Wall clock time and date at job start Tue Mar 31 2020 20:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52992 * 109.47293 * 2 1 4 4 C 1.53000 * 109.47163 * 239.99791 * 2 1 3 5 5 N 1.46500 * 109.47052 * 120.00166 * 2 1 3 6 6 C 1.46761 * 124.35056 * 180.02562 * 5 2 1 7 7 C 1.54479 * 105.47653 * 197.03442 * 6 5 2 8 8 H 1.08996 * 111.00496 * 216.44892 * 7 6 5 9 9 C 1.50706 * 110.97235 * 92.69810 * 7 6 5 10 10 O 1.21283 * 119.99503 * 6.16965 * 9 7 6 11 11 N 1.34773 * 120.00081 * 185.89692 * 9 7 6 12 12 C 1.46506 * 119.99968 * 180.02562 * 11 9 7 13 13 C 1.52992 * 109.47161 * 179.97438 * 12 11 9 14 14 H 1.08996 * 112.85403 * 43.79755 * 13 12 11 15 15 C 1.53784 * 113.61630 * 174.99938 * 13 12 11 16 16 C 1.53781 * 87.08109 * 139.97554 * 15 13 12 17 17 H 1.09005 * 113.60906 * 89.20481 * 16 15 13 18 18 N 1.46499 * 113.61319 * 220.01721 * 16 15 13 19 19 C 1.36935 * 120.00023 * 205.00476 * 18 16 15 20 20 H 1.08004 * 120.00020 * 359.97438 * 19 18 16 21 21 C 1.38809 * 120.00310 * 180.02562 * 19 18 16 22 22 N 1.31625 * 120.00118 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00370 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46768 * 60.00303 * 23 21 19 25 25 H 1.48499 * 109.47124 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.46898 * 300.00171 * 23 21 19 27 27 C 1.53777 * 87.08449 * 334.56870 * 16 15 13 28 28 C 1.54632 * 101.76326 * 334.58220 * 7 6 5 29 29 C 1.34423 * 124.35040 * 0.02562 * 5 2 1 30 30 O 1.21284 * 124.94291 * 359.54303 * 29 5 2 31 31 H 1.09003 * 109.47071 * 299.99954 * 1 2 3 32 32 H 1.08999 * 109.47485 * 59.99608 * 1 2 3 33 33 H 1.09001 * 109.47503 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.47156 * 179.97438 * 3 2 1 35 35 H 1.09003 * 109.47140 * 299.99638 * 3 2 1 36 36 H 1.08995 * 109.47632 * 60.00237 * 3 2 1 37 37 H 1.09001 * 109.47012 * 300.00425 * 4 2 1 38 38 H 1.08998 * 109.46905 * 59.99726 * 4 2 1 39 39 H 1.08991 * 109.47265 * 180.02562 * 4 2 1 40 40 H 1.09000 * 110.25211 * 78.03262 * 6 5 2 41 41 H 1.09009 * 110.24517 * 316.03201 * 6 5 2 42 42 H 0.96998 * 120.00525 * 359.97438 * 11 9 7 43 43 H 1.09004 * 109.46587 * 299.99661 * 12 11 9 44 44 H 1.08998 * 109.47213 * 59.99069 * 12 11 9 45 45 H 1.09000 * 113.61427 * 254.53017 * 15 13 12 46 46 H 1.08996 * 113.61042 * 25.34197 * 15 13 12 47 47 H 0.96998 * 119.99849 * 25.00328 * 18 16 15 48 48 H 0.96988 * 120.00531 * 180.02562 * 22 21 19 49 49 H 1.09001 * 113.61384 * 270.88697 * 27 16 15 50 50 H 1.08996 * 113.61197 * 139.97870 * 27 16 15 51 51 H 1.09000 * 110.48551 * 143.47455 * 28 7 6 52 52 H 1.09001 * 110.48179 * 266.11950 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 2.0183 -0.6906 1.1962 6 6 3.4366 -0.8786 1.5228 7 6 3.4697 -1.9973 2.5876 8 1 4.2483 -1.8100 3.3270 9 6 3.6536 -3.3482 1.9453 10 8 3.8645 -3.4293 0.7537 11 7 3.5891 -4.4656 2.6959 12 6 3.7684 -5.7788 2.0715 13 6 3.6499 -6.8705 3.1368 14 1 2.8187 -6.7047 3.8222 15 6 3.7019 -8.2972 2.5653 16 6 4.5647 -8.6691 3.7828 17 1 3.9843 -8.9968 4.6454 18 7 5.6706 -9.5753 3.4636 19 6 6.1941 -10.3856 4.4354 20 1 5.7919 -10.3564 5.4373 21 6 7.2423 -11.2439 4.1331 22 7 7.7328 -11.2792 2.9122 23 14 7.9569 -12.3488 5.4590 24 1 6.8956 -13.2480 5.9790 25 1 9.0575 -13.1635 4.8843 26 1 8.4852 -11.5138 6.5674 27 6 4.9785 -7.1892 3.8427 28 6 2.0642 -1.8721 3.2201 29 6 1.2247 -1.2336 2.1356 30 8 0.0122 -1.2141 2.1166 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 1.6765 -1.7489 -1.2492 38 1 1.6766 -0.2075 -2.1392 39 1 3.1299 -0.7217 -1.2490 40 1 3.8553 0.0418 1.9297 41 1 3.9905 -1.1859 0.6356 42 1 3.4247 -4.4006 3.6496 43 1 3.0013 -5.9275 1.3115 44 1 4.7537 -5.8293 1.6080 45 1 2.7330 -8.7962 2.5479 46 1 4.2315 -8.3679 1.6153 47 1 6.0320 -9.6013 2.5638 48 1 8.4650 -11.8792 2.7008 49 1 5.8583 -6.9573 3.2425 50 1 5.0401 -6.7938 4.8565 51 1 1.6722 -2.8563 3.4765 52 1 2.0985 -1.2324 4.1020 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086101730.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:28 Heat of formation + Delta-G solvation = -42.846113 kcal Electronic energy + Delta-G solvation = -29577.285708 eV Core-core repulsion = 25577.495643 eV Total energy + Delta-G solvation = -3999.790065 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.42916 -39.65466 -38.49609 -37.01095 -35.86716 -34.80138 -33.33278 -31.10740 -30.18815 -28.28776 -27.71713 -27.63277 -27.17307 -25.12542 -24.17720 -23.24339 -21.85976 -21.10182 -20.35697 -19.10011 -18.93935 -17.82767 -17.05498 -16.94175 -16.19636 -16.05687 -15.52013 -15.35148 -14.82631 -14.72871 -14.41086 -14.27994 -14.12142 -13.98665 -13.64277 -13.60100 -13.46324 -13.04127 -12.85228 -12.56128 -12.41032 -12.31614 -12.09621 -11.94224 -11.92965 -11.86791 -11.82829 -11.46203 -11.42444 -11.31089 -11.25978 -10.84446 -10.56543 -10.30048 -10.19142 -9.91844 -9.85864 -9.70321 -9.51576 -9.12044 -8.97908 -8.88787 -6.98789 -5.80194 -3.09290 2.29326 2.39560 2.60736 2.95988 3.41564 3.46071 3.47228 3.86493 3.92266 4.30463 4.43759 4.53920 4.55331 4.56317 4.70134 4.84697 4.92744 4.97915 5.02766 5.13098 5.18795 5.22170 5.27041 5.28697 5.34738 5.42768 5.44220 5.45943 5.47088 5.52116 5.60622 5.74724 5.78102 5.80265 5.89695 6.00194 6.02879 6.06599 6.19383 6.27872 6.32228 6.36270 6.39256 6.55661 6.79252 6.85650 7.08028 7.32927 7.66386 7.90640 8.02740 8.38306 9.49225 10.07395 10.41515 11.42048 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.029226 B = 0.001817 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.821984 B =15402.197363 C =15583.279098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.174 3.826 3 C -0.156 4.156 4 C -0.156 4.156 5 N -0.604 5.604 6 C 0.114 3.886 7 C -0.127 4.127 8 H 0.127 0.873 9 C 0.517 3.483 10 O -0.533 6.533 11 N -0.721 5.721 12 C 0.132 3.868 13 C -0.128 4.128 14 H 0.088 0.912 15 C -0.143 4.143 16 C 0.166 3.834 17 H 0.075 0.925 18 N -0.713 5.713 19 C -0.245 4.245 20 H 0.071 0.929 21 C -0.013 4.013 22 N -0.932 5.932 23 Si 0.908 3.092 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C -0.160 4.160 28 C -0.148 4.148 29 C 0.518 3.482 30 O -0.528 6.528 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.079 0.921 41 H 0.099 0.901 42 H 0.401 0.599 43 H 0.064 0.936 44 H 0.071 0.929 45 H 0.061 0.939 46 H 0.080 0.920 47 H 0.385 0.615 48 H 0.256 0.744 49 H 0.078 0.922 50 H 0.054 0.946 51 H 0.106 0.894 52 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.682 27.019 -2.635 29.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.091 3.909 3 C -0.214 4.214 4 C -0.214 4.214 5 N -0.339 5.339 6 C -0.009 4.009 7 C -0.148 4.148 8 H 0.145 0.855 9 C 0.302 3.698 10 O -0.410 6.410 11 N -0.372 5.372 12 C 0.009 3.991 13 C -0.147 4.147 14 H 0.106 0.894 15 C -0.182 4.182 16 C 0.054 3.946 17 H 0.093 0.907 18 N -0.350 5.350 19 C -0.376 4.376 20 H 0.089 0.911 21 C -0.209 4.209 22 N -0.580 5.580 23 Si 0.739 3.261 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.212 1.212 27 C -0.201 4.201 28 C -0.189 4.189 29 C 0.305 3.695 30 O -0.405 6.405 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.097 0.903 41 H 0.117 0.883 42 H 0.235 0.765 43 H 0.082 0.918 44 H 0.089 0.911 45 H 0.080 0.920 46 H 0.099 0.901 47 H 0.219 0.781 48 H 0.066 0.934 49 H 0.096 0.904 50 H 0.072 0.928 51 H 0.124 0.876 52 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -12.114 26.838 -3.453 29.647 hybrid contribution 0.708 -0.615 0.924 1.316 sum -11.406 26.223 -2.529 28.708 Atomic orbital electron populations 1.22093 0.92152 1.03609 1.01904 1.20479 0.95242 0.91418 0.83794 1.22181 1.01545 0.95096 1.02588 1.22157 1.01850 1.01126 0.96268 1.48356 1.06982 1.56124 1.22390 1.21966 0.82843 0.96779 0.99333 1.22336 0.99493 0.93697 0.99304 0.85538 1.20171 0.76809 0.85660 0.87170 1.90718 1.48234 1.87027 1.14977 1.46010 1.72801 1.06319 1.12037 1.21466 1.01924 0.80121 0.95564 1.22644 0.99883 0.94410 0.97746 0.89357 1.23452 1.00722 0.93557 1.00514 1.21516 0.89594 0.88510 0.95013 0.90666 1.42404 1.36790 1.44452 1.11392 1.19255 1.12327 1.14471 0.91592 0.91148 1.24777 0.99268 1.00285 0.96600 1.69647 1.28792 1.41347 1.18223 0.86258 0.78532 0.80464 0.80862 1.21235 1.21679 1.21248 1.23947 0.95383 1.01528 0.99270 1.22420 0.93432 1.04220 0.98794 1.20724 0.87477 0.78068 0.83197 1.90740 1.12641 1.59602 1.77473 0.91355 0.92400 0.91296 0.92142 0.91220 0.92231 0.91917 0.91479 0.91927 0.90296 0.88251 0.76487 0.91773 0.91083 0.92001 0.90125 0.78068 0.93382 0.90354 0.92764 0.87583 0.86664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 7.00 37.15 0.26 -1.06 16 2 C 0.17 1.46 1.20 -131.83 -0.16 1.30 16 3 C -0.16 -0.96 8.54 37.15 0.32 -0.65 16 4 C -0.16 -1.31 8.49 37.16 0.32 -0.99 16 5 N -0.60 -5.40 2.76 -157.58 -0.43 -5.84 16 6 C 0.11 0.81 5.97 -3.12 -0.02 0.79 16 7 C -0.13 -0.84 3.55 -90.13 -0.32 -1.16 16 8 H 0.13 0.47 8.14 -51.93 -0.42 0.05 16 9 C 0.52 5.45 7.16 -10.98 -0.08 5.37 16 10 O -0.53 -7.72 15.51 5.56 0.09 -7.63 16 11 N -0.72 -7.03 5.29 -60.29 -0.32 -7.34 16 12 C 0.13 1.62 5.51 -4.04 -0.02 1.59 16 13 C -0.13 -1.60 3.75 -89.81 -0.34 -1.94 16 14 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 15 C -0.14 -2.21 7.39 -25.92 -0.19 -2.40 16 16 C 0.17 3.12 4.48 -67.12 -0.30 2.82 16 17 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 18 N -0.71 -17.50 5.40 -52.64 -0.28 -17.78 16 19 C -0.25 -6.70 9.97 -15.06 -0.15 -6.85 16 20 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 21 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 22 N -0.93 -27.94 13.06 55.49 0.72 -27.22 16 23 Si 0.91 22.11 29.55 -169.99 -5.02 17.08 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 27 C -0.16 -2.51 7.43 -25.92 -0.19 -2.70 16 28 C -0.15 -1.00 6.39 -26.74 -0.17 -1.17 16 29 C 0.52 5.40 7.84 -10.86 -0.09 5.31 16 30 O -0.53 -7.25 13.99 5.55 0.08 -7.18 16 31 H 0.07 0.72 7.06 -51.93 -0.37 0.35 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.81 7.08 -51.93 -0.37 0.44 16 34 H 0.06 0.33 7.90 -51.93 -0.41 -0.08 16 35 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.52 7.21 -51.93 -0.37 0.15 16 40 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.10 0.86 5.93 -51.92 -0.31 0.55 16 42 H 0.40 2.86 8.31 -40.82 -0.34 2.52 16 43 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.07 1.00 7.84 -51.93 -0.41 0.59 16 45 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 46 H 0.08 1.32 8.08 -51.93 -0.42 0.90 16 47 H 0.39 10.11 7.93 -40.82 -0.32 9.78 16 48 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 49 H 0.08 1.36 7.89 -51.93 -0.41 0.95 16 50 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 51 H 0.11 0.72 7.53 -51.93 -0.39 0.33 16 52 H 0.12 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 411.74 15.07 6.20 6.20 Total: -1.00 -34.12 411.74 -9.35 -43.47 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -9.16 Total: 8.43 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -1.23 Total: -2.21 kcal Atomic # 7 Polarization: -57.87 SS G_CDS: -0.31 Total: -58.18 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: 0.16 Total: -14.81 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -34.12 -9.35 -43.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086101730.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.627 kcal (2) G-P(sol) polarization free energy of solvation -34.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds