Wall clock time and date at job start Tue Mar 31 2020 20:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46769 * 2 1 4 4 C 1.52992 * 109.47768 * 239.99908 * 2 1 3 5 5 N 1.46503 * 109.47018 * 119.99600 * 2 1 3 6 6 C 1.46761 * 124.35153 * 60.00376 * 5 2 1 7 7 C 1.54471 * 105.47803 * 163.00118 * 6 5 2 8 8 H 1.09000 * 110.97646 * 267.26733 * 7 6 5 9 9 C 1.50700 * 110.97054 * 143.53470 * 7 6 5 10 10 O 1.21279 * 120.00113 * 0.02562 * 9 7 6 11 11 N 1.34784 * 119.99961 * 180.02562 * 9 7 6 12 12 C 1.46494 * 119.99635 * 180.02562 * 11 9 7 13 13 C 1.53002 * 109.47001 * 180.02562 * 12 11 9 14 14 H 1.09004 * 112.84530 * 316.19618 * 13 12 11 15 15 C 1.53781 * 113.61925 * 87.50187 * 13 12 11 16 16 C 1.53772 * 87.08067 * 139.98389 * 15 13 12 17 17 H 1.09003 * 113.61215 * 220.02040 * 16 15 13 18 18 N 1.46502 * 113.61785 * 89.11908 * 16 15 13 19 19 C 1.36932 * 120.00081 * 107.49913 * 18 16 15 20 20 H 1.08006 * 120.00360 * 0.02562 * 19 18 16 21 21 C 1.38815 * 120.00258 * 180.02562 * 19 18 16 22 22 N 1.31620 * 119.99531 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00378 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47350 * 59.99609 * 23 21 19 25 25 H 1.48498 * 109.47035 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.46860 * 299.99502 * 23 21 19 27 27 C 1.53774 * 87.08490 * 334.56751 * 16 15 13 28 28 C 1.54632 * 101.76434 * 25.41714 * 7 6 5 29 29 C 1.34419 * 124.34882 * 240.02535 * 5 2 1 30 30 O 1.21280 * 124.94409 * 0.39261 * 29 5 2 31 31 H 1.08999 * 109.47431 * 300.00087 * 1 2 3 32 32 H 1.09001 * 109.47211 * 60.00401 * 1 2 3 33 33 H 1.09005 * 109.46813 * 179.97438 * 1 2 3 34 34 H 1.09006 * 109.47000 * 179.97438 * 3 2 1 35 35 H 1.08991 * 109.47021 * 299.99676 * 3 2 1 36 36 H 1.08999 * 109.47215 * 59.99781 * 3 2 1 37 37 H 1.09005 * 109.47061 * 299.99980 * 4 2 1 38 38 H 1.09001 * 109.47007 * 59.99566 * 4 2 1 39 39 H 1.08993 * 109.47779 * 179.97438 * 4 2 1 40 40 H 1.09010 * 110.24186 * 44.00473 * 6 5 2 41 41 H 1.08997 * 110.32078 * 282.04990 * 6 5 2 42 42 H 0.96995 * 120.00015 * 359.72695 * 11 9 7 43 43 H 1.09005 * 109.47306 * 299.99972 * 12 11 9 44 44 H 1.09002 * 109.47518 * 60.00210 * 12 11 9 45 45 H 1.08999 * 113.61279 * 254.53348 * 15 13 12 46 46 H 1.08996 * 113.61002 * 25.42644 * 15 13 12 47 47 H 0.97001 * 119.99712 * 287.49685 * 18 16 15 48 48 H 0.96996 * 119.99958 * 180.02562 * 22 21 19 49 49 H 1.09008 * 113.61816 * 270.88794 * 27 16 15 50 50 H 1.09000 * 113.69322 * 139.99150 * 27 16 15 51 51 H 1.09005 * 110.48539 * 93.87487 * 28 7 6 52 52 H 1.08993 * 110.48891 * 216.52496 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2491 5 7 2.0183 -0.6905 1.1963 6 6 1.7232 -2.0906 1.5227 7 6 2.7661 -2.4941 2.5884 8 1 3.6433 -2.9452 2.1247 9 6 2.1618 -3.4226 3.6100 10 8 0.9980 -3.7509 3.5177 11 7 2.9148 -3.8883 4.6263 12 6 2.3275 -4.7914 5.6190 13 6 3.3872 -5.1673 6.6566 14 1 4.3517 -5.4070 6.2087 15 6 3.4796 -4.1772 7.8296 16 6 3.6606 -5.3997 8.7446 17 1 3.1262 -5.3195 9.6912 18 7 5.0581 -5.8062 8.9114 19 6 5.7004 -5.5782 10.0991 20 1 5.1766 -5.0990 10.9131 21 6 7.0248 -5.9629 10.2571 22 7 7.6630 -6.5473 9.2653 23 14 7.9007 -5.6525 11.8775 24 1 7.1881 -6.3630 12.9694 25 1 9.2960 -6.1532 11.7897 26 1 7.9143 -4.1950 12.1615 27 6 2.9061 -6.2111 7.6783 28 6 3.1153 -1.1270 3.2212 29 6 2.7939 -0.1230 2.1361 30 8 3.1797 1.0266 2.1170 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 3.1300 1.4426 0.0005 35 1 1.6766 1.9563 -0.8899 36 1 1.6765 1.9564 0.8900 37 1 1.6768 -1.7489 -1.2491 38 1 1.6768 -0.2074 -2.1391 39 1 3.1300 -0.7208 -1.2493 40 1 1.8295 -2.7152 0.6356 41 1 0.7154 -2.1805 1.9280 42 1 3.8467 -3.6289 4.6979 43 1 1.4943 -4.2935 6.1152 44 1 1.9685 -5.6930 5.1227 45 1 4.3558 -3.5303 7.7868 46 1 2.5556 -3.6284 8.0115 47 1 5.5285 -6.2370 8.1806 48 1 8.5883 -6.8165 9.3758 49 1 1.8252 -6.2185 7.8189 50 1 3.3182 -7.2065 7.5125 51 1 2.4999 -0.9463 4.1025 52 1 4.1736 -1.0849 3.4785 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086381402.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:34 Heat of formation + Delta-G solvation = -42.899495 kcal Electronic energy + Delta-G solvation = -29368.898535 eV Core-core repulsion = 25369.106155 eV Total energy + Delta-G solvation = -3999.792380 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.35478 -39.75548 -38.57683 -37.04246 -35.87916 -34.79273 -33.26127 -31.13707 -30.11117 -28.30183 -27.75265 -27.72782 -27.16068 -25.11207 -24.05529 -23.24172 -21.81701 -21.68610 -20.35880 -18.97425 -18.46489 -17.78432 -17.29745 -16.90347 -16.12123 -16.10273 -15.60835 -15.20828 -14.97481 -14.53263 -14.43685 -14.20168 -14.16507 -14.01532 -13.82531 -13.62631 -13.42616 -13.04513 -12.92930 -12.65101 -12.48967 -12.43047 -12.29115 -12.04579 -11.97211 -11.86603 -11.76747 -11.44885 -11.42524 -11.37418 -11.08163 -10.85939 -10.54548 -10.30755 -10.22207 -9.92087 -9.72935 -9.66456 -9.52107 -9.12408 -8.99332 -8.91788 -7.04274 -5.84345 -3.13493 2.28424 2.38136 2.52031 3.02185 3.40302 3.45052 3.45723 3.88868 3.97269 4.39434 4.39857 4.49901 4.52705 4.55773 4.64109 4.80734 4.98287 5.01907 5.03816 5.14038 5.16956 5.18965 5.24881 5.30473 5.34150 5.41332 5.42052 5.45568 5.53643 5.55729 5.55920 5.64386 5.66308 5.80356 5.89091 5.89469 5.99270 6.04476 6.16007 6.29856 6.32390 6.32829 6.53541 6.69606 6.81789 6.84180 6.99225 7.34320 7.65253 7.89455 8.01141 8.34851 9.45570 10.02632 10.36779 11.37951 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019825 B = 0.001922 C = 0.001821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.052375 B =14566.704529 C =15369.965505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.173 3.827 3 C -0.141 4.141 4 C -0.158 4.158 5 N -0.610 5.610 6 C 0.117 3.883 7 C -0.125 4.125 8 H 0.118 0.882 9 C 0.523 3.477 10 O -0.540 6.540 11 N -0.718 5.718 12 C 0.130 3.870 13 C -0.120 4.120 14 H 0.093 0.907 15 C -0.168 4.168 16 C 0.167 3.833 17 H 0.062 0.938 18 N -0.705 5.705 19 C -0.244 4.244 20 H 0.072 0.928 21 C -0.012 4.012 22 N -0.933 5.933 23 Si 0.909 3.091 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.285 1.285 27 C -0.148 4.148 28 C -0.146 4.146 29 C 0.522 3.478 30 O -0.525 6.525 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.069 0.931 39 H 0.060 0.940 40 H 0.083 0.917 41 H 0.092 0.908 42 H 0.404 0.596 43 H 0.067 0.933 44 H 0.065 0.935 45 H 0.067 0.933 46 H 0.067 0.933 47 H 0.385 0.615 48 H 0.256 0.744 49 H 0.077 0.923 50 H 0.068 0.932 51 H 0.109 0.891 52 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.550 9.970 -21.140 27.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.090 3.910 3 C -0.198 4.198 4 C -0.216 4.216 5 N -0.345 5.345 6 C -0.006 4.006 7 C -0.147 4.147 8 H 0.136 0.864 9 C 0.308 3.692 10 O -0.418 6.418 11 N -0.368 5.368 12 C 0.007 3.993 13 C -0.139 4.139 14 H 0.112 0.888 15 C -0.210 4.210 16 C 0.055 3.945 17 H 0.080 0.920 18 N -0.344 5.344 19 C -0.375 4.375 20 H 0.090 0.910 21 C -0.208 4.208 22 N -0.581 5.581 23 Si 0.740 3.260 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.212 1.212 27 C -0.188 4.188 28 C -0.186 4.186 29 C 0.309 3.691 30 O -0.402 6.402 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.101 0.899 41 H 0.110 0.890 42 H 0.239 0.761 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.086 0.914 47 H 0.219 0.781 48 H 0.066 0.934 49 H 0.095 0.905 50 H 0.087 0.913 51 H 0.127 0.873 52 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -14.122 10.392 -21.077 27.416 hybrid contribution 1.179 -0.055 0.591 1.320 sum -12.943 10.336 -20.485 26.344 Atomic orbital electron populations 1.22197 0.94115 1.02627 1.02689 1.20485 0.93974 0.93011 0.83547 1.22104 1.02521 0.93111 1.02092 1.22192 1.01836 1.00809 0.96781 1.48457 1.50891 1.12573 1.22584 1.21912 0.99489 0.81503 0.97698 1.22241 1.00661 0.95561 0.96211 0.86431 1.20025 0.86415 0.80842 0.81911 1.90710 1.16698 1.59101 1.75271 1.46050 1.14976 1.48947 1.26859 1.21529 0.96340 0.92645 0.88776 1.22718 0.98213 0.99262 0.93661 0.88850 1.23892 1.00878 0.98608 0.97581 1.21049 0.86965 0.91867 0.94641 0.91973 1.42153 1.06686 1.70452 1.15086 1.19243 0.93976 1.32861 0.91384 0.91040 1.24765 0.96983 1.01205 0.97890 1.69645 1.11256 1.46008 1.31161 0.86239 0.78754 0.77836 0.83183 1.21197 1.21679 1.21192 1.23447 0.99965 0.98253 0.97097 1.22380 1.05435 0.92022 0.98811 1.20703 0.77571 0.87846 0.82941 1.90745 1.54674 1.17535 1.77231 0.92066 0.91244 0.92010 0.91247 0.92376 0.91216 0.92086 0.91181 0.92051 0.89860 0.88978 0.76101 0.91439 0.91682 0.91462 0.91410 0.78121 0.93374 0.90476 0.91318 0.87260 0.86953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.04 8.54 37.16 0.32 -0.72 16 2 C 0.17 1.32 1.20 -131.82 -0.16 1.16 16 3 C -0.14 -1.23 7.00 37.16 0.26 -0.97 16 4 C -0.16 -0.94 8.49 37.15 0.32 -0.63 16 5 N -0.61 -5.28 2.76 -157.58 -0.43 -5.72 16 6 C 0.12 0.91 5.96 -3.13 -0.02 0.89 16 7 C -0.12 -0.94 3.54 -90.14 -0.32 -1.26 16 8 H 0.12 0.65 8.14 -51.93 -0.42 0.23 16 9 C 0.52 5.42 7.06 -10.98 -0.08 5.34 16 10 O -0.54 -7.46 15.50 5.56 0.09 -7.37 16 11 N -0.72 -7.21 5.56 -60.29 -0.33 -7.55 16 12 C 0.13 1.53 5.51 -4.04 -0.02 1.51 16 13 C -0.12 -1.63 3.63 -89.81 -0.33 -1.96 16 14 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 15 C -0.17 -2.62 7.43 -25.92 -0.19 -2.81 16 16 C 0.17 3.11 4.56 -67.13 -0.31 2.81 16 17 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 18 N -0.71 -16.82 5.31 -52.64 -0.28 -17.10 16 19 C -0.24 -6.55 9.97 -15.06 -0.15 -6.70 16 20 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 21 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 22 N -0.93 -27.31 13.06 55.49 0.72 -26.59 16 23 Si 0.91 21.88 29.55 -169.99 -5.02 16.86 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 27 C -0.15 -2.23 7.39 -25.92 -0.19 -2.42 16 28 C -0.15 -1.19 6.41 -26.74 -0.17 -1.36 16 29 C 0.52 5.49 7.84 -10.86 -0.09 5.40 16 30 O -0.53 -7.20 13.99 5.56 0.08 -7.12 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.39 7.90 -51.93 -0.41 -0.02 16 34 H 0.07 0.72 7.08 -51.93 -0.37 0.35 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.74 7.06 -51.93 -0.37 0.37 16 37 H 0.06 0.33 7.21 -51.93 -0.37 -0.05 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.08 0.53 7.13 -51.92 -0.37 0.16 16 41 H 0.09 0.84 6.96 -51.93 -0.36 0.48 16 42 H 0.40 3.44 8.47 -40.82 -0.35 3.09 16 43 H 0.07 0.84 7.84 -51.93 -0.41 0.43 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 46 H 0.07 0.95 7.89 -51.93 -0.41 0.54 16 47 H 0.38 9.69 7.90 -40.82 -0.32 9.37 16 48 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 49 H 0.08 1.01 8.10 -51.92 -0.42 0.58 16 50 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 51 H 0.11 0.93 7.89 -51.93 -0.41 0.52 16 52 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 412.32 15.07 6.21 6.21 Total: -1.00 -32.38 412.32 -9.38 -41.76 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -9.18 Total: 8.76 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: -1.22 Total: -2.14 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: -0.32 Total: -56.95 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: 0.16 Total: -14.49 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -32.38 -9.38 -41.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086381402.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.141 kcal (2) G-P(sol) polarization free energy of solvation -32.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds