Wall clock time and date at job start Tue Mar 31 2020 20:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21283 * 120.00140 * 2 1 4 4 N 1.34781 * 120.00057 * 180.27464 * 2 1 3 5 5 C 1.46923 * 120.63148 * 355.13683 * 4 2 1 6 6 C 1.53196 * 108.77729 * 233.58850 * 5 4 2 7 7 C 1.53041 * 109.30948 * 305.36531 * 6 5 4 8 8 C 1.53037 * 109.53931 * 61.36741 * 7 6 5 9 9 H 1.08995 * 109.49981 * 58.58166 * 8 7 6 10 10 C 1.50696 * 109.49854 * 178.68303 * 8 7 6 11 11 O 1.21285 * 120.00097 * 15.09253 * 10 8 7 12 12 N 1.34775 * 120.00510 * 195.09110 * 10 8 7 13 13 C 1.46494 * 120.00536 * 174.61685 * 12 10 8 14 14 C 1.46504 * 119.99530 * 354.61565 * 12 10 8 15 15 H 1.08997 * 109.47215 * 3.35035 * 14 12 10 16 16 C 1.53003 * 109.46876 * 123.35208 * 14 12 10 17 17 N 1.46500 * 109.47117 * 304.99716 * 16 14 12 18 18 C 1.36933 * 120.00378 * 180.02562 * 17 16 14 19 19 H 1.08002 * 119.99842 * 0.02562 * 18 17 16 20 20 C 1.38813 * 120.00292 * 180.02562 * 18 17 16 21 21 N 1.31618 * 119.99567 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 119.99838 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.46979 * 90.00433 * 22 20 18 24 24 H 1.48500 * 109.46822 * 209.99752 * 22 20 18 25 25 H 1.48493 * 109.47331 * 329.99979 * 22 20 18 26 26 C 1.52996 * 109.47006 * 243.34862 * 14 12 10 27 27 C 1.52999 * 117.49986 * 248.74655 * 26 14 12 28 28 C 1.53004 * 117.49844 * 180.08915 * 26 14 12 29 29 C 1.46931 * 120.62997 * 174.86100 * 4 2 1 30 30 H 1.09003 * 109.47045 * 182.77988 * 1 2 3 31 31 H 1.08996 * 109.47398 * 302.78148 * 1 2 3 32 32 H 1.08995 * 109.47144 * 62.78776 * 1 2 3 33 33 H 1.09003 * 109.58329 * 353.37224 * 5 4 2 34 34 H 1.08994 * 109.58877 * 113.65566 * 5 4 2 35 35 H 1.09000 * 109.49852 * 65.31419 * 6 5 4 36 36 H 1.08995 * 109.49829 * 185.41003 * 6 5 4 37 37 H 1.09001 * 109.45692 * 181.38332 * 7 6 5 38 38 H 1.09002 * 109.45630 * 301.34284 * 7 6 5 39 39 H 1.09006 * 109.47448 * 94.91799 * 13 12 10 40 40 H 1.09000 * 109.47425 * 214.92073 * 13 12 10 41 41 H 1.09000 * 109.47253 * 334.92227 * 13 12 10 42 42 H 1.08996 * 109.47388 * 64.99879 * 16 14 12 43 43 H 1.09005 * 109.47024 * 185.00236 * 16 14 12 44 44 H 0.96999 * 119.99846 * 0.02562 * 17 16 14 45 45 H 0.97012 * 119.99330 * 179.97438 * 21 20 18 46 46 H 1.08999 * 115.55260 * 34.41887 * 26 14 12 47 47 H 1.08999 * 117.49980 * 0.02562 * 27 26 14 48 48 H 1.09000 * 117.49944 * 145.02131 * 27 26 14 49 49 H 1.09003 * 117.49992 * 214.98184 * 28 26 14 50 50 H 1.09001 * 117.49703 * 359.97438 * 28 26 14 51 51 H 1.08998 * 109.58472 * 246.20211 * 29 4 2 52 52 H 1.09000 * 109.58606 * 6.62058 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0056 5 6 1.4643 -2.4459 0.0955 6 6 2.0584 -3.2539 1.2534 7 6 3.5688 -3.3942 1.0501 8 6 4.2158 -2.0073 1.0470 9 1 4.0013 -1.5037 1.9895 10 6 5.7067 -2.1482 0.8792 11 8 6.1778 -3.2004 0.5022 12 7 6.5168 -1.1051 1.1479 13 6 7.9710 -1.2753 1.0991 14 6 5.9429 0.1990 1.4888 15 1 4.8569 0.1177 1.5331 16 6 6.4765 0.6509 2.8497 17 7 6.2059 -0.3856 3.8490 18 6 6.5951 -0.2017 5.1490 19 1 7.1011 0.7077 5.4376 20 6 6.3391 -1.1840 6.0957 21 7 6.7128 -1.0069 7.3453 22 14 5.4631 -2.7566 5.5966 23 1 6.4650 -3.7700 5.1789 24 1 4.6842 -3.2765 6.7491 25 1 4.5440 -2.4735 4.4652 26 6 6.3346 1.2232 0.4218 27 6 7.3083 2.3307 0.8293 28 6 5.8305 2.6568 0.5998 29 6 3.6457 -1.1854 -0.1189 30 1 -0.3633 -1.0265 0.0498 31 1 -0.3634 0.5564 0.8639 32 1 -0.3633 0.4699 -0.9139 33 1 0.4074 -2.2584 0.2852 34 1 1.5754 -3.0016 -0.8356 35 1 1.8643 -2.7385 2.1940 36 1 1.6013 -4.2431 1.2790 37 1 3.9904 -3.9897 1.8599 38 1 3.7626 -3.8876 0.0977 39 1 8.3392 -0.9752 0.1180 40 1 8.4353 -0.6560 1.8665 41 1 8.2205 -2.3214 1.2763 42 1 7.5514 0.8179 2.7813 43 1 5.9829 1.5772 3.1442 44 1 5.7510 -1.2022 3.5899 45 1 6.5335 -1.6933 8.0070 46 1 6.4075 0.8380 -0.5952 47 1 7.6703 2.3295 1.8574 48 1 8.0217 2.6744 0.0802 49 1 5.5721 3.2148 -0.3002 50 1 5.2194 2.8701 1.4769 51 1 3.9332 -1.6415 -1.0662 52 1 4.0286 -0.1659 -0.0708 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485817543.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:06 Heat of formation + Delta-G solvation = -15.187948 kcal Electronic energy + Delta-G solvation = -32380.844387 eV Core-core repulsion = 28382.253670 eV Total energy + Delta-G solvation = -3998.590717 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.87582 -39.69997 -38.16089 -37.10814 -35.12971 -34.01182 -33.28895 -31.87789 -31.30925 -29.81799 -28.44070 -26.97392 -25.32595 -24.65909 -23.56173 -22.42444 -21.75062 -21.52849 -20.28281 -19.18351 -18.55080 -17.64107 -17.25512 -17.08554 -16.26746 -16.20322 -15.63271 -15.30109 -15.00162 -14.74415 -14.31945 -14.16475 -14.03574 -13.75060 -13.62564 -13.52979 -13.45004 -13.07813 -12.74033 -12.65730 -12.40547 -12.28581 -12.20703 -11.81589 -11.66451 -11.64452 -11.58366 -11.16896 -11.07296 -11.03253 -10.90107 -10.82053 -10.76787 -10.31312 -10.21315 -9.99086 -9.83535 -9.63499 -9.55692 -8.94181 -8.85977 -8.41772 -7.28004 -5.80712 -3.16228 2.43713 2.62646 2.85597 3.16084 3.31538 3.37507 3.42264 3.92055 4.30818 4.35656 4.55231 4.59857 4.67735 4.69436 4.75478 4.80347 4.94884 4.99202 5.06826 5.11411 5.16535 5.22536 5.25423 5.35565 5.36725 5.49268 5.52926 5.55381 5.59903 5.65199 5.70078 5.71506 5.75443 5.80940 5.83584 5.90173 6.04884 6.05962 6.14569 6.19887 6.21191 6.25825 6.29677 6.41557 6.52652 6.74754 7.18675 7.56887 7.93753 7.99030 8.31190 8.37849 9.15932 9.88702 10.07872 11.37528 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008877 B = 0.005406 C = 0.004482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3153.551589 B = 5178.022169 C = 6245.670575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.512 3.488 3 O -0.540 6.540 4 N -0.612 5.612 5 C 0.101 3.899 6 C -0.138 4.138 7 C -0.101 4.101 8 C -0.128 4.128 9 H 0.102 0.898 10 C 0.522 3.478 11 O -0.542 6.542 12 N -0.593 5.593 13 C 0.089 3.911 14 C 0.148 3.852 15 H 0.099 0.901 16 C 0.145 3.855 17 N -0.751 5.751 18 C -0.243 4.243 19 H 0.091 0.909 20 C 0.008 3.992 21 N -0.932 5.932 22 Si 0.879 3.121 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.280 1.280 26 C -0.163 4.163 27 C -0.182 4.182 28 C -0.164 4.164 29 C 0.120 3.880 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.049 0.951 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.039 0.961 43 H 0.040 0.960 44 H 0.359 0.641 45 H 0.260 0.740 46 H 0.104 0.896 47 H 0.108 0.892 48 H 0.090 0.910 49 H 0.092 0.908 50 H 0.099 0.901 51 H 0.072 0.928 52 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.066 0.131 -19.061 22.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.301 3.699 3 O -0.416 6.416 4 N -0.346 5.346 5 C -0.021 4.021 6 C -0.176 4.176 7 C -0.139 4.139 8 C -0.151 4.151 9 H 0.120 0.880 10 C 0.309 3.691 11 O -0.420 6.420 12 N -0.324 5.324 13 C -0.054 4.054 14 C 0.045 3.955 15 H 0.116 0.884 16 C 0.017 3.983 17 N -0.397 5.397 18 C -0.373 4.373 19 H 0.109 0.891 20 C -0.188 4.188 21 N -0.579 5.579 22 Si 0.709 3.291 23 H -0.210 1.210 24 H -0.216 1.216 25 H -0.206 1.206 26 C -0.183 4.183 27 C -0.219 4.219 28 C -0.202 4.202 29 C -0.003 4.003 30 H 0.101 0.899 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.068 0.932 40 H 0.097 0.903 41 H 0.092 0.908 42 H 0.057 0.943 43 H 0.058 0.942 44 H 0.191 0.809 45 H 0.070 0.930 46 H 0.122 0.878 47 H 0.126 0.874 48 H 0.108 0.892 49 H 0.111 0.889 50 H 0.117 0.883 51 H 0.090 0.910 52 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -10.381 0.252 -19.043 21.690 hybrid contribution -0.561 -1.235 -0.061 1.358 sum -10.941 -0.984 -19.104 22.037 Atomic orbital electron populations 1.22037 0.91845 1.04570 1.05369 1.20832 0.90661 0.83022 0.75429 1.90740 1.70474 1.30834 1.49590 1.48152 1.06846 1.06428 1.73220 1.21956 0.96838 0.84132 0.99206 1.21973 0.96038 1.00744 0.98851 1.21344 0.94059 0.94728 1.03752 1.21849 0.92323 0.99401 1.01478 0.87982 1.20337 0.88462 0.83380 0.76956 1.90659 1.77059 1.27773 1.46481 1.47752 1.07073 1.09849 1.67760 1.21590 0.79317 1.03302 1.01168 1.21170 0.98856 0.81426 0.94096 0.88360 1.21135 0.98445 0.92593 0.86149 1.42622 1.71841 1.18706 1.06488 1.19016 1.31571 1.03697 0.82982 0.89093 1.24624 1.00842 0.97961 0.95333 1.69696 1.52095 1.34898 1.01247 0.86637 0.79978 0.85184 0.77256 1.20979 1.21595 1.20606 1.22520 1.06064 0.90248 0.99436 1.23205 0.92832 1.02370 1.03447 1.22932 0.97036 0.96706 1.03506 1.21702 0.79689 1.02187 0.96748 0.89906 0.88627 0.88736 0.88840 0.90997 0.90994 0.89965 0.90874 0.90573 0.93242 0.90335 0.90807 0.94315 0.94229 0.80865 0.93035 0.87828 0.87422 0.89156 0.88919 0.88296 0.90963 0.87650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.29 10.11 36.00 0.36 -0.93 16 2 C 0.51 6.02 7.80 -10.98 -0.09 5.93 16 3 O -0.54 -8.52 16.52 5.55 0.09 -8.42 16 4 N -0.61 -6.69 2.97 -172.50 -0.51 -7.20 16 5 C 0.10 0.79 6.30 -3.71 -0.02 0.77 16 6 C -0.14 -1.33 6.08 -26.61 -0.16 -1.49 16 7 C -0.10 -1.31 4.55 -26.69 -0.12 -1.43 16 8 C -0.13 -1.88 1.81 -91.43 -0.17 -2.05 16 9 H 0.10 1.70 7.10 -51.93 -0.37 1.33 16 10 C 0.52 8.89 6.80 -10.99 -0.07 8.82 16 11 O -0.54 -10.50 15.58 5.55 0.09 -10.42 16 12 N -0.59 -9.67 2.21 -173.94 -0.38 -10.05 16 13 C 0.09 1.38 9.93 59.84 0.59 1.97 16 14 C 0.15 2.32 1.81 -67.93 -0.12 2.19 16 15 H 0.10 1.60 4.40 -51.93 -0.23 1.37 16 16 C 0.14 2.71 4.03 -4.04 -0.02 2.70 16 17 N -0.75 -17.65 5.24 -59.91 -0.31 -17.96 16 18 C -0.24 -6.82 10.47 -15.06 -0.16 -6.98 16 19 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 20 C 0.01 0.25 5.50 -17.43 -0.10 0.15 16 21 N -0.93 -29.28 13.97 55.49 0.78 -28.50 16 22 Si 0.88 22.56 27.74 -169.99 -4.71 17.85 16 23 H -0.28 -7.40 7.11 56.52 0.40 -7.00 16 24 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 25 H -0.28 -6.71 6.52 56.52 0.37 -6.34 16 26 C -0.16 -2.13 5.18 -90.62 -0.47 -2.60 16 27 C -0.18 -2.20 9.59 -26.70 -0.26 -2.46 16 28 C -0.16 -2.03 9.94 -26.69 -0.27 -2.30 16 29 C 0.12 1.52 5.39 -3.48 -0.02 1.50 16 30 H 0.08 0.40 5.14 -51.93 -0.27 0.13 16 31 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.09 0.50 5.13 -51.93 -0.27 0.23 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.08 0.94 7.98 -51.93 -0.41 0.53 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.08 1.25 6.41 -51.93 -0.33 0.92 16 41 H 0.07 1.24 7.36 -51.93 -0.38 0.86 16 42 H 0.04 0.73 5.32 -51.93 -0.28 0.45 16 43 H 0.04 0.76 7.44 -51.93 -0.39 0.37 16 44 H 0.36 8.47 5.06 -40.82 -0.21 8.27 16 45 H 0.26 7.79 8.31 -40.81 -0.34 7.45 16 46 H 0.10 1.30 8.14 -51.93 -0.42 0.87 16 47 H 0.11 1.43 5.80 -51.93 -0.30 1.12 16 48 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 49 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 50 H 0.10 1.32 7.66 -51.93 -0.40 0.92 16 51 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 52 H 0.11 1.47 4.67 -51.93 -0.24 1.23 16 LS Contribution 395.62 15.07 5.96 5.96 Total: -1.00 -35.08 395.62 -8.40 -43.48 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: -8.31 Total: 11.45 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: -1.08 Total: 3.81 kcal Atomic # 7 Polarization: -63.28 SS G_CDS: -0.43 Total: -63.71 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: 0.18 Total: -18.84 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.71 Total: 17.85 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.08 -8.40 -43.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485817543.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.291 kcal (2) G-P(sol) polarization free energy of solvation -35.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds