Wall clock time and date at job start Tue Mar 31 2020 20:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 109.47156 * 2 1 4 4 C 1.34772 * 119.99907 * 180.02562 * 3 2 1 5 5 O 1.21276 * 120.00478 * 0.02562 * 4 3 2 6 6 C 1.50708 * 119.99558 * 179.97438 * 4 3 2 7 7 C 1.53003 * 109.46807 * 180.02562 * 6 4 3 8 8 C 1.53000 * 109.46764 * 180.02562 * 7 6 4 9 9 C 1.50706 * 109.46903 * 180.02562 * 8 7 6 10 10 O 1.21284 * 119.99763 * 359.97438 * 9 8 7 11 11 N 1.34767 * 119.99928 * 179.97438 * 9 8 7 12 12 C 1.48872 * 128.06583 * 179.97438 * 11 9 8 13 13 C 1.53705 * 102.56447 * 222.40875 * 12 11 9 14 14 H 1.09003 * 104.28822 * 79.68710 * 13 12 11 15 15 C 1.48453 * 114.54594 * 194.09657 * 13 12 11 16 16 C 1.50463 * 116.14782 * 97.80352 * 15 13 12 17 17 N 1.45536 * 110.39421 * 40.48324 * 16 15 13 18 18 C 1.36938 * 118.98149 * 131.20402 * 17 16 15 19 19 H 1.08006 * 120.00148 * 209.28087 * 18 17 16 20 20 C 1.38814 * 120.00230 * 29.27554 * 18 17 16 21 21 N 1.31618 * 120.00180 * 217.36880 * 20 18 17 22 22 Si 1.86802 * 119.99511 * 37.37274 * 20 18 17 23 23 H 1.48498 * 109.47423 * 95.38321 * 22 20 18 24 24 H 1.48502 * 109.46580 * 215.38187 * 22 20 18 25 25 H 1.48496 * 109.47395 * 335.38013 * 22 20 18 26 26 C 1.44703 * 122.03683 * 311.21991 * 17 16 15 27 27 C 1.51334 * 106.31037 * 329.29172 * 13 12 11 28 28 H 1.09003 * 109.79200 * 125.42803 * 27 13 12 29 29 C 1.48250 * 128.06878 * 359.97157 * 11 9 8 30 30 H 1.09000 * 109.47398 * 60.00247 * 1 2 3 31 31 H 1.09002 * 109.46963 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.46846 * 299.99567 * 1 2 3 33 33 H 1.09004 * 109.47328 * 239.99822 * 2 1 3 34 34 H 1.09002 * 109.47285 * 120.00291 * 2 1 3 35 35 H 0.97001 * 119.99122 * 0.02562 * 3 2 1 36 36 H 1.09001 * 109.46500 * 60.00532 * 6 4 3 37 37 H 1.08990 * 109.47301 * 300.00204 * 6 4 3 38 38 H 1.08997 * 109.46974 * 59.99998 * 7 6 4 39 39 H 1.09001 * 109.46892 * 299.99947 * 7 6 4 40 40 H 1.08991 * 109.47544 * 59.99892 * 8 7 6 41 41 H 1.09001 * 109.46798 * 299.99301 * 8 7 6 42 42 H 1.08997 * 110.79163 * 104.14587 * 12 11 9 43 43 H 1.08993 * 110.79363 * 340.67932 * 12 11 9 44 44 H 1.08995 * 108.27594 * 219.47873 * 15 13 12 45 45 H 1.09004 * 108.27268 * 336.35087 * 15 13 12 46 46 H 1.09007 * 109.17178 * 280.34638 * 16 15 13 47 47 H 1.08996 * 109.44712 * 160.79797 * 16 15 13 48 48 H 0.96999 * 119.99341 * 180.02562 * 21 20 18 49 49 H 1.08988 * 108.54089 * 280.60722 * 26 17 16 50 50 H 1.09003 * 108.53286 * 163.04990 * 26 17 16 51 51 H 1.08998 * 110.32882 * 23.02626 * 29 11 9 52 52 H 1.08998 * 110.41485 * 260.84346 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3434 1.6275 -0.0005 5 8 4.1316 0.7057 -0.0015 6 6 3.8457 3.0484 -0.0011 7 6 5.3757 3.0484 -0.0023 8 6 5.8856 4.4909 -0.0022 9 6 7.3927 4.4910 -0.0040 10 8 7.9991 3.4406 -0.0047 11 7 8.0665 5.6581 -0.0048 12 6 9.5405 5.8670 -0.0060 13 6 9.7169 7.0109 1.0054 14 1 9.6597 6.5215 1.9777 15 6 11.0514 7.6605 0.9752 16 6 11.1494 8.9377 0.1857 17 7 9.9672 9.7588 0.4006 18 6 10.1265 11.0827 0.7119 19 1 9.3867 11.5886 1.3147 20 6 11.2388 11.7748 0.2529 21 7 11.8147 12.6772 1.0186 22 14 11.9182 11.4252 -1.4518 23 1 11.3605 12.4056 -2.4176 24 1 13.3985 11.5411 -1.4279 25 1 11.5359 10.0510 -1.8648 26 6 8.6285 9.2193 0.2958 27 6 8.4602 7.8499 0.9215 28 1 8.0157 7.9489 1.9119 29 6 7.5127 7.0333 -0.0047 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 1.3879 2.1184 0.0004 36 1 3.4827 3.5623 0.8889 37 1 3.4821 3.5619 -0.8910 38 1 5.7383 2.5344 -0.8924 39 1 5.7397 2.5347 0.8875 40 1 5.5230 5.0045 0.8881 41 1 5.5217 5.0049 -0.8919 42 1 9.8878 6.1677 -0.9944 43 1 10.0588 4.9694 0.3309 44 1 11.3507 7.8745 2.0011 45 1 11.7666 6.9528 0.5560 46 1 11.2330 8.6978 -0.8743 47 1 12.0341 9.4915 0.4999 48 1 12.5917 13.1609 0.6975 49 1 8.3631 9.1533 -0.7592 50 1 7.9380 9.9093 0.7809 51 1 6.4990 7.0333 0.3959 52 1 7.5207 7.4465 -1.0133 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691578708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:33 Heat of formation + Delta-G solvation = -50.884377 kcal Electronic energy + Delta-G solvation = -29162.855033 eV Core-core repulsion = 25162.716402 eV Total energy + Delta-G solvation = -4000.138630 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.37211 -40.00235 -38.54220 -35.86692 -35.72496 -34.45791 -32.87087 -31.86827 -31.29821 -30.84776 -28.95430 -27.44574 -25.66073 -24.49004 -23.48217 -22.30594 -22.09058 -21.67875 -20.66369 -19.19986 -18.13765 -17.41620 -16.99453 -16.65135 -16.46724 -16.30587 -15.89241 -15.52553 -15.42687 -14.91889 -14.65315 -14.47901 -14.06449 -13.93986 -13.43020 -13.34201 -13.27938 -13.10923 -12.80902 -12.61366 -12.36102 -12.30720 -12.23725 -12.15534 -12.09207 -11.91158 -11.67405 -11.43558 -11.31219 -11.02063 -10.86068 -10.64915 -10.48111 -10.20400 -10.04339 -9.86627 -9.77171 -9.70676 -9.50188 -9.40220 -8.70172 -8.37680 -6.95441 -6.09011 -3.29049 2.32314 2.64368 2.71461 2.99917 3.39024 3.51307 3.55833 4.29606 4.33769 4.52277 4.54844 4.56841 4.63044 4.69724 4.72679 4.82137 4.89081 4.93550 5.05893 5.09168 5.15278 5.20356 5.23608 5.31989 5.33525 5.39467 5.42449 5.52885 5.57028 5.63324 5.75615 5.81818 5.87589 5.90200 5.94688 5.98863 6.03276 6.17427 6.26342 6.34125 6.46714 6.57620 6.62419 6.74842 6.89552 7.00168 7.07281 7.60312 7.87774 7.99278 8.17083 8.30820 9.00698 9.73617 10.09209 11.05270 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.030652 B = 0.001796 C = 0.001751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.264711 B =15585.793630 C =15991.442351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.112 3.888 3 N -0.737 5.737 4 C 0.510 3.490 5 O -0.534 6.534 6 C -0.141 4.141 7 C -0.089 4.089 8 C -0.136 4.136 9 C 0.532 3.468 10 O -0.545 6.545 11 N -0.627 5.627 12 C 0.112 3.888 13 C -0.076 4.076 14 H 0.049 0.951 15 C -0.120 4.120 16 C 0.146 3.854 17 N -0.591 5.591 18 C -0.284 4.284 19 H 0.078 0.922 20 C 0.045 3.955 21 N -0.878 5.878 22 Si 0.832 3.168 23 H -0.293 1.293 24 H -0.295 1.295 25 H -0.252 1.252 26 C 0.163 3.837 27 C -0.102 4.102 28 H 0.078 0.922 29 C 0.102 3.898 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.400 0.600 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.072 0.928 43 H 0.081 0.919 44 H 0.061 0.939 45 H 0.056 0.944 46 H 0.022 0.978 47 H 0.070 0.930 48 H 0.263 0.737 49 H 0.013 0.987 50 H 0.057 0.943 51 H 0.075 0.925 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.464 -18.978 -1.935 28.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.012 4.012 3 N -0.391 5.391 4 C 0.297 3.703 5 O -0.410 6.410 6 C -0.181 4.181 7 C -0.127 4.127 8 C -0.176 4.176 9 C 0.321 3.679 10 O -0.422 6.422 11 N -0.361 5.361 12 C -0.010 4.010 13 C -0.096 4.096 14 H 0.068 0.932 15 C -0.159 4.159 16 C 0.020 3.980 17 N -0.314 5.314 18 C -0.411 4.411 19 H 0.096 0.904 20 C -0.157 4.157 21 N -0.518 5.518 22 Si 0.659 3.341 23 H -0.220 1.220 24 H -0.222 1.222 25 H -0.177 1.177 26 C 0.036 3.964 27 C -0.123 4.123 28 H 0.096 0.904 29 C -0.021 4.021 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.234 0.766 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.112 0.888 41 H 0.111 0.889 42 H 0.090 0.910 43 H 0.100 0.900 44 H 0.080 0.920 45 H 0.074 0.926 46 H 0.040 0.960 47 H 0.088 0.912 48 H 0.072 0.928 49 H 0.030 0.970 50 H 0.075 0.925 51 H 0.094 0.906 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -20.523 -20.236 -1.878 28.883 hybrid contribution 0.045 0.503 -0.954 1.080 sum -20.478 -19.732 -2.832 28.578 Atomic orbital electron populations 1.22006 0.94401 1.03311 1.02534 1.21297 0.94227 0.83174 1.02456 1.46120 1.07342 1.08915 1.76696 1.20806 0.81965 0.91984 0.75584 1.90747 1.55195 1.46612 1.48421 1.21704 0.98189 0.93634 1.04546 1.21077 0.91727 0.94724 1.05213 1.21651 0.92107 0.99413 1.04422 1.20244 0.89789 0.81947 0.75895 1.90721 1.70477 1.30473 1.50542 1.49242 1.08352 1.05755 1.72784 1.22544 0.80329 0.98272 0.99905 1.20069 0.95486 0.95052 0.98996 0.93198 1.20407 0.94616 0.98659 1.02255 1.20535 0.90915 0.90281 0.96283 1.43289 0.99346 1.06728 1.82003 1.18778 1.09265 0.85378 1.27726 0.90437 1.25219 0.96543 0.96121 0.97846 1.70139 1.19636 1.27676 1.34331 0.87669 0.77373 0.79605 0.89431 1.22025 1.22186 1.17704 1.20110 0.88222 0.91395 0.96714 1.21708 0.94660 0.96668 0.99228 0.90383 1.23082 0.97770 0.80753 1.00529 0.91940 0.90775 0.91937 0.91542 0.91536 0.76553 0.88660 0.88679 0.90377 0.90366 0.88813 0.88857 0.91006 0.90037 0.91990 0.92558 0.96038 0.91199 0.92764 0.96954 0.92498 0.90633 0.90390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.49 10.03 37.16 0.37 -0.12 16 2 C 0.11 0.65 6.39 -4.04 -0.03 0.63 16 3 N -0.74 -4.35 5.56 -60.29 -0.33 -4.68 16 4 C 0.51 4.62 7.83 -10.98 -0.09 4.53 16 5 O -0.53 -7.47 15.98 5.56 0.09 -7.39 16 6 C -0.14 -0.89 5.70 -27.88 -0.16 -1.05 16 7 C -0.09 -0.88 3.79 -26.73 -0.10 -0.98 16 8 C -0.14 -1.21 4.71 -27.88 -0.13 -1.35 16 9 C 0.53 7.27 7.92 -10.99 -0.09 7.18 16 10 O -0.54 -9.65 16.27 5.55 0.09 -9.56 16 11 N -0.63 -8.36 3.31 -168.25 -0.56 -8.92 16 12 C 0.11 1.60 6.47 -2.36 -0.02 1.59 16 13 C -0.08 -1.16 2.49 -93.31 -0.23 -1.39 16 14 H 0.05 0.75 7.98 -51.93 -0.41 0.34 16 15 C -0.12 -2.03 5.50 -30.22 -0.17 -2.20 16 16 C 0.15 3.04 4.49 -5.83 -0.03 3.01 16 17 N -0.59 -13.30 2.76 -177.85 -0.49 -13.79 16 18 C -0.28 -7.59 9.63 -15.06 -0.14 -7.74 16 19 H 0.08 2.21 7.96 -52.48 -0.42 1.79 16 20 C 0.04 1.24 4.67 -17.43 -0.08 1.16 16 21 N -0.88 -25.89 13.97 55.49 0.78 -25.11 16 22 Si 0.83 20.59 26.70 -169.99 -4.54 16.05 16 23 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 24 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 25 H -0.25 -5.92 4.93 56.52 0.28 -5.64 16 26 C 0.16 2.92 6.01 -5.76 -0.03 2.89 16 27 C -0.10 -1.48 3.45 -90.81 -0.31 -1.80 16 28 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 29 C 0.10 1.19 6.41 -1.67 -0.01 1.18 16 30 H 0.06 0.16 8.14 -51.93 -0.42 -0.27 16 31 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.06 0.16 8.14 -51.93 -0.42 -0.27 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.40 1.12 8.47 -40.82 -0.35 0.77 16 36 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.95 8.06 -51.93 -0.42 0.53 16 39 H 0.08 0.95 8.06 -51.93 -0.42 0.53 16 40 H 0.09 0.66 7.96 -51.93 -0.41 0.24 16 41 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 43 H 0.08 1.20 7.89 -51.93 -0.41 0.79 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.06 0.84 7.83 -51.93 -0.41 0.43 16 46 H 0.02 0.46 6.22 -51.92 -0.32 0.14 16 47 H 0.07 1.61 6.11 -51.93 -0.32 1.29 16 48 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 49 H 0.01 0.22 6.91 -51.94 -0.36 -0.13 16 50 H 0.06 1.02 7.78 -51.93 -0.40 0.62 16 51 H 0.08 0.67 7.36 -51.93 -0.38 0.29 16 52 H 0.08 0.90 7.04 -51.93 -0.37 0.54 16 LS Contribution 402.72 15.07 6.07 6.07 Total: -1.00 -35.41 402.72 -9.45 -44.86 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -9.30 Total: -3.08 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: -1.24 Total: 5.55 kcal Atomic # 7 Polarization: -51.90 SS G_CDS: -0.61 Total: -52.50 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: 0.18 Total: -16.95 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.54 Total: 16.05 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.41 -9.45 -44.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691578708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.028 kcal (2) G-P(sol) polarization free energy of solvation -35.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds