088 0.84250 0.86794 1.19900 0.80868 0.83754 0.83689 1.90602 1.35574 1.32535 1.84270 1.47909 1.49071 1.29603 1.04422 1.20467 0.96475 0.92977 0.89405 1.21942 0.97819 0.97952 1.00813 1.21052 0.91817 0.93466 0.89071 0.92546 1.22481 1.00220 0.96063 0.97647 1.22226 0.99896 0.96308 0.98415 1.20989 0.95785 0.90143 0.88130 0.87597 1.23683 0.90332 0.83866 1.04743 1.44882 1.49263 1.01589 1.34457 1.19111 1.14916 0.93511 1.05306 0.90523 1.24589 1.00834 0.95555 0.99489 1.69663 1.47162 0.99717 1.40664 0.86120 0.80884 0.77507 0.81842 1.20820 1.21884 1.21630 1.22781 0.97615 0.94124 0.95228 0.92656 0.92123 0.92259 0.90681 0.90169 0.93884 0.89867 0.88545 0.92102 0.91730 0.91816 0.92441 0.92987 0.92279 0.92500 0.92650 0.92434 0.95173 0.85630 0.93550 0.88438 0.93941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.13 9.20 37.16 0.34 -1.78 16 2 C 0.05 0.63 6.10 -3.82 -0.02 0.60 16 3 N -0.53 -8.06 4.93 -234.29 -1.16 -9.22 16 4 C 0.02 0.22 5.33 -3.71 -0.02 0.20 16 5 C 0.06 1.00 7.01 37.21 0.26 1.26 16 6 O -0.36 -7.54 10.02 -54.90 -0.55 -8.09 16 7 C 0.08 1.60 2.37 -27.83 -0.07 1.53 16 8 H 0.11 2.69 7.17 -51.93 -0.37 2.32 16 9 C 0.53 11.90 7.06 -10.88 -0.08 11.83 16 10 O -0.55 -13.82 15.99 -14.11 -0.23 -14.05 16 11 N -0.58 -11.80 2.60 -173.53 -0.45 -12.25 16 12 C 0.13 2.43 5.05 -5.77 -0.03 2.40 16 13 C -0.14 -2.70 5.03 -28.43 -0.14 -2.84 16 14 C 0.15 2.97 3.83 -67.13 -0.26 2.71 16 15 H 0.06 1.10 8.20 -51.56 -0.42 0.68 16 16 C -0.13 -2.03 5.99 -25.61 -0.15 -2.18 16 17 C -0.13 -2.19 5.73 -26.67 -0.15 -2.34 16 18 C 0.16 3.24 2.28 -67.80 -0.15 3.09 16 19 H 0.11 2.52 6.26 -51.68 -0.32 2.20 16 20 C 0.10 1.92 4.25 -2.60 -0.01 1.91 16 21 N -0.58 -13.20 2.39 -156.15 -0.37 -13.57 16 22 C -0.20 -5.14 10.37 -14.98 -0.16 -5.29 16 23 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 24 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 25 N -0.92 -23.02 8.23 55.49 0.46 -22.56 16 26 Si 0.91 21.26 29.55 -169.99 -5.02 16.24 16 27 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 28 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 29 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 30 C 0.03 0.53 4.05 -3.71 -0.02 0.51 16 31 H 0.05 0.61 6.61 -51.93 -0.34 0.27 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.72 6.42 -51.93 -0.33 0.38 16 34 H 0.07 0.80 8.11 -51.93 -0.42 0.38 16 35 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.04 0.59 6.59 -51.93 -0.34 0.25 16 37 H 0.08 0.97 8.12 -51.92 -0.42 0.55 16 38 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.06 1.06 5.47 -52.01 -0.28 0.78 16 41 H 0.06 1.22 7.21 -51.70 -0.37 0.84 16 42 H 0.06 1.25 8.16 -51.83 -0.42 0.83 16 43 H 0.05 0.82 8.15 -51.76 -0.42 0.40 16 44 H 0.06 0.83 7.69 -51.77 -0.40 0.43 16 45 H 0.06 0.88 8.17 -51.74 -0.42 0.46 16 46 H 0.05 0.85 6.43 -51.91 -0.33 0.51 16 47 H 0.06 0.92 8.17 -51.76 -0.42 0.49 16 48 H 0.03 0.53 7.80 -51.86 -0.40 0.13 16 49 H 0.13 2.73 2.98 -51.84 -0.15 2.58 16 50 H 0.25 6.34 8.31 -40.82 -0.34 6.00 16 51 H 0.10 1.66 5.72 -51.93 -0.30 1.37 16 52 H 0.04 0.73 6.40 -51.93 -0.33 0.40 16 LS Contribution 372.69 15.07 5.62 5.62 Total: -1.00 -29.02 372.69 -10.94 -39.96 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -8.48 Total: 6.68 kcal Atomic # 6 Polarization: 11.99 SS G_CDS: -0.75 Total: 11.24 kcal Atomic # 7 Polarization: -56.07 SS G_CDS: -1.52 Total: -57.60 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.78 Total: -22.14 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.02 -10.94 -39.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045894147.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.758 kcal (2) G-P(sol) polarization free energy of solvation -29.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds