Wall clock time and date at job start Tue Mar 31 2020 19:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 N 1.46899 * 109.47640 * 2 1 4 4 C 1.47013 * 110.99759 * 289.92019 * 3 2 1 5 5 C 1.53101 * 109.25550 * 177.60516 * 4 3 2 6 6 O 1.43012 * 109.25985 * 56.84502 * 5 4 3 7 7 C 1.43011 * 113.74053 * 301.33021 * 6 5 4 8 8 C 1.47011 * 111.00460 * 166.27947 * 3 2 1 9 9 H 1.09001 * 109.54015 * 62.43579 * 8 3 2 10 10 C 1.50696 * 109.50845 * 302.33253 * 8 3 2 11 11 O 1.21287 * 119.99945 * 329.30633 * 10 8 3 12 12 N 1.34775 * 120.00154 * 149.31180 * 10 8 3 13 13 C 1.47666 * 134.45666 * 184.51147 * 12 10 8 14 14 C 1.53520 * 85.97897 * 204.31889 * 13 12 10 15 15 C 1.47670 * 134.45959 * 4.50749 * 12 10 8 16 16 C 1.52665 * 113.56734 * 91.00409 * 14 13 12 17 17 C 1.53326 * 109.16965 * 188.83789 * 16 14 13 18 18 N 1.46887 * 108.76398 * 307.59757 * 17 16 14 19 19 C 1.36941 * 120.49675 * 235.63344 * 18 17 16 20 20 H 1.07996 * 120.00063 * 30.91445 * 19 18 17 21 21 C 1.38814 * 119.99761 * 210.91390 * 19 18 17 22 22 N 1.31615 * 120.00196 * 12.90013 * 21 19 18 23 23 Si 1.86801 * 119.99748 * 192.90482 * 21 19 18 24 24 H 1.48497 * 109.47365 * 90.00007 * 23 21 19 25 25 H 1.48499 * 109.46819 * 210.00061 * 23 21 19 26 26 H 1.48501 * 109.46758 * 329.99752 * 23 21 19 27 27 C 1.46890 * 119.01035 * 55.60696 * 18 17 16 28 28 C 1.52675 * 113.55880 * 222.23365 * 14 13 12 29 29 H 1.08998 * 109.47555 * 299.99937 * 1 2 3 30 30 H 1.09005 * 109.47268 * 59.99668 * 1 2 3 31 31 H 1.09002 * 109.47466 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47651 * 239.99653 * 2 1 3 33 33 H 1.09005 * 109.47268 * 120.00332 * 2 1 3 34 34 H 1.09001 * 109.51040 * 57.66698 * 4 3 2 35 35 H 1.08999 * 109.54414 * 297.55728 * 4 3 2 36 36 H 1.09001 * 109.50710 * 296.91017 * 5 4 3 37 37 H 1.09003 * 109.54158 * 176.80862 * 5 4 3 38 38 H 1.09004 * 109.50440 * 298.73458 * 7 6 5 39 39 H 1.09002 * 109.54071 * 178.62938 * 7 6 5 40 40 H 1.08999 * 113.79166 * 90.05635 * 13 12 10 41 41 H 1.09003 * 113.89939 * 318.59479 * 13 12 10 42 42 H 1.08997 * 113.78627 * 41.41060 * 15 12 10 43 43 H 1.09000 * 113.78884 * 269.94636 * 15 12 10 44 44 H 1.08999 * 109.52615 * 68.93020 * 16 14 13 45 45 H 1.09000 * 109.51688 * 308.74245 * 16 14 13 46 46 H 1.09005 * 109.58921 * 67.37857 * 17 16 14 47 47 H 1.09002 * 109.59074 * 187.81425 * 17 16 14 48 48 H 0.96998 * 120.00150 * 179.97438 * 22 21 19 49 49 H 1.08992 * 109.58978 * 184.60905 * 27 18 17 50 50 H 1.09003 * 109.58358 * 64.17567 * 27 18 17 51 51 H 1.08998 * 109.51971 * 291.07576 * 28 14 13 52 52 H 1.09000 * 109.51883 * 51.25633 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7544 2.0375 -1.2904 5 6 2.2256 3.4928 -1.2265 6 8 3.6123 3.5249 -0.8784 7 6 3.9064 2.8985 0.3732 8 6 3.4523 1.4372 0.3255 9 1 4.0194 0.9046 -0.4380 10 6 3.6873 0.7932 1.6675 11 8 2.8261 0.8372 2.5204 12 7 4.8545 0.1684 1.9200 13 6 5.3820 -0.6194 3.0521 14 6 6.7732 -0.2104 2.5480 15 6 6.1182 -0.0029 1.1755 16 6 7.2959 1.0785 3.1774 17 6 8.5754 1.5105 2.4514 18 7 9.5102 0.3778 2.4270 19 6 10.7760 0.5103 2.9325 20 1 10.9614 1.1868 3.7536 21 6 11.8207 -0.2250 2.3895 22 7 11.6593 -0.8497 1.2424 23 14 13.4557 -0.3281 3.2872 24 1 13.4426 -1.4934 4.2074 25 1 14.5531 -0.4893 2.2998 26 1 13.6711 0.9168 4.0677 27 6 9.0669 -0.8995 1.8528 28 6 7.7908 -1.3483 2.5744 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 0.6850 2.0099 -1.4993 35 1 2.2932 1.5150 -2.0808 36 1 1.6487 4.0294 -0.4732 37 1 2.0832 3.9652 -2.1985 38 1 3.3784 3.4178 1.1730 39 1 4.9797 2.9404 0.5585 40 1 5.1830 -1.6883 2.9746 41 1 5.1308 -0.2095 4.0304 42 1 6.4511 0.8987 0.6613 43 1 6.1378 -0.8886 0.5405 44 1 7.5155 0.9065 4.2311 45 1 6.5426 1.8608 3.0844 46 1 8.3340 1.8071 1.4306 47 1 9.0303 2.3484 2.9797 48 1 12.3894 -1.3632 0.8628 49 1 9.8457 -1.6502 1.9865 50 1 8.8596 -0.7701 0.7905 51 1 8.0268 -1.6019 3.6079 52 1 7.3748 -2.2206 2.0703 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050573183.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:01 Heat of formation + Delta-G solvation = -9.185964 kcal Electronic energy + Delta-G solvation = -31317.452631 eV Core-core repulsion = 27319.122179 eV Total energy + Delta-G solvation = -3998.330451 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.98599 -39.88592 -38.03226 -36.26980 -35.79111 -32.63374 -31.98475 -31.12585 -30.56475 -29.75720 -27.50606 -26.66432 -26.19421 -24.88975 -23.92965 -22.41054 -22.31736 -21.25554 -20.56952 -19.15228 -18.08999 -17.31815 -16.88211 -16.75805 -16.36109 -15.72408 -15.48187 -15.19409 -15.07394 -14.90816 -14.48288 -14.15400 -14.00903 -13.91196 -13.63562 -13.35205 -13.31113 -12.91126 -12.66160 -12.52127 -12.27506 -12.18139 -11.97251 -11.88649 -11.68624 -11.61858 -11.44312 -11.12070 -11.04613 -10.82239 -10.78639 -10.53792 -10.33931 -10.22585 -10.08808 -9.88269 -9.73629 -9.66361 -9.32232 -8.66998 -8.59159 -8.49862 -6.66249 -5.82221 -3.29253 2.50091 2.74368 3.35234 3.42538 3.43183 3.43355 3.62868 4.30659 4.45874 4.51533 4.59412 4.65575 4.76434 4.78821 4.90435 5.02423 5.07420 5.13949 5.17323 5.24669 5.27875 5.37056 5.42174 5.44994 5.46225 5.52082 5.58345 5.61174 5.62520 5.65999 5.74024 5.75210 5.84309 5.99488 6.00668 6.06295 6.22622 6.43638 6.53109 6.57520 6.57935 6.62480 6.66308 6.78251 6.82734 6.90925 7.29798 7.62627 7.74623 7.76439 8.17397 8.44394 9.18993 9.80651 10.37660 11.25550 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021217 B = 0.002720 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.356680 B =10292.692248 C =10832.783904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.048 3.952 3 N -0.515 5.515 4 C 0.017 3.983 5 C 0.060 3.940 6 O -0.377 6.377 7 C 0.078 3.922 8 C 0.038 3.962 9 H 0.068 0.932 10 C 0.540 3.460 11 O -0.526 6.526 12 N -0.640 5.640 13 C 0.111 3.889 14 C -0.072 4.072 15 C 0.107 3.893 16 C -0.109 4.109 17 C 0.147 3.853 18 N -0.590 5.590 19 C -0.253 4.253 20 H 0.064 0.936 21 C 0.004 3.996 22 N -0.904 5.904 23 Si 0.903 3.097 24 H -0.287 1.287 25 H -0.291 1.291 26 H -0.279 1.279 27 C 0.172 3.828 28 C -0.128 4.128 29 H 0.066 0.934 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.033 0.967 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.044 0.956 36 H 0.062 0.938 37 H 0.100 0.900 38 H 0.068 0.932 39 H 0.106 0.894 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.065 0.935 45 H 0.051 0.949 46 H 0.018 0.982 47 H 0.056 0.944 48 H 0.254 0.746 49 H 0.091 0.909 50 H 0.018 0.982 51 H 0.062 0.938 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.255 2.274 -4.758 19.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.080 4.080 3 N -0.241 5.241 4 C -0.111 4.111 5 C -0.017 4.017 6 O -0.295 6.295 7 C 0.001 3.999 8 C -0.074 4.074 9 H 0.085 0.915 10 C 0.328 3.672 11 O -0.402 6.402 12 N -0.376 5.376 13 C -0.011 4.011 14 C -0.073 4.073 15 C -0.015 4.015 16 C -0.148 4.148 17 C 0.021 3.979 18 N -0.313 5.313 19 C -0.382 4.382 20 H 0.082 0.918 21 C -0.194 4.194 22 N -0.548 5.548 23 Si 0.733 3.267 24 H -0.214 1.214 25 H -0.217 1.217 26 H -0.204 1.204 27 C 0.046 3.954 28 C -0.168 4.168 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.051 0.949 33 H 0.098 0.902 34 H 0.110 0.890 35 H 0.063 0.937 36 H 0.080 0.920 37 H 0.118 0.882 38 H 0.086 0.914 39 H 0.124 0.876 40 H 0.100 0.900 41 H 0.097 0.903 42 H 0.101 0.899 43 H 0.103 0.897 44 H 0.083 0.917 45 H 0.070 0.930 46 H 0.036 0.964 47 H 0.074 0.926 48 H 0.064 0.936 49 H 0.109 0.891 50 H 0.036 0.964 51 H 0.081 0.919 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -19.893 2.671 -4.194 20.505 hybrid contribution 1.039 -0.879 -0.205 1.376 sum -18.853 1.792 -4.399 19.443 Atomic orbital electron populations 1.21714 0.94295 1.01547 1.02417 1.22165 0.96775 0.88005 1.01018 1.62016 1.13479 1.18024 1.30595 1.22883 1.02324 0.95954 0.89893 1.22722 0.82528 0.94958 1.01474 1.88039 1.25088 1.78084 1.38256 1.22531 1.01652 0.88890 0.86859 1.22232 0.90597 0.99032 0.95582 0.91465 1.19764 0.80171 0.78699 0.88542 1.90701 1.42838 1.59677 1.47004 1.50177 1.13465 1.51995 1.21949 1.23395 0.91079 0.95518 0.91123 1.21961 0.93020 0.98205 0.94067 1.23411 0.79725 1.01872 0.96484 1.21778 0.98551 0.94178 1.00280 1.20897 0.89307 0.91275 0.96467 1.43989 1.10467 1.05908 1.70920 1.19190 0.83961 1.24432 1.10649 0.91821 1.25123 0.97614 1.01193 0.95502 1.69972 1.32009 1.35982 1.16874 0.86277 0.83539 0.78024 0.78828 1.21435 1.21737 1.20427 1.20788 0.92279 0.89295 0.93036 1.22160 0.97695 0.94799 1.02152 0.91513 0.92883 0.92270 0.94916 0.90250 0.88953 0.93743 0.91971 0.88150 0.91379 0.87646 0.90031 0.90321 0.89876 0.89698 0.91659 0.92990 0.96443 0.92592 0.93604 0.89109 0.96408 0.91923 0.92928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.93 37.15 0.37 -0.92 16 2 C 0.05 0.53 5.38 -3.83 -0.02 0.51 16 3 N -0.51 -6.03 4.25 -227.73 -0.97 -7.00 16 4 C 0.02 0.16 5.46 -3.71 -0.02 0.14 16 5 C 0.06 0.55 7.01 37.21 0.26 0.81 16 6 O -0.38 -4.51 10.83 -35.23 -0.38 -4.89 16 7 C 0.08 0.95 6.27 37.21 0.23 1.18 16 8 C 0.04 0.47 2.20 -68.76 -0.15 0.32 16 9 H 0.07 0.83 7.88 -51.93 -0.41 0.42 16 10 C 0.54 7.93 5.89 -10.99 -0.06 7.87 16 11 O -0.53 -9.40 16.48 5.55 0.09 -9.31 16 12 N -0.64 -8.85 3.44 -180.19 -0.62 -9.47 16 13 C 0.11 1.50 7.97 -3.14 -0.03 1.48 16 14 C -0.07 -1.06 0.77 -154.42 -0.12 -1.18 16 15 C 0.11 1.44 7.23 -3.16 -0.02 1.42 16 16 C -0.11 -1.75 5.21 -26.73 -0.14 -1.89 16 17 C 0.15 2.86 6.38 -3.66 -0.02 2.83 16 18 N -0.59 -13.79 2.95 -172.22 -0.51 -14.30 16 19 C -0.25 -6.62 9.56 -15.06 -0.14 -6.77 16 20 H 0.06 1.66 7.86 -52.49 -0.41 1.25 16 21 C 0.00 0.12 5.00 -17.43 -0.09 0.03 16 22 N -0.90 -25.15 11.10 55.49 0.62 -24.53 16 23 Si 0.90 21.08 29.57 -169.99 -5.03 16.06 16 24 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 C 0.17 3.73 5.20 -3.66 -0.02 3.71 16 28 C -0.13 -2.14 5.25 -26.73 -0.14 -2.28 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.41 6.65 -51.93 -0.35 0.06 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.03 0.33 8.08 -51.93 -0.42 -0.09 16 33 H 0.08 1.05 6.06 -51.93 -0.31 0.74 16 34 H 0.09 0.69 6.54 -51.93 -0.34 0.35 16 35 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.08 1.00 8.09 -51.93 -0.42 0.58 16 41 H 0.08 1.09 8.09 -51.93 -0.42 0.67 16 42 H 0.08 1.12 7.44 -51.93 -0.39 0.74 16 43 H 0.08 1.06 8.07 -51.93 -0.42 0.64 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.05 0.78 8.01 -51.93 -0.42 0.36 16 46 H 0.02 0.34 7.52 -51.93 -0.39 -0.05 16 47 H 0.06 1.09 7.92 -51.93 -0.41 0.68 16 48 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 49 H 0.09 2.27 6.01 -51.93 -0.31 1.96 16 50 H 0.02 0.40 8.09 -51.93 -0.42 -0.02 16 51 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 52 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 LS Contribution 396.68 15.07 5.98 5.98 Total: -1.00 -30.42 396.68 -10.13 -40.55 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -9.20 Total: -0.34 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: -0.11 Total: 7.25 kcal Atomic # 7 Polarization: -53.82 SS G_CDS: -1.48 Total: -55.30 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: -0.29 Total: -14.20 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.06 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.42 -10.13 -40.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050573183.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.365 kcal (2) G-P(sol) polarization free energy of solvation -30.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds