Wall clock time and date at job start Tue Mar 31 2020 20:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 114.00055 * 2 1 4 4 H 1.09007 * 112.88435 * 341.34430 * 3 2 1 5 5 C 1.53951 * 113.66263 * 112.80806 * 3 2 1 6 6 C 1.53954 * 87.29503 * 139.20945 * 5 3 2 7 7 H 1.08991 * 113.74871 * 89.75085 * 6 5 3 8 8 N 1.46500 * 113.66210 * 220.79982 * 6 5 3 9 9 C 1.34781 * 119.99808 * 252.18298 * 8 6 5 10 10 O 1.21585 * 119.99864 * 0.02562 * 9 8 6 11 11 N 1.34774 * 120.00086 * 179.97438 * 9 8 6 12 12 C 1.46500 * 120.00131 * 180.02562 * 11 9 8 13 13 C 1.53040 * 109.45862 * 275.07094 * 12 11 9 14 14 C 1.53197 * 109.31163 * 178.61484 * 13 12 11 15 15 N 1.46924 * 108.77611 * 54.62952 * 14 13 12 16 16 C 1.36936 * 120.62870 * 126.41257 * 15 14 13 17 17 H 1.07996 * 120.00361 * 207.65818 * 16 15 14 18 18 C 1.38817 * 119.99799 * 27.66411 * 16 15 14 19 19 N 1.31614 * 120.00370 * 17.37305 * 18 16 15 20 20 Si 1.86803 * 119.99482 * 197.37652 * 18 16 15 21 21 H 1.48489 * 109.47712 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.46766 * 120.00342 * 20 18 16 23 23 H 1.48505 * 109.46776 * 239.99558 * 20 18 16 24 24 C 1.46924 * 118.74177 * 306.39540 * 15 14 13 25 25 C 1.53034 * 109.45915 * 154.99990 * 12 11 9 26 26 C 1.52906 * 113.66383 * 209.99641 * 3 2 1 27 27 C 1.52903 * 121.13828 * 346.35089 * 26 3 2 28 28 C 1.53954 * 86.78328 * 100.81692 * 27 26 3 29 29 C 1.52917 * 121.13136 * 94.91028 * 26 3 2 30 30 H 1.08995 * 109.47210 * 300.00261 * 1 2 3 31 31 H 1.09000 * 109.46620 * 60.00215 * 1 2 3 32 32 H 1.08999 * 109.47040 * 180.02562 * 1 2 3 33 33 H 1.08993 * 113.58088 * 24.60560 * 5 3 2 34 34 H 1.09000 * 113.58411 * 253.80985 * 5 3 2 35 35 H 0.96997 * 120.00334 * 72.18458 * 8 6 5 36 36 H 0.97002 * 119.99531 * 359.72571 * 11 9 8 37 37 H 1.08998 * 109.45846 * 35.02727 * 12 11 9 38 38 H 1.08993 * 109.49734 * 298.56183 * 13 12 11 39 39 H 1.09001 * 109.49843 * 58.66263 * 13 12 11 40 40 H 1.09009 * 109.58332 * 294.84763 * 14 13 12 41 41 H 1.08999 * 109.58759 * 174.42282 * 14 13 12 42 42 H 0.96995 * 120.00245 * 180.02562 * 19 18 16 43 43 H 1.09001 * 109.58595 * 293.81878 * 24 15 14 44 44 H 1.09002 * 109.70636 * 173.46087 * 24 15 14 45 45 H 1.09002 * 109.50262 * 301.33302 * 25 12 11 46 46 H 1.08999 * 109.49703 * 61.40315 * 25 12 11 47 47 H 1.08998 * 113.66088 * 215.29089 * 27 26 3 48 48 H 1.09003 * 113.66109 * 346.34331 * 27 26 3 49 49 H 1.09000 * 113.57850 * 270.12686 * 28 27 26 50 50 H 1.08992 * 113.57739 * 139.33751 * 28 27 26 51 51 H 1.08998 * 113.66578 * 13.65441 * 29 26 3 52 52 H 1.09007 * 113.65904 * 144.61979 * 29 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3134 2.0797 -0.3212 5 6 2.7609 1.6476 1.2998 6 6 3.8398 2.3026 0.4183 7 1 3.6593 3.3581 0.2151 8 7 5.2083 2.0348 0.8673 9 6 5.9337 3.0157 1.4403 10 8 5.4520 4.1227 1.5849 11 7 7.1925 2.7692 1.8538 12 6 7.9807 3.8352 2.4771 13 6 8.6568 4.6723 1.3888 14 6 9.4520 5.8066 2.0429 15 7 10.3806 5.2287 3.0240 16 6 11.7181 5.5180 2.9733 17 1 12.4387 4.8090 3.3531 18 6 12.1476 6.7227 2.4337 19 7 11.2992 7.7183 2.2878 20 14 13.9300 6.9308 1.9147 21 1 14.6734 5.6734 2.1815 22 1 13.9899 7.2437 0.4643 23 1 14.5438 8.0413 2.6863 24 6 9.8468 4.3349 4.0607 25 6 9.0472 3.2170 3.3840 26 6 3.3679 1.3728 -0.7002 27 6 4.1411 0.1008 -1.0500 28 6 3.6189 0.2824 -2.4868 29 6 3.4804 1.7823 -2.1692 30 1 -0.3633 0.5138 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.1145 0.7711 1.8427 34 1 2.2299 2.3549 1.9369 35 1 5.5925 1.1516 0.7522 36 1 7.5750 1.8847 1.7427 37 1 7.3248 4.4725 3.0701 38 1 9.3319 4.0410 0.8111 39 1 7.8978 5.0932 0.7294 40 1 8.7676 6.4898 2.5459 41 1 10.0146 6.3454 1.2804 42 1 11.5993 8.5599 1.9104 43 1 9.1946 4.8981 4.7283 44 1 10.6684 3.9024 4.6317 45 1 8.5661 2.6022 4.1448 46 1 9.7182 2.5989 2.7875 47 1 5.2221 0.2075 -0.9606 48 1 3.7599 -0.7927 -0.5555 49 1 2.6661 -0.2142 -2.6704 50 1 4.3640 0.0657 -3.2521 51 1 2.5716 2.2321 -2.5688 52 1 4.3751 2.3630 -2.3941 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590925310.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:52 Heat of formation + Delta-G solvation = -30.110266 kcal Electronic energy + Delta-G solvation = -30093.014134 eV Core-core repulsion = 26093.776337 eV Total energy + Delta-G solvation = -3999.237797 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.08098 -40.79783 -39.01975 -37.89865 -36.19249 -35.78378 -34.22328 -33.35574 -31.68226 -31.00480 -27.81341 -26.98354 -26.67051 -25.68736 -24.95904 -23.89491 -23.52798 -21.98599 -21.76733 -21.05457 -19.69549 -19.11682 -18.60304 -18.04238 -17.12870 -16.79844 -16.70320 -16.59314 -16.16295 -15.87593 -15.57967 -15.35482 -15.34223 -14.99291 -14.83421 -14.69928 -14.41318 -14.01693 -13.91224 -13.36418 -13.18485 -13.17506 -13.02746 -12.98496 -12.65341 -12.60780 -12.57696 -12.38222 -12.10494 -12.03995 -12.01203 -11.84540 -11.53102 -11.46721 -11.42246 -11.30830 -11.18786 -11.07098 -10.58632 -10.31512 -10.18151 -9.67196 -8.71469 -7.86718 -5.32602 1.47231 1.48867 1.59832 1.68714 2.17523 2.52126 2.80757 3.26699 3.31116 3.38805 3.50331 3.63104 3.68115 3.79003 3.86815 3.89993 3.96368 4.11764 4.25412 4.36073 4.44159 4.49166 4.51399 4.58689 4.60633 4.68405 4.71117 4.81450 4.83656 4.86175 4.89403 4.91205 4.97440 5.00812 5.07932 5.10099 5.11456 5.14694 5.19011 5.33135 5.39531 5.47111 5.53724 5.60542 5.63247 5.65207 5.70619 6.07239 6.29534 6.39148 7.13589 7.15837 7.64453 7.85003 8.37794 9.20507 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.025334 B = 0.002112 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.969054 B =13253.491813 C =13620.266598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.383 6.383 3 C 0.096 3.904 4 H 0.103 0.897 5 C -0.163 4.163 6 C 0.150 3.850 7 H 0.096 0.904 8 N -0.716 5.716 9 C 0.699 3.301 10 O -0.637 6.637 11 N -0.726 5.726 12 C 0.182 3.818 13 C -0.129 4.129 14 C 0.183 3.817 15 N -0.609 5.609 16 C -0.259 4.259 17 H 0.075 0.925 18 C -0.057 4.057 19 N -0.939 5.939 20 Si 0.969 3.031 21 H -0.261 1.261 22 H -0.292 1.292 23 H -0.294 1.294 24 C 0.141 3.859 25 C -0.120 4.120 26 C -0.106 4.106 27 C -0.107 4.107 28 C -0.128 4.128 29 C -0.129 4.129 30 H 0.045 0.955 31 H 0.050 0.950 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.070 0.930 35 H 0.409 0.591 36 H 0.410 0.590 37 H 0.054 0.946 38 H 0.060 0.940 39 H 0.042 0.958 40 H -0.012 1.012 41 H 0.055 0.945 42 H 0.249 0.751 43 H 0.011 0.989 44 H 0.069 0.931 45 H 0.090 0.910 46 H 0.076 0.924 47 H 0.088 0.912 48 H 0.077 0.923 49 H 0.083 0.917 50 H 0.072 0.928 51 H 0.074 0.926 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.567 -21.300 -7.380 30.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.302 6.302 3 C 0.037 3.963 4 H 0.120 0.880 5 C -0.202 4.202 6 C 0.043 3.957 7 H 0.114 0.886 8 N -0.371 5.371 9 C 0.399 3.601 10 O -0.519 6.519 11 N -0.380 5.380 12 C 0.076 3.924 13 C -0.169 4.169 14 C 0.056 3.944 15 N -0.333 5.333 16 C -0.389 4.389 17 H 0.092 0.908 18 C -0.252 4.252 19 N -0.585 5.585 20 Si 0.797 3.203 21 H -0.186 1.186 22 H -0.219 1.219 23 H -0.221 1.221 24 C 0.015 3.985 25 C -0.160 4.160 26 C -0.107 4.107 27 C -0.144 4.144 28 C -0.165 4.165 29 C -0.166 4.166 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.115 0.885 33 H 0.111 0.889 34 H 0.089 0.911 35 H 0.247 0.753 36 H 0.246 0.754 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.061 0.939 40 H 0.006 0.994 41 H 0.073 0.927 42 H 0.058 0.942 43 H 0.029 0.971 44 H 0.087 0.913 45 H 0.109 0.891 46 H 0.094 0.906 47 H 0.106 0.894 48 H 0.096 0.904 49 H 0.102 0.898 50 H 0.091 0.909 51 H 0.092 0.908 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -20.841 -20.346 -7.282 30.022 hybrid contribution 0.922 0.568 -0.240 1.109 sum -19.920 -19.777 -7.522 29.061 Atomic orbital electron populations 1.22970 0.79910 1.03760 1.00662 1.87897 1.20929 1.26813 1.94520 1.23081 0.92500 0.85822 0.94852 0.87954 1.23930 0.97412 1.01137 0.97709 1.21812 0.79658 0.99204 0.94984 0.88640 1.44804 1.14764 1.13131 1.64414 1.16209 0.81295 0.84245 0.78304 1.90901 1.72549 1.24587 1.63830 1.45108 1.12686 1.15175 1.65046 1.20487 0.91119 0.87871 0.92919 1.22308 0.98118 0.98446 0.98068 1.20472 0.90175 0.91950 0.91805 1.44364 1.04221 1.54348 1.30346 1.19609 0.83542 0.98794 1.36929 0.90760 1.25883 1.01587 0.94750 1.02974 1.70219 1.36089 1.02927 1.49298 0.85178 0.80177 0.77784 0.77129 1.18551 1.21923 1.22131 1.21047 0.96242 0.90820 0.90387 1.22132 0.96563 0.98362 0.98930 1.23270 0.95797 0.97695 0.93982 1.22429 0.99261 0.95914 0.96829 1.22730 1.01735 0.95486 0.96565 1.22787 1.02363 0.97474 0.93988 0.93610 0.93092 0.88548 0.88897 0.91108 0.75331 0.75367 0.92786 0.92090 0.93902 0.99397 0.92672 0.94210 0.97098 0.91281 0.89112 0.90566 0.89406 0.90392 0.89816 0.90924 0.90767 0.90383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 10.85 113.37 1.23 1.45 16 2 O -0.38 -5.68 9.90 -148.98 -1.48 -7.16 16 3 C 0.10 1.40 4.19 30.88 0.13 1.53 16 4 H 0.10 1.27 7.87 -2.38 -0.02 1.26 16 5 C -0.16 -2.83 7.72 31.23 0.24 -2.59 16 6 C 0.15 3.01 4.12 45.28 0.19 3.20 16 7 H 0.10 2.41 7.46 -2.39 -0.02 2.39 16 8 N -0.72 -14.96 5.25 -456.41 -2.40 -17.36 16 9 C 0.70 20.94 8.53 179.05 1.53 22.47 16 10 O -0.64 -25.76 15.60 -3.98 -0.06 -25.82 16 11 N -0.73 -19.47 5.08 -457.70 -2.33 -21.80 16 12 C 0.18 6.30 2.41 45.02 0.11 6.41 16 13 C -0.13 -5.32 5.65 30.67 0.17 -5.14 16 14 C 0.18 9.40 5.31 86.36 0.46 9.86 16 15 N -0.61 -30.99 2.99 -699.07 -2.09 -33.08 16 16 C -0.26 -14.22 9.59 84.03 0.81 -13.42 16 17 H 0.07 3.89 7.89 -2.91 -0.02 3.87 16 18 C -0.06 -3.24 4.91 84.86 0.42 -2.82 16 19 N -0.94 -57.37 11.19 21.65 0.24 -57.13 16 20 Si 0.97 45.27 29.59 68.60 2.03 47.30 16 21 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 22 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 23 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 24 C 0.14 5.71 6.51 86.36 0.56 6.28 16 25 C -0.12 -3.73 5.55 30.67 0.17 -3.56 16 26 C -0.11 -1.61 1.07 -52.31 -0.06 -1.67 16 27 C -0.11 -1.40 6.86 30.88 0.21 -1.19 16 28 C -0.13 -1.60 8.08 31.23 0.25 -1.35 16 29 C -0.13 -1.87 7.84 30.89 0.24 -1.63 16 30 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.41 6.09 7.05 -92.71 -0.65 5.44 16 36 H 0.41 7.82 8.61 -92.71 -0.80 7.02 16 37 H 0.05 2.21 7.58 -2.39 -0.02 2.19 16 38 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 39 H 0.04 1.83 8.14 -2.39 -0.02 1.82 16 40 H -0.01 -0.68 8.14 -2.38 -0.02 -0.70 16 41 H 0.05 3.19 6.04 -2.39 -0.01 3.18 16 42 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 43 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 44 H 0.07 2.63 7.94 -2.39 -0.02 2.61 16 45 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 46 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 47 H 0.09 1.04 7.03 -2.39 -0.02 1.03 16 48 H 0.08 1.07 7.65 -2.39 -0.02 1.05 16 49 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 50 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 51 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 52 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 Total: -1.00 -73.31 405.67 0.04 -73.27 By element: Atomic # 1 Polarization: 24.49 SS G_CDS: -0.54 Total: 23.95 kcal Atomic # 6 Polarization: 11.17 SS G_CDS: 6.66 Total: 17.83 kcal Atomic # 7 Polarization: -122.80 SS G_CDS: -6.58 Total: -129.37 kcal Atomic # 8 Polarization: -31.44 SS G_CDS: -1.54 Total: -32.98 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -73.31 0.04 -73.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590925310.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.157 kcal (2) G-P(sol) polarization free energy of solvation -73.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds