Wall clock time and date at job start Tue Mar 31 2020 20:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 114.00055 * 2 1 4 4 H 1.09007 * 112.88435 * 341.34430 * 3 2 1 5 5 C 1.53951 * 113.66263 * 112.80806 * 3 2 1 6 6 C 1.53954 * 87.29503 * 139.20945 * 5 3 2 7 7 H 1.08991 * 113.74871 * 89.75085 * 6 5 3 8 8 N 1.46500 * 113.66210 * 220.79982 * 6 5 3 9 9 C 1.34781 * 119.99808 * 252.18298 * 8 6 5 10 10 O 1.21585 * 119.99864 * 0.02562 * 9 8 6 11 11 N 1.34774 * 120.00086 * 179.97438 * 9 8 6 12 12 C 1.46500 * 120.00131 * 180.02562 * 11 9 8 13 13 C 1.53040 * 109.45862 * 275.07094 * 12 11 9 14 14 C 1.53197 * 109.31163 * 178.61484 * 13 12 11 15 15 N 1.46924 * 108.77611 * 54.62952 * 14 13 12 16 16 C 1.36936 * 120.62870 * 126.41257 * 15 14 13 17 17 H 1.07996 * 120.00361 * 207.65818 * 16 15 14 18 18 C 1.38817 * 119.99799 * 27.66411 * 16 15 14 19 19 N 1.31614 * 120.00370 * 17.37305 * 18 16 15 20 20 Si 1.86803 * 119.99482 * 197.37652 * 18 16 15 21 21 H 1.48489 * 109.47712 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.46766 * 120.00342 * 20 18 16 23 23 H 1.48505 * 109.46776 * 239.99558 * 20 18 16 24 24 C 1.46924 * 118.74177 * 306.39540 * 15 14 13 25 25 C 1.53034 * 109.45915 * 154.99990 * 12 11 9 26 26 C 1.52906 * 113.66383 * 209.99641 * 3 2 1 27 27 C 1.52903 * 121.13828 * 346.35089 * 26 3 2 28 28 C 1.53954 * 86.78328 * 100.81692 * 27 26 3 29 29 C 1.52917 * 121.13136 * 94.91028 * 26 3 2 30 30 H 1.08995 * 109.47210 * 300.00261 * 1 2 3 31 31 H 1.09000 * 109.46620 * 60.00215 * 1 2 3 32 32 H 1.08999 * 109.47040 * 180.02562 * 1 2 3 33 33 H 1.08993 * 113.58088 * 24.60560 * 5 3 2 34 34 H 1.09000 * 113.58411 * 253.80985 * 5 3 2 35 35 H 0.96997 * 120.00334 * 72.18458 * 8 6 5 36 36 H 0.97002 * 119.99531 * 359.72571 * 11 9 8 37 37 H 1.08998 * 109.45846 * 35.02727 * 12 11 9 38 38 H 1.08993 * 109.49734 * 298.56183 * 13 12 11 39 39 H 1.09001 * 109.49843 * 58.66263 * 13 12 11 40 40 H 1.09009 * 109.58332 * 294.84763 * 14 13 12 41 41 H 1.08999 * 109.58759 * 174.42282 * 14 13 12 42 42 H 0.96995 * 120.00245 * 180.02562 * 19 18 16 43 43 H 1.09001 * 109.58595 * 293.81878 * 24 15 14 44 44 H 1.09002 * 109.70636 * 173.46087 * 24 15 14 45 45 H 1.09002 * 109.50262 * 301.33302 * 25 12 11 46 46 H 1.08999 * 109.49703 * 61.40315 * 25 12 11 47 47 H 1.08998 * 113.66088 * 215.29089 * 27 26 3 48 48 H 1.09003 * 113.66109 * 346.34331 * 27 26 3 49 49 H 1.09000 * 113.57850 * 270.12686 * 28 27 26 50 50 H 1.08992 * 113.57739 * 139.33751 * 28 27 26 51 51 H 1.08998 * 113.66578 * 13.65441 * 29 26 3 52 52 H 1.09007 * 113.65904 * 144.61979 * 29 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3134 2.0797 -0.3212 5 6 2.7609 1.6476 1.2998 6 6 3.8398 2.3026 0.4183 7 1 3.6593 3.3581 0.2151 8 7 5.2083 2.0348 0.8673 9 6 5.9337 3.0157 1.4403 10 8 5.4520 4.1227 1.5849 11 7 7.1925 2.7692 1.8538 12 6 7.9807 3.8352 2.4771 13 6 8.6568 4.6723 1.3888 14 6 9.4520 5.8066 2.0429 15 7 10.3806 5.2287 3.0240 16 6 11.7181 5.5180 2.9733 17 1 12.4387 4.8090 3.3531 18 6 12.1476 6.7227 2.4337 19 7 11.2992 7.7183 2.2878 20 14 13.9300 6.9308 1.9147 21 1 14.6734 5.6734 2.1815 22 1 13.9899 7.2437 0.4643 23 1 14.5438 8.0413 2.6863 24 6 9.8468 4.3349 4.0607 25 6 9.0472 3.2170 3.3840 26 6 3.3679 1.3728 -0.7002 27 6 4.1411 0.1008 -1.0500 28 6 3.6189 0.2824 -2.4868 29 6 3.4804 1.7823 -2.1692 30 1 -0.3633 0.5138 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.1145 0.7711 1.8427 34 1 2.2299 2.3549 1.9369 35 1 5.5925 1.1516 0.7522 36 1 7.5750 1.8847 1.7427 37 1 7.3248 4.4725 3.0701 38 1 9.3319 4.0410 0.8111 39 1 7.8978 5.0932 0.7294 40 1 8.7676 6.4898 2.5459 41 1 10.0146 6.3454 1.2804 42 1 11.5993 8.5599 1.9104 43 1 9.1946 4.8981 4.7283 44 1 10.6684 3.9024 4.6317 45 1 8.5661 2.6022 4.1448 46 1 9.7182 2.5989 2.7875 47 1 5.2221 0.2075 -0.9606 48 1 3.7599 -0.7927 -0.5555 49 1 2.6661 -0.2142 -2.6704 50 1 4.3640 0.0657 -3.2521 51 1 2.5716 2.2321 -2.5688 52 1 4.3751 2.3630 -2.3941 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590925310.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:54 Heat of formation + Delta-G solvation = -8.498660 kcal Electronic energy + Delta-G solvation = -30092.076985 eV Core-core repulsion = 26093.776337 eV Total energy + Delta-G solvation = -3998.300648 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.30147 -39.57285 -37.48077 -37.22684 -35.19209 -34.27674 -32.95120 -31.79343 -29.95068 -29.30269 -27.26841 -26.08460 -25.27754 -24.86083 -23.98516 -22.19791 -21.96094 -21.24313 -20.51555 -19.40888 -18.79930 -17.97090 -17.32866 -16.72650 -16.20246 -16.03191 -15.64490 -15.09169 -14.99779 -14.78548 -14.52343 -14.10601 -13.97767 -13.71397 -13.45640 -13.25379 -12.97032 -12.78356 -12.61049 -12.47135 -12.34269 -12.27609 -12.03132 -11.68635 -11.45284 -11.42049 -11.09826 -10.91431 -10.83256 -10.71549 -10.58801 -10.49292 -10.33698 -10.18973 -10.04777 -9.91673 -9.71983 -9.69194 -9.50772 -9.01849 -8.57230 -8.35312 -6.65964 -5.75763 -3.18228 2.77403 3.38767 3.39740 3.45469 3.46581 3.48720 4.01246 4.16073 4.27878 4.43212 4.45404 4.51717 4.56287 4.61104 4.83107 4.99103 5.02236 5.14989 5.27063 5.27895 5.34622 5.36639 5.43507 5.48138 5.50128 5.56694 5.65052 5.68973 5.69869 5.74581 5.87322 5.89504 6.05133 6.13925 6.15029 6.28196 6.41888 6.50310 6.53552 6.64973 6.69367 6.81533 6.85546 6.95589 6.99993 7.18073 7.43348 7.72492 7.82626 8.20936 8.47725 8.82929 9.23805 9.87381 10.44050 11.32713 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.025334 B = 0.002112 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.969054 B =13253.491813 C =13620.266598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.370 6.370 3 C 0.089 3.911 4 H 0.092 0.908 5 C -0.166 4.166 6 C 0.161 3.839 7 H 0.119 0.881 8 N -0.736 5.736 9 C 0.702 3.298 10 O -0.589 6.589 11 N -0.740 5.740 12 C 0.169 3.831 13 C -0.146 4.146 14 C 0.173 3.827 15 N -0.593 5.593 16 C -0.253 4.253 17 H 0.066 0.934 18 C 0.001 3.999 19 N -0.901 5.901 20 Si 0.901 3.099 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.291 1.291 24 C 0.149 3.851 25 C -0.138 4.138 26 C -0.112 4.112 27 C -0.109 4.109 28 C -0.134 4.134 29 C -0.126 4.126 30 H 0.042 0.958 31 H 0.041 0.959 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.075 0.925 35 H 0.394 0.606 36 H 0.389 0.611 37 H 0.081 0.919 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.020 0.980 41 H 0.089 0.911 42 H 0.253 0.747 43 H 0.020 0.980 44 H 0.058 0.942 45 H 0.054 0.946 46 H 0.062 0.938 47 H 0.082 0.918 48 H 0.078 0.922 49 H 0.080 0.920 50 H 0.066 0.934 51 H 0.067 0.933 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.371 -18.040 -6.955 28.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.288 6.288 3 C 0.030 3.970 4 H 0.110 0.890 5 C -0.206 4.206 6 C 0.054 3.946 7 H 0.136 0.864 8 N -0.391 5.391 9 C 0.402 3.598 10 O -0.467 6.467 11 N -0.393 5.393 12 C 0.065 3.935 13 C -0.186 4.186 14 C 0.047 3.953 15 N -0.316 5.316 16 C -0.382 4.382 17 H 0.084 0.916 18 C -0.198 4.198 19 N -0.545 5.545 20 Si 0.731 3.269 21 H -0.203 1.203 22 H -0.216 1.216 23 H -0.218 1.218 24 C 0.021 3.979 25 C -0.178 4.178 26 C -0.114 4.114 27 C -0.147 4.147 28 C -0.172 4.172 29 C -0.164 4.164 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.103 0.897 33 H 0.111 0.889 34 H 0.094 0.906 35 H 0.228 0.772 36 H 0.222 0.778 37 H 0.099 0.901 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.039 0.961 41 H 0.107 0.893 42 H 0.063 0.937 43 H 0.038 0.962 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.081 0.919 47 H 0.100 0.900 48 H 0.097 0.903 49 H 0.099 0.901 50 H 0.085 0.915 51 H 0.086 0.914 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -20.630 -16.977 -6.854 27.583 hybrid contribution 0.955 -0.434 -0.411 1.127 sum -19.674 -17.412 -7.265 27.258 Atomic orbital electron populations 1.22796 0.81252 1.02696 0.99989 1.87924 1.19427 1.26954 1.94524 1.23164 0.92414 0.85390 0.95996 0.88976 1.23978 0.97784 1.01498 0.97303 1.21738 0.79975 0.99739 0.93159 0.86369 1.44996 1.14809 1.13372 1.65905 1.16043 0.81079 0.84309 0.78358 1.90921 1.71519 1.22282 1.61962 1.45531 1.13185 1.15103 1.65495 1.20895 0.91170 0.87446 0.93969 1.22569 0.98820 0.99552 0.97707 1.20769 0.90821 0.91019 0.92686 1.44119 1.04637 1.53771 1.29031 1.19214 0.82256 0.98884 1.37865 0.91605 1.25057 0.97543 0.94871 1.02285 1.70048 1.34075 1.02527 1.47854 0.86240 0.84877 0.77588 0.78161 1.20287 1.21589 1.21758 1.20834 0.95546 0.90507 0.90968 1.22341 0.97291 0.99735 0.98476 1.23295 0.95700 0.97861 0.94512 1.22406 0.99037 0.96569 0.96671 1.22765 1.01422 0.96317 0.96645 1.22780 1.02428 0.96884 0.94273 0.93971 0.94056 0.89737 0.88932 0.90633 0.77169 0.77799 0.90129 0.92852 0.92855 0.96148 0.89287 0.93652 0.96200 0.92373 0.92700 0.91936 0.89986 0.90334 0.90105 0.91545 0.91406 0.89453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.85 101.05 1.10 1.27 16 2 O -0.37 -3.13 9.90 -35.23 -0.35 -3.48 16 3 C 0.09 0.72 4.19 -26.28 -0.11 0.61 16 4 H 0.09 0.64 7.87 -51.92 -0.41 0.24 16 5 C -0.17 -1.54 7.72 -25.75 -0.20 -1.74 16 6 C 0.16 1.67 4.12 -67.48 -0.28 1.39 16 7 H 0.12 1.46 7.46 -51.93 -0.39 1.07 16 8 N -0.74 -8.21 5.25 -58.23 -0.31 -8.51 16 9 C 0.70 10.80 8.53 -86.92 -0.74 10.06 16 10 O -0.59 -11.70 15.60 5.29 0.08 -11.62 16 11 N -0.74 -10.65 5.08 -58.64 -0.30 -10.95 16 12 C 0.17 3.01 2.41 -67.89 -0.16 2.85 16 13 C -0.15 -2.98 5.65 -26.61 -0.15 -3.13 16 14 C 0.17 4.29 5.31 -3.71 -0.02 4.27 16 15 N -0.59 -14.95 2.99 -172.31 -0.52 -15.46 16 16 C -0.25 -6.94 9.59 -15.06 -0.14 -7.09 16 17 H 0.07 1.77 7.89 -52.49 -0.41 1.35 16 18 C 0.00 0.03 4.91 -17.43 -0.09 -0.06 16 19 N -0.90 -26.56 11.19 55.49 0.62 -25.94 16 20 Si 0.90 21.80 29.59 -169.99 -5.03 16.77 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 C 0.15 3.09 6.51 -3.71 -0.02 3.07 16 25 C -0.14 -2.33 5.55 -26.61 -0.15 -2.48 16 26 C -0.11 -0.94 1.07 -154.71 -0.17 -1.10 16 27 C -0.11 -0.84 6.86 -26.28 -0.18 -1.02 16 28 C -0.13 -0.99 8.08 -25.75 -0.21 -1.19 16 29 C -0.13 -1.01 7.84 -26.28 -0.21 -1.21 16 30 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.39 3.43 7.05 -40.82 -0.29 3.14 16 36 H 0.39 4.39 8.61 -40.82 -0.35 4.04 16 37 H 0.08 1.63 7.58 -51.93 -0.39 1.24 16 38 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.02 0.54 8.14 -51.92 -0.42 0.12 16 41 H 0.09 2.46 6.04 -51.93 -0.31 2.14 16 42 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.06 1.16 7.94 -51.93 -0.41 0.75 16 45 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.08 0.60 7.03 -51.93 -0.36 0.23 16 48 H 0.08 0.64 7.65 -51.93 -0.40 0.24 16 49 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 51 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 52 H 0.09 0.77 8.14 -51.92 -0.42 0.34 16 LS Contribution 405.67 15.07 6.11 6.11 Total: -1.00 -32.73 405.67 -10.62 -43.35 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -9.21 Total: 5.24 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: -1.73 Total: 4.49 kcal Atomic # 7 Polarization: -60.36 SS G_CDS: -0.50 Total: -60.86 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -0.27 Total: -15.10 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.77 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.73 -10.62 -43.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590925310.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.848 kcal (2) G-P(sol) polarization free energy of solvation -32.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds