Wall clock time and date at job start Tue Mar 31 2020 20:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46507 * 109.46951 * 2 1 4 4 C 1.36936 * 119.99949 * 271.48076 * 3 2 1 5 5 H 1.07996 * 119.99995 * 38.03324 * 4 3 2 6 6 C 1.38813 * 119.99955 * 218.02803 * 4 3 2 7 7 N 1.31629 * 119.99872 * 21.57644 * 6 4 3 8 8 Si 1.86796 * 120.00167 * 201.57996 * 6 4 3 9 9 H 1.48502 * 109.47164 * 89.99977 * 8 6 4 10 10 H 1.48502 * 109.47260 * 209.99822 * 8 6 4 11 11 H 1.48493 * 109.47045 * 330.00009 * 8 6 4 12 12 C 1.46503 * 119.99848 * 91.47807 * 3 2 1 13 13 C 1.53003 * 109.47215 * 270.00026 * 12 3 2 14 14 C 1.53349 * 109.41814 * 295.12834 * 13 12 3 15 15 C 1.53188 * 109.14673 * 178.67725 * 14 13 12 16 16 N 1.46924 * 108.89834 * 54.57494 * 15 14 13 17 17 C 1.34777 * 120.62904 * 126.33892 * 16 15 14 18 18 O 1.21350 * 120.00274 * 352.14869 * 17 16 15 19 19 C 1.49450 * 119.99789 * 172.15106 * 17 16 15 20 20 O 1.21348 * 119.99891 * 353.61373 * 19 17 16 21 21 N 1.34774 * 120.00039 * 173.61516 * 19 17 16 22 22 C 1.46502 * 120.00255 * 179.97438 * 21 19 17 23 23 C 1.52995 * 109.47499 * 179.97438 * 22 21 19 24 24 C 1.52994 * 117.50370 * 243.75315 * 23 22 21 25 25 C 1.52994 * 117.50005 * 175.09201 * 23 22 21 26 26 C 1.46921 * 118.73750 * 306.32380 * 16 15 14 27 27 C 1.53042 * 109.45684 * 175.00004 * 13 12 3 28 28 H 1.08996 * 109.47432 * 299.99824 * 1 2 3 29 29 H 1.09007 * 109.47013 * 60.00069 * 1 2 3 30 30 H 1.08995 * 109.46732 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47432 * 240.00176 * 2 1 3 32 32 H 1.08998 * 109.46966 * 119.99780 * 2 1 3 33 33 H 0.96996 * 119.99554 * 180.02562 * 7 6 4 34 34 H 1.08995 * 109.46957 * 150.00106 * 12 3 2 35 35 H 1.09000 * 109.47137 * 30.00012 * 12 3 2 36 36 H 1.08996 * 109.45630 * 55.03065 * 13 12 3 37 37 H 1.08995 * 109.68547 * 58.70939 * 14 13 12 38 38 H 1.09004 * 109.47382 * 298.51182 * 14 13 12 39 39 H 1.09001 * 109.58697 * 294.71633 * 15 14 13 40 40 H 1.09002 * 109.58487 * 174.44207 * 15 14 13 41 41 H 0.96998 * 120.00122 * 0.02562 * 21 19 17 42 42 H 1.09002 * 109.47250 * 300.00610 * 22 21 19 43 43 H 1.09006 * 109.46598 * 60.00239 * 22 21 19 44 44 H 1.09006 * 115.54946 * 29.41950 * 23 22 21 45 45 H 1.09001 * 117.49656 * 0.02562 * 24 23 22 46 46 H 1.08995 * 117.50454 * 145.01484 * 24 23 22 47 47 H 1.09010 * 117.49892 * 214.98072 * 25 23 22 48 48 H 1.09004 * 117.50092 * 359.97438 * 25 23 22 49 49 H 1.09009 * 109.58792 * 173.38986 * 26 16 15 50 50 H 1.08997 * 109.58733 * 293.67126 * 26 16 15 51 51 H 1.08994 * 109.49779 * 61.43564 * 27 13 12 52 52 H 1.08996 * 109.52622 * 301.35370 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2177 2.0370 -1.1855 5 1 1.5315 1.8893 -2.0063 6 6 3.3016 2.8917 -1.3322 7 7 4.3487 2.7679 -0.5443 8 14 3.2741 4.2177 -2.6476 9 1 2.6871 5.4606 -2.0854 10 1 4.6602 4.4886 -3.1065 11 1 2.4532 3.7583 -3.7965 12 6 2.2933 2.0610 1.2684 13 6 1.0295 2.7782 1.7471 14 6 0.6688 3.8916 0.7562 15 6 -0.6154 4.5837 1.2238 16 7 -0.4324 5.0415 2.6078 17 6 -0.6587 6.3276 2.9413 18 8 -0.8777 7.1494 2.0757 19 6 -0.6399 6.7416 4.3772 20 8 -0.5367 5.9037 5.2489 21 7 -0.7376 8.0455 4.7039 22 6 -0.7198 8.4513 6.1115 23 6 -0.8438 9.9734 6.2051 24 6 0.3359 10.7430 6.8023 25 6 -0.9605 10.5881 7.6012 26 6 0.0017 4.0705 3.6215 27 6 1.2797 3.3831 3.1305 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3632 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 5.1059 3.3654 -0.6466 34 1 3.0919 2.7888 1.1248 35 1 2.5998 1.3278 2.0145 36 1 0.2074 2.0649 1.8059 37 1 0.5121 3.4648 -0.2344 38 1 1.4798 4.6187 0.7155 39 1 -1.4469 3.8804 1.1785 40 1 -0.8246 5.4386 0.5807 41 1 -0.8205 8.7152 4.0071 42 1 -1.5549 7.9855 6.6346 43 1 0.2176 8.1348 6.5690 44 1 -1.3986 10.4504 5.3971 45 1 1.2007 10.1650 7.1281 46 1 0.5571 11.7264 6.3875 47 1 -1.5918 11.4699 7.7118 48 1 -0.9493 9.9082 8.4531 49 1 0.2022 4.5871 4.5602 50 1 -0.7805 3.3268 3.7736 51 1 2.0851 4.1148 3.0674 52 1 1.5592 2.5937 3.8282 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725026021.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:50 Heat of formation + Delta-G solvation = -17.004710 kcal Electronic energy + Delta-G solvation = -30458.801868 eV Core-core repulsion = 26460.132371 eV Total energy + Delta-G solvation = -3998.669498 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.91000 -39.00154 -37.84455 -37.61263 -35.82277 -34.48478 -32.55473 -31.83588 -30.69274 -28.97763 -28.16518 -26.73320 -24.71109 -23.53579 -22.85405 -22.78923 -21.78728 -21.45480 -20.40137 -20.01336 -19.07092 -17.57786 -17.11581 -16.61024 -16.43325 -16.00537 -15.51264 -14.88697 -14.82293 -14.51222 -14.33439 -14.16654 -13.86032 -13.82649 -13.54329 -13.42135 -13.07388 -12.84545 -12.59122 -12.41110 -12.14874 -11.97866 -11.90545 -11.65622 -11.37035 -11.22274 -11.08331 -10.93374 -10.80902 -10.72111 -10.66421 -10.49173 -10.36876 -10.27247 -10.04577 -9.84700 -9.63292 -9.46668 -9.34782 -8.97009 -8.47532 -8.40350 -6.50042 -5.74748 -3.32960 1.40345 2.28699 3.19219 3.26370 3.37881 3.45540 3.47235 3.54863 4.15818 4.28203 4.43598 4.50049 4.52733 4.76271 5.15759 5.21175 5.24061 5.28868 5.30737 5.42170 5.44860 5.45988 5.61650 5.64170 5.65836 5.66262 5.78569 5.88079 5.98539 6.04799 6.06358 6.28856 6.33445 6.37437 6.41882 6.45092 6.50626 6.62512 6.70040 6.89146 6.91196 6.95453 7.03864 7.07079 7.20161 7.30629 7.41182 7.69217 7.76507 7.85491 8.01063 8.56416 9.24440 9.86918 10.46632 11.23955 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015335 B = 0.002735 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.469909 B =10236.940239 C =11070.886365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.141 3.859 3 N -0.584 5.584 4 C -0.254 4.254 5 H 0.058 0.942 6 C 0.017 3.983 7 N -0.885 5.885 8 Si 0.885 3.115 9 H -0.284 1.284 10 H -0.292 1.292 11 H -0.277 1.277 12 C 0.154 3.846 13 C -0.105 4.105 14 C -0.112 4.112 15 C 0.103 3.897 16 N -0.568 5.568 17 C 0.502 3.498 18 O -0.533 6.533 19 C 0.511 3.489 20 O -0.511 6.511 21 N -0.700 5.700 22 C 0.148 3.852 23 C -0.174 4.174 24 C -0.176 4.176 25 C -0.169 4.169 26 C 0.070 3.930 27 C -0.128 4.128 28 H 0.044 0.956 29 H 0.047 0.953 30 H 0.033 0.967 31 H 0.043 0.957 32 H 0.030 0.970 33 H 0.253 0.747 34 H 0.091 0.909 35 H 0.021 0.979 36 H 0.057 0.943 37 H 0.100 0.900 38 H 0.057 0.943 39 H 0.067 0.933 40 H 0.086 0.914 41 H 0.414 0.586 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.113 0.887 45 H 0.098 0.902 46 H 0.097 0.903 47 H 0.098 0.902 48 H 0.098 0.902 49 H 0.133 0.867 50 H 0.064 0.936 51 H 0.061 0.939 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.507 10.714 14.854 21.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.014 3.986 3 N -0.304 5.304 4 C -0.384 4.384 5 H 0.076 0.924 6 C -0.184 4.184 7 N -0.528 5.528 8 Si 0.715 3.285 9 H -0.210 1.210 10 H -0.218 1.218 11 H -0.202 1.202 12 C 0.027 3.973 13 C -0.126 4.126 14 C -0.150 4.150 15 C -0.018 4.018 16 N -0.300 5.300 17 C 0.284 3.716 18 O -0.410 6.410 19 C 0.293 3.707 20 O -0.388 6.388 21 N -0.353 5.353 22 C 0.025 3.975 23 C -0.192 4.192 24 C -0.213 4.213 25 C -0.206 4.206 26 C -0.052 4.052 27 C -0.167 4.167 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.048 0.952 33 H 0.063 0.937 34 H 0.109 0.891 35 H 0.039 0.961 36 H 0.075 0.925 37 H 0.118 0.882 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.104 0.896 41 H 0.250 0.750 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.131 0.869 45 H 0.117 0.883 46 H 0.115 0.885 47 H 0.117 0.883 48 H 0.117 0.883 49 H 0.150 0.850 50 H 0.083 0.917 51 H 0.080 0.920 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.358 10.591 15.002 21.084 hybrid contribution -0.037 1.035 -1.025 1.457 sum -10.395 11.627 13.977 20.942 Atomic orbital electron populations 1.22397 1.00262 0.98797 1.01110 1.20828 0.91561 0.87578 0.98584 1.43754 1.76431 1.08075 1.02178 1.18903 1.05148 1.22157 0.92164 0.92444 1.25133 0.94288 1.01321 0.97661 1.70017 1.04550 1.37510 1.40673 0.86565 0.76926 0.82991 0.82033 1.21022 1.21839 1.20242 1.20925 0.94695 0.95942 0.85735 1.21917 1.01499 0.96750 0.92395 1.21920 0.94672 0.97242 1.01172 1.22016 0.99690 0.99525 0.80542 1.48091 1.62730 1.07796 1.11375 1.19890 0.79570 0.83488 0.88671 1.90737 1.49497 1.50558 1.50250 1.20363 0.77289 0.83070 0.90013 1.90495 1.48067 1.49521 1.50757 1.45782 1.72607 1.07561 1.09352 1.21011 1.02838 0.92118 0.81497 1.22455 1.04241 0.93931 0.98589 1.23127 0.92398 1.02033 1.03717 1.22975 1.00757 1.02975 0.93934 1.22896 0.96794 0.92351 0.93110 1.21963 0.96644 0.99833 0.98269 0.93671 0.93343 0.94797 0.93848 0.95192 0.93676 0.89104 0.96063 0.92500 0.88204 0.92380 0.91470 0.89565 0.74984 0.90463 0.90644 0.86905 0.88324 0.88452 0.88338 0.88309 0.85023 0.91740 0.92018 0.91221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.94 10.23 37.16 0.38 -2.56 16 2 C 0.14 2.92 6.43 -4.04 -0.03 2.89 16 3 N -0.58 -13.77 2.30 -173.23 -0.40 -14.17 16 4 C -0.25 -6.58 7.36 -15.06 -0.11 -6.69 16 5 H 0.06 1.51 7.92 -52.49 -0.42 1.10 16 6 C 0.02 0.44 4.94 -17.43 -0.09 0.36 16 7 N -0.89 -24.96 11.52 55.49 0.64 -24.32 16 8 Si 0.89 21.29 29.61 -169.99 -5.03 16.26 16 9 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 10 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 C 0.15 3.42 4.84 -4.04 -0.02 3.40 16 13 C -0.10 -1.94 2.36 -90.42 -0.21 -2.15 16 14 C -0.11 -2.17 4.97 -26.45 -0.13 -2.30 16 15 C 0.10 1.73 6.43 -3.71 -0.02 1.70 16 16 N -0.57 -9.06 2.97 -173.28 -0.52 -9.58 16 17 C 0.50 7.90 7.74 -11.58 -0.09 7.81 16 18 O -0.53 -9.32 15.92 5.50 0.09 -9.23 16 19 C 0.51 6.88 7.75 -11.59 -0.09 6.79 16 20 O -0.51 -7.47 13.15 5.50 0.07 -7.39 16 21 N -0.70 -7.26 5.55 -60.73 -0.34 -7.59 16 22 C 0.15 1.22 5.96 -4.04 -0.02 1.20 16 23 C -0.17 -1.10 5.84 -90.63 -0.53 -1.63 16 24 C -0.18 -1.03 10.18 -26.70 -0.27 -1.30 16 25 C -0.17 -0.90 10.25 -26.70 -0.27 -1.17 16 26 C 0.07 1.03 6.01 -3.71 -0.02 1.01 16 27 C -0.13 -2.08 5.36 -26.61 -0.14 -2.22 16 28 H 0.04 0.78 6.22 -51.93 -0.32 0.46 16 29 H 0.05 0.89 8.14 -51.92 -0.42 0.47 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.04 0.93 8.05 -51.93 -0.42 0.51 16 32 H 0.03 0.59 7.88 -51.93 -0.41 0.18 16 33 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 34 H 0.09 2.34 5.56 -51.93 -0.29 2.05 16 35 H 0.02 0.46 7.88 -51.93 -0.41 0.05 16 36 H 0.06 1.04 6.21 -51.93 -0.32 0.72 16 37 H 0.10 2.13 6.27 -51.93 -0.33 1.81 16 38 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.09 1.49 7.00 -51.93 -0.36 1.12 16 41 H 0.41 3.92 7.89 -40.82 -0.32 3.60 16 42 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.08 0.65 7.87 -51.93 -0.41 0.24 16 44 H 0.11 0.66 8.04 -51.93 -0.42 0.25 16 45 H 0.10 0.59 8.03 -51.93 -0.42 0.17 16 46 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.10 0.44 8.14 -51.92 -0.42 0.02 16 48 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.13 1.96 4.25 -55.11 -0.23 1.72 16 50 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 51 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 52 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 405.95 15.07 6.12 6.12 Total: -1.00 -29.50 405.95 -9.90 -39.40 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -8.86 Total: 5.37 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: -1.67 Total: 5.14 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: -0.61 Total: -55.66 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: 0.16 Total: -16.63 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -29.50 -9.90 -39.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725026021.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.398 kcal (2) G-P(sol) polarization free energy of solvation -29.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds