Wall clock time and date at job start Tue Mar 31 2020 19:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46899 * 109.47376 * 2 1 4 4 C 1.47013 * 111.00324 * 75.81401 * 3 2 1 5 5 C 1.53096 * 109.26047 * 182.39447 * 4 3 2 6 6 O 1.43018 * 109.25820 * 303.15405 * 5 4 3 7 7 C 1.43020 * 113.74034 * 58.66694 * 6 5 4 8 8 C 1.47015 * 111.00278 * 199.45454 * 3 2 1 9 9 H 1.09006 * 109.50016 * 297.54074 * 8 3 2 10 10 C 1.50694 * 109.50764 * 57.66507 * 8 3 2 11 11 O 1.21285 * 119.99901 * 25.02158 * 10 8 3 12 12 N 1.34776 * 120.00538 * 205.01590 * 10 8 3 13 13 C 1.46801 * 119.57109 * 4.51054 * 12 10 8 14 14 C 1.53038 * 107.82427 * 232.01682 * 13 12 10 15 15 C 1.52739 * 108.52197 * 302.14653 * 14 13 12 16 16 C 1.53012 * 110.80290 * 63.65166 * 15 14 13 17 17 H 1.08994 * 111.38774 * 68.75796 * 16 15 14 18 18 C 1.45115 * 119.58075 * 184.79116 * 12 10 8 19 19 H 1.08998 * 109.97225 * 11.91165 * 18 12 10 20 20 C 1.54421 * 111.60519 * 248.62972 * 18 12 10 21 21 C 1.54566 * 102.44987 * 203.42371 * 20 18 12 22 22 N 1.47117 * 107.25423 * 21.66682 * 21 20 18 23 23 C 1.36938 * 125.76933 * 182.62425 * 22 21 20 24 24 H 1.07998 * 120.00200 * 174.62457 * 23 22 21 25 25 C 1.38818 * 119.99716 * 354.61763 * 23 22 21 26 26 N 1.31612 * 120.00107 * 5.30116 * 25 23 22 27 27 Si 1.86804 * 119.99660 * 185.29943 * 25 23 22 28 28 H 1.48495 * 109.47037 * 94.99983 * 27 25 23 29 29 H 1.48502 * 109.46736 * 214.99947 * 27 25 23 30 30 H 1.48493 * 109.47231 * 334.99754 * 27 25 23 31 31 H 1.08999 * 109.46716 * 300.00454 * 1 2 3 32 32 H 1.08996 * 109.46824 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.46947 * 60.00023 * 1 2 3 34 34 H 1.09002 * 109.46804 * 119.99513 * 2 1 3 35 35 H 1.09002 * 109.47437 * 239.99568 * 2 1 3 36 36 H 1.08997 * 109.50536 * 302.33161 * 4 3 2 37 37 H 1.09002 * 109.50454 * 62.41540 * 4 3 2 38 38 H 1.09004 * 109.50718 * 63.08750 * 5 4 3 39 39 H 1.08998 * 109.50967 * 183.17291 * 5 4 3 40 40 H 1.09002 * 109.50540 * 61.26761 * 7 6 5 41 41 H 1.08998 * 109.50819 * 181.39335 * 7 6 5 42 42 H 1.09000 * 109.83772 * 351.60163 * 13 12 10 43 43 H 1.09002 * 109.83067 * 112.55016 * 13 12 10 44 44 H 1.08996 * 109.70160 * 182.37796 * 14 13 12 45 45 H 1.09005 * 109.67656 * 61.89838 * 14 13 12 46 46 H 1.08997 * 109.21438 * 303.31169 * 15 14 13 47 47 H 1.08996 * 109.21404 * 183.99075 * 15 14 13 48 48 H 1.09002 * 110.81183 * 321.66345 * 20 18 12 49 49 H 1.08999 * 110.81403 * 85.18576 * 20 18 12 50 50 H 1.08999 * 109.88405 * 262.25880 * 21 20 18 51 51 H 1.09000 * 110.01908 * 141.15410 * 21 20 18 52 52 H 0.96993 * 120.00018 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 1.8783 1.9939 1.3306 5 6 2.3435 3.4512 1.2711 6 8 3.6914 3.4971 0.7952 7 6 3.8653 2.9131 -0.4987 8 6 3.4155 1.4503 -0.4571 9 1 4.0506 0.8936 0.2321 10 6 3.5220 0.8516 -1.8359 11 8 2.5526 0.8310 -2.5646 12 7 4.6944 0.3393 -2.2595 13 6 5.8343 0.2787 -1.3364 14 6 7.0325 0.9328 -2.0281 15 6 7.3000 0.1934 -3.3375 16 6 6.1171 0.3415 -4.2968 17 1 6.0240 1.3657 -4.6578 18 6 4.8156 -0.1397 -3.6240 19 1 3.9532 0.1802 -4.2089 20 6 4.9715 -1.6751 -3.6758 21 6 5.6704 -1.8933 -5.0371 22 7 6.3256 -0.6269 -5.3992 23 6 7.0118 -0.3837 -6.5590 24 1 7.3834 0.6084 -6.7687 25 6 7.2299 -1.4125 -7.4651 26 7 6.6892 -2.5949 -7.2610 27 14 8.2909 -1.1185 -8.9742 28 1 9.6838 -1.5488 -8.6915 29 1 7.7536 -1.9002 -10.1169 30 1 8.2787 0.3269 -9.3140 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5138 0.8901 35 1 1.8934 -0.5139 -0.8899 36 1 0.8333 1.9577 1.6382 37 1 2.4882 1.4454 2.0485 38 1 1.6991 4.0117 0.5937 39 1 2.2935 3.8903 2.2675 40 1 3.2652 3.4578 -1.2276 41 1 4.9167 2.9627 -0.7821 42 1 5.5973 0.8192 -0.4200 43 1 6.0670 -0.7605 -1.1041 44 1 7.9095 0.8668 -1.3843 45 1 6.8094 1.9791 -2.2372 46 1 7.4602 -0.8638 -3.1262 47 1 8.1946 0.6044 -3.8053 48 1 5.5988 -2.0286 -2.8574 49 1 3.9976 -2.1642 -3.6578 50 1 4.9326 -2.1587 -5.7943 51 1 6.4149 -2.6848 -4.9517 52 1 6.8412 -3.3136 -7.8943 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049563178.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:36 Heat of formation + Delta-G solvation = -29.410830 kcal Electronic energy + Delta-G solvation = -31990.515010 eV Core-core repulsion = 27991.307543 eV Total energy + Delta-G solvation = -3999.207467 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.98310 -39.47715 -37.85076 -36.17964 -35.32717 -32.58155 -32.41846 -31.59080 -31.11413 -29.02177 -28.30159 -26.87946 -25.47757 -24.30423 -24.16149 -22.29390 -22.06911 -21.38362 -20.11208 -19.68619 -18.15647 -17.50301 -16.90234 -16.83275 -16.66908 -15.68346 -15.30569 -15.20727 -14.77687 -14.64354 -14.36581 -14.32934 -14.25736 -14.03943 -13.55344 -13.25949 -13.24322 -12.88995 -12.48318 -12.38807 -12.17772 -12.07592 -11.97102 -11.84986 -11.64954 -11.40955 -11.10238 -11.01157 -10.98023 -10.81476 -10.77562 -10.65340 -10.51987 -10.15875 -10.08336 -10.02179 -9.66275 -9.62474 -9.41274 -8.63269 -8.59197 -8.30197 -6.87267 -5.73184 -3.06794 2.61542 2.93620 3.39576 3.44014 3.45094 3.46995 3.65705 4.39087 4.47696 4.52296 4.65631 4.67976 4.82100 4.89386 4.94918 5.08349 5.11668 5.21233 5.25435 5.25687 5.34439 5.36365 5.41725 5.46137 5.47318 5.55468 5.61138 5.64522 5.68112 5.69776 5.83584 5.86090 5.97040 6.08419 6.12986 6.18783 6.28435 6.33073 6.48496 6.54229 6.62099 6.72009 6.72825 6.78741 6.96395 7.04632 7.52077 7.57846 7.60088 7.80939 8.21609 8.31532 9.19006 9.78849 10.44933 11.38399 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021271 B = 0.003069 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.049945 B = 9120.493610 C = 9787.544151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.048 3.952 3 N -0.515 5.515 4 C 0.019 3.981 5 C 0.060 3.940 6 O -0.379 6.379 7 C 0.077 3.923 8 C 0.031 3.969 9 H 0.071 0.929 10 C 0.515 3.485 11 O -0.517 6.517 12 N -0.592 5.592 13 C 0.101 3.899 14 C -0.133 4.133 15 C -0.129 4.129 16 C 0.157 3.843 17 H 0.059 0.941 18 C 0.131 3.869 19 H 0.101 0.899 20 C -0.151 4.151 21 C 0.181 3.819 22 N -0.597 5.597 23 C -0.228 4.228 24 H 0.078 0.922 25 C -0.006 4.006 26 N -0.920 5.920 27 Si 0.911 3.089 28 H -0.289 1.289 29 H -0.291 1.291 30 H -0.281 1.281 31 H 0.049 0.951 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.032 0.968 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.043 0.957 38 H 0.062 0.938 39 H 0.100 0.900 40 H 0.069 0.931 41 H 0.105 0.895 42 H 0.080 0.920 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.064 0.936 46 H 0.063 0.937 47 H 0.061 0.939 48 H 0.058 0.942 49 H 0.060 0.940 50 H 0.047 0.953 51 H 0.045 0.955 52 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.905 7.816 20.500 23.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.079 4.079 3 N -0.241 5.241 4 C -0.109 4.109 5 C -0.017 4.017 6 O -0.297 6.297 7 C -0.001 4.001 8 C -0.081 4.081 9 H 0.089 0.911 10 C 0.301 3.699 11 O -0.392 6.392 12 N -0.324 5.324 13 C -0.021 4.021 14 C -0.172 4.172 15 C -0.170 4.170 16 C 0.048 3.952 17 H 0.077 0.923 18 C 0.027 3.973 19 H 0.119 0.881 20 C -0.190 4.190 21 C 0.056 3.944 22 N -0.322 5.322 23 C -0.356 4.356 24 H 0.096 0.904 25 C -0.202 4.202 26 N -0.567 5.567 27 Si 0.741 3.259 28 H -0.217 1.217 29 H -0.218 1.218 30 H -0.206 1.206 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.050 0.950 35 H 0.101 0.899 36 H 0.109 0.891 37 H 0.061 0.939 38 H 0.081 0.919 39 H 0.118 0.882 40 H 0.087 0.913 41 H 0.123 0.877 42 H 0.099 0.901 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.082 0.918 46 H 0.082 0.918 47 H 0.080 0.920 48 H 0.077 0.923 49 H 0.079 0.921 50 H 0.065 0.935 51 H 0.063 0.937 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.507 8.003 19.632 22.491 hybrid contribution 0.976 -0.713 -0.332 1.253 sum -6.532 7.290 19.300 21.640 Atomic orbital electron populations 1.21681 0.94332 1.01422 1.02334 1.22179 0.96902 0.87698 1.01108 1.61971 1.17415 1.19682 1.25045 1.22870 1.02406 0.96109 0.89562 1.22720 0.83571 0.95071 1.00303 1.88012 1.27802 1.80037 1.33841 1.22555 1.02235 0.89573 0.85720 1.22380 0.91265 0.99063 0.95436 0.91145 1.20111 0.83070 0.78527 0.88193 1.90717 1.36134 1.56212 1.56103 1.47678 1.10943 1.60859 1.12963 1.21861 0.86654 1.01508 0.92126 1.21864 0.96986 1.00071 0.98276 1.22116 1.00433 1.00369 0.94050 1.21333 0.90975 0.94174 0.88715 0.92300 1.21797 1.00235 0.94750 0.80483 0.88119 1.23094 1.00441 0.94724 1.00726 1.21167 0.95058 0.88635 0.89562 1.44696 1.62544 1.08629 1.16311 1.19040 1.27040 0.95101 0.94406 0.90419 1.24805 1.00579 0.95773 0.99069 1.69961 1.47148 1.02273 1.37285 0.86118 0.80132 0.77314 0.82321 1.21671 1.21779 1.20623 0.93160 0.92362 0.91414 0.94978 0.89946 0.89068 0.93887 0.91926 0.88231 0.91293 0.87694 0.90136 0.91171 0.91189 0.91759 0.91846 0.92015 0.92315 0.92118 0.93463 0.93703 0.93739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 10.02 37.16 0.37 -1.03 16 2 C 0.05 0.55 5.32 -3.82 -0.02 0.53 16 3 N -0.51 -5.96 4.20 -227.73 -0.96 -6.92 16 4 C 0.02 0.16 5.47 -3.71 -0.02 0.14 16 5 C 0.06 0.51 7.01 37.21 0.26 0.77 16 6 O -0.38 -4.05 10.83 -35.23 -0.38 -4.43 16 7 C 0.08 0.85 6.15 37.20 0.23 1.07 16 8 C 0.03 0.36 1.53 -68.76 -0.11 0.26 16 9 H 0.07 0.76 6.24 -51.93 -0.32 0.43 16 10 C 0.52 7.74 5.61 -10.99 -0.06 7.68 16 11 O -0.52 -9.70 14.79 5.55 0.08 -9.62 16 12 N -0.59 -8.72 2.74 -165.28 -0.45 -9.18 16 13 C 0.10 1.18 5.91 -3.86 -0.02 1.16 16 14 C -0.13 -1.64 6.09 -26.85 -0.16 -1.80 16 15 C -0.13 -2.18 5.10 -26.86 -0.14 -2.32 16 16 C 0.16 3.10 3.60 -66.35 -0.24 2.87 16 17 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 18 C 0.13 2.41 3.08 -67.29 -0.21 2.20 16 19 H 0.10 2.11 7.00 -51.93 -0.36 1.75 16 20 C -0.15 -2.86 6.08 -25.16 -0.15 -3.01 16 21 C 0.18 4.33 5.19 -2.88 -0.01 4.31 16 22 N -0.60 -14.73 2.91 -162.19 -0.47 -15.20 16 23 C -0.23 -6.20 10.28 -15.06 -0.15 -6.35 16 24 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 25 C -0.01 -0.16 5.48 -17.43 -0.10 -0.26 16 26 N -0.92 -26.73 10.36 55.49 0.57 -26.15 16 27 Si 0.91 21.96 29.56 -169.99 -5.02 16.93 16 28 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 29 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 30 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 31 H 0.05 0.42 6.90 -51.93 -0.36 0.06 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.03 0.32 7.99 -51.93 -0.41 -0.09 16 35 H 0.08 1.16 5.87 -51.93 -0.30 0.85 16 36 H 0.09 0.67 6.82 -51.93 -0.35 0.31 16 37 H 0.04 0.36 8.13 -51.93 -0.42 -0.06 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.11 1.03 7.79 -51.93 -0.40 0.63 16 42 H 0.08 0.75 5.00 -51.93 -0.26 0.49 16 43 H 0.07 0.81 7.54 -51.93 -0.39 0.42 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 46 H 0.06 1.15 7.12 -51.93 -0.37 0.78 16 47 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 48 H 0.06 1.03 6.82 -51.93 -0.35 0.67 16 49 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 50 H 0.05 1.27 7.46 -51.93 -0.39 0.88 16 51 H 0.04 1.18 7.45 -51.93 -0.39 0.79 16 52 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 384.36 15.07 5.79 5.79 Total: -1.00 -31.43 384.36 -10.24 -41.67 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -8.87 Total: 0.88 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: -0.53 Total: 6.22 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: -1.31 Total: -57.45 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: -0.30 Total: -14.05 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.43 -10.24 -41.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049563178.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.259 kcal (2) G-P(sol) polarization free energy of solvation -31.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds