Wall clock time and date at job start Tue Mar 31 2020 20:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46505 * 120.00151 * 2 1 4 4 C 1.34780 * 120.00242 * 180.02562 * 2 1 3 5 5 O 1.21284 * 119.99450 * 359.97438 * 4 2 1 6 6 C 1.50699 * 120.00159 * 179.97438 * 4 2 1 7 7 C 1.53001 * 109.46920 * 179.97438 * 6 4 2 8 8 C 1.52999 * 109.46714 * 180.02562 * 7 6 4 9 9 C 1.50704 * 109.46885 * 179.97438 * 8 7 6 10 10 O 1.21288 * 119.99926 * 359.97438 * 9 8 7 11 11 N 1.34769 * 120.00257 * 180.02562 * 9 8 7 12 12 C 1.46801 * 119.57450 * 359.97438 * 11 9 8 13 13 C 1.53464 * 107.59926 * 232.07264 * 12 11 9 14 14 C 1.52736 * 108.43877 * 301.92412 * 13 12 11 15 15 C 1.53010 * 110.80197 * 63.76793 * 14 13 12 16 16 H 1.09007 * 111.38387 * 68.76412 * 15 14 13 17 17 C 1.45116 * 119.57906 * 180.02562 * 11 9 8 18 18 H 1.09001 * 109.96995 * 11.91151 * 17 11 9 19 19 C 1.54421 * 111.60451 * 248.62955 * 17 11 9 20 20 C 1.54571 * 102.45196 * 203.41961 * 19 17 11 21 21 N 1.47123 * 107.24853 * 21.66715 * 20 19 17 22 22 C 1.36937 * 125.76598 * 182.63139 * 21 20 19 23 23 H 1.07992 * 120.00310 * 179.97438 * 22 21 20 24 24 C 1.38816 * 119.99872 * 359.96477 * 22 21 20 25 25 N 1.31620 * 120.00120 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 119.99829 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47302 * 60.00102 * 26 24 22 28 28 H 1.48501 * 109.46992 * 179.97438 * 26 24 22 29 29 H 1.48492 * 109.47027 * 299.99564 * 26 24 22 30 30 H 1.08996 * 109.46687 * 239.99610 * 1 2 3 31 31 H 1.09003 * 109.46929 * 359.97438 * 1 2 3 32 32 H 1.08997 * 109.47431 * 119.99327 * 1 2 3 33 33 H 1.09001 * 109.47241 * 270.01048 * 3 2 1 34 34 H 1.09002 * 109.46355 * 30.00653 * 3 2 1 35 35 H 1.08991 * 109.47063 * 150.00042 * 3 2 1 36 36 H 1.08998 * 109.46979 * 59.99383 * 6 4 2 37 37 H 1.08996 * 109.46945 * 299.99515 * 6 4 2 38 38 H 1.08997 * 109.46955 * 60.00062 * 7 6 4 39 39 H 1.09008 * 109.47017 * 300.00013 * 7 6 4 40 40 H 1.08997 * 109.47370 * 60.00303 * 8 7 6 41 41 H 1.08996 * 109.47037 * 299.99843 * 8 7 6 42 42 H 1.09003 * 109.83448 * 112.55055 * 12 11 9 43 43 H 1.09005 * 109.83635 * 351.59675 * 12 11 9 44 44 H 1.08999 * 109.64519 * 182.24192 * 13 12 11 45 45 H 1.08998 * 109.81712 * 61.71251 * 13 12 11 46 46 H 1.09004 * 109.21462 * 184.10969 * 14 13 12 47 47 H 1.09005 * 109.21118 * 303.42816 * 14 13 12 48 48 H 1.08997 * 110.81540 * 321.65994 * 19 17 11 49 49 H 1.09004 * 110.81071 * 85.18291 * 19 17 11 50 50 H 1.09003 * 109.88478 * 262.25766 * 20 19 17 51 51 H 1.09000 * 110.01654 * 141.15147 * 20 19 17 52 52 H 0.97002 * 120.00152 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5325 -2.2175 -0.0005 6 6 3.6459 -1.1672 -0.0011 7 6 4.1559 -2.6097 -0.0010 8 6 5.6859 -2.6096 -0.0009 9 6 6.1883 -4.0305 -0.0002 10 8 5.4001 -4.9523 0.0008 11 7 7.5132 -4.2768 0.0005 12 6 8.4589 -3.1540 0.0000 13 6 9.4460 -3.3792 -1.1533 14 6 10.1369 -4.7249 -0.9420 15 6 9.1264 -5.8717 -1.0135 16 1 8.7404 -5.9988 -2.0249 17 6 7.9868 -5.6485 0.0007 18 1 7.1609 -6.3275 -0.2113 19 6 8.6662 -6.0153 1.3380 20 6 9.5859 -7.1899 0.9335 21 7 9.8114 -7.0880 -0.5167 22 6 10.5318 -7.9688 -1.2786 23 1 10.6377 -7.8032 -2.3405 24 6 11.1260 -9.0745 -0.6858 25 7 10.9974 -9.2760 0.6085 26 14 12.1080 -10.2764 -1.7252 27 1 13.2399 -9.5634 -2.3699 28 1 12.6359 -11.3622 -0.8605 29 1 11.2296 -10.8589 -2.7712 30 1 -0.3632 -0.5139 0.8899 31 1 -0.3633 1.0277 0.0005 32 1 -0.3634 -0.5137 -0.8900 33 1 2.3791 1.5835 -1.0277 34 1 1.6084 2.0283 0.5140 35 1 3.1499 1.1384 0.5138 36 1 4.0096 -0.6534 0.8888 37 1 4.0089 -0.6532 -0.8911 38 1 3.7922 -3.1237 -0.8907 39 1 3.7929 -3.1233 0.8893 40 1 6.0492 -2.0958 0.8890 41 1 6.0492 -2.0959 -0.8909 42 1 8.9976 -3.1236 0.9471 43 1 7.9214 -2.2177 -0.1508 44 1 10.1898 -2.5825 -1.1599 45 1 8.9098 -3.3876 -2.1023 46 1 10.8934 -4.8649 -1.7142 47 1 10.6182 -4.7313 0.0360 48 1 9.2518 -5.1779 1.7175 49 1 7.9275 -6.3369 2.0723 50 1 9.1014 -8.1378 1.1677 51 1 10.5363 -7.1189 1.4624 52 1 11.4130 -10.0484 1.0227 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325918521.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:45 Heat of formation + Delta-G solvation = -44.121735 kcal Electronic energy + Delta-G solvation = -30013.942936 eV Core-core repulsion = 26014.097556 eV Total energy + Delta-G solvation = -3999.845380 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.41875 -40.04978 -38.04599 -35.92550 -35.22853 -34.44674 -32.35556 -32.20845 -29.91204 -28.92292 -28.31454 -27.78914 -26.21839 -24.55408 -24.24816 -22.50823 -21.89897 -20.13777 -19.72043 -19.51397 -18.05856 -17.23654 -17.05763 -16.85332 -16.61188 -16.21421 -15.64111 -15.39456 -14.73494 -14.50268 -14.24823 -13.98228 -13.85344 -13.52854 -13.40350 -13.28494 -13.13240 -13.09392 -12.85123 -12.57656 -12.41872 -12.19927 -12.08648 -11.92155 -11.82785 -11.56623 -11.29816 -10.99347 -10.96296 -10.90180 -10.75799 -10.61365 -10.44850 -10.11432 -10.08976 -10.03181 -9.61480 -9.57845 -9.40522 -9.09544 -8.59455 -8.21393 -6.83568 -5.68526 -3.02660 2.35667 2.61505 2.84914 3.23422 3.42656 3.46984 3.48091 4.16994 4.46435 4.51140 4.56083 4.74348 4.81058 4.84984 4.86164 4.94269 5.10520 5.13614 5.17449 5.21156 5.22887 5.28884 5.35530 5.38695 5.42583 5.44033 5.52528 5.62879 5.68615 5.75112 5.90767 5.98789 6.02645 6.02692 6.13244 6.24555 6.29833 6.33127 6.39456 6.54395 6.63223 6.77052 6.94523 7.03056 7.09831 7.57450 7.63217 7.69865 7.85227 7.87659 8.26185 8.45055 9.23023 9.82815 10.49039 11.42600 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.027605 B = 0.002071 C = 0.002010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.052298 B =13519.247940 C =13925.176548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.629 5.629 3 C 0.077 3.923 4 C 0.509 3.491 5 O -0.529 6.529 6 C -0.138 4.138 7 C -0.091 4.091 8 C -0.138 4.138 9 C 0.507 3.493 10 O -0.539 6.539 11 N -0.595 5.595 12 C 0.107 3.893 13 C -0.133 4.133 14 C -0.130 4.130 15 C 0.156 3.844 16 H 0.058 0.942 17 C 0.130 3.870 18 H 0.101 0.899 19 C -0.151 4.151 20 C 0.181 3.819 21 N -0.598 5.598 22 C -0.227 4.227 23 H 0.077 0.923 24 C -0.008 4.008 25 N -0.921 5.921 26 Si 0.912 3.088 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.285 1.285 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.068 0.932 43 H 0.080 0.920 44 H 0.067 0.933 45 H 0.063 0.937 46 H 0.059 0.941 47 H 0.062 0.938 48 H 0.058 0.942 49 H 0.060 0.940 50 H 0.051 0.949 51 H 0.041 0.959 52 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.906 26.536 0.249 29.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.365 5.365 3 C -0.066 4.066 4 C 0.298 3.702 5 O -0.405 6.405 6 C -0.178 4.178 7 C -0.129 4.129 8 C -0.178 4.178 9 C 0.294 3.706 10 O -0.416 6.416 11 N -0.327 5.327 12 C -0.016 4.016 13 C -0.172 4.172 14 C -0.170 4.170 15 C 0.047 3.953 16 H 0.076 0.924 17 C 0.026 3.974 18 H 0.119 0.881 19 C -0.190 4.190 20 C 0.056 3.944 21 N -0.322 5.322 22 C -0.355 4.355 23 H 0.095 0.905 24 C -0.204 4.204 25 N -0.569 5.569 26 Si 0.743 3.257 27 H -0.212 1.212 28 H -0.216 1.216 29 H -0.212 1.212 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.087 0.913 43 H 0.099 0.901 44 H 0.086 0.914 45 H 0.082 0.918 46 H 0.078 0.922 47 H 0.081 0.919 48 H 0.077 0.923 49 H 0.079 0.921 50 H 0.069 0.931 51 H 0.059 0.941 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -13.514 25.219 0.303 28.613 hybrid contribution 0.751 -0.394 -0.466 0.968 sum -12.763 24.825 -0.164 27.914 Atomic orbital electron populations 1.21605 0.79227 1.02055 1.02475 1.47853 1.07128 1.06565 1.74947 1.21860 0.97519 0.85183 1.02024 1.20836 0.90575 0.82975 0.75839 1.90752 1.70461 1.30903 1.48371 1.21733 0.91564 1.00313 1.04174 1.21103 0.92590 0.93899 1.05303 1.21700 0.97259 0.94910 1.03979 1.20638 0.82116 0.91425 0.76381 1.90722 1.54839 1.46468 1.49572 1.47660 1.05357 1.07193 1.72529 1.21828 0.91608 0.88677 0.99481 1.21927 0.98278 0.99022 0.97995 1.22117 0.99284 0.93271 1.02320 1.21322 0.90516 0.87887 0.95552 0.92390 1.21758 0.97568 0.81309 0.96811 0.88125 1.23102 0.99320 1.00292 0.96332 1.21173 0.95736 0.93437 0.84095 1.44680 1.59401 1.24060 1.04058 1.18984 1.23994 1.01420 0.91082 0.90518 1.24801 1.00955 0.98584 0.96061 1.69949 1.48437 1.29809 1.08669 0.86197 0.79813 0.80722 0.79002 1.21249 1.21641 1.21174 0.92139 0.90820 0.92129 0.92437 0.90997 0.90669 0.88804 0.88805 0.90337 0.90353 0.89049 0.88971 0.91330 0.90122 0.91422 0.91850 0.92211 0.91879 0.92341 0.92109 0.93099 0.94055 0.93701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.58 10.16 59.85 0.61 1.19 16 2 N -0.63 -4.62 3.27 -189.51 -0.62 -5.24 16 3 C 0.08 0.25 10.21 59.85 0.61 0.86 16 4 C 0.51 5.27 7.67 -10.98 -0.08 5.18 16 5 O -0.53 -8.05 15.98 5.55 0.09 -7.96 16 6 C -0.14 -1.01 4.25 -27.88 -0.12 -1.13 16 7 C -0.09 -1.00 3.79 -26.73 -0.10 -1.10 16 8 C -0.14 -1.34 4.01 -27.88 -0.11 -1.45 16 9 C 0.51 7.72 7.66 -10.99 -0.08 7.63 16 10 O -0.54 -10.73 15.31 5.55 0.08 -10.65 16 11 N -0.60 -9.00 2.73 -165.04 -0.45 -9.45 16 12 C 0.11 1.21 6.05 -3.64 -0.02 1.18 16 13 C -0.13 -1.65 6.11 -26.63 -0.16 -1.81 16 14 C -0.13 -2.24 5.10 -26.86 -0.14 -2.37 16 15 C 0.16 3.20 3.59 -66.39 -0.24 2.96 16 16 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 17 C 0.13 2.49 3.10 -67.31 -0.21 2.28 16 18 H 0.10 2.22 6.96 -51.93 -0.36 1.86 16 19 C -0.15 -2.96 6.08 -25.16 -0.15 -3.12 16 20 C 0.18 4.43 5.19 -2.88 -0.01 4.41 16 21 N -0.60 -15.10 2.91 -162.24 -0.47 -15.57 16 22 C -0.23 -6.28 10.29 -15.06 -0.15 -6.44 16 23 H 0.08 2.06 7.83 -52.49 -0.41 1.64 16 24 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 25 N -0.92 -27.21 10.33 55.49 0.57 -26.63 16 26 Si 0.91 22.30 29.55 -169.99 -5.02 17.27 16 27 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 28 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 29 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.26 7.79 -51.93 -0.40 -0.15 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.14 8.14 -51.93 -0.42 -0.28 16 34 H 0.07 0.13 7.92 -51.93 -0.41 -0.28 16 35 H 0.07 0.16 6.44 -51.93 -0.33 -0.18 16 36 H 0.09 0.46 7.40 -51.93 -0.38 0.08 16 37 H 0.09 0.48 8.11 -51.93 -0.42 0.06 16 38 H 0.08 1.06 8.06 -51.93 -0.42 0.64 16 39 H 0.08 1.05 8.06 -51.92 -0.42 0.63 16 40 H 0.09 0.66 7.93 -51.93 -0.41 0.25 16 41 H 0.09 0.68 7.61 -51.93 -0.40 0.28 16 42 H 0.07 0.76 7.53 -51.93 -0.39 0.37 16 43 H 0.08 0.62 5.82 -51.93 -0.30 0.32 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 47 H 0.06 1.16 7.12 -51.93 -0.37 0.79 16 48 H 0.06 1.04 6.81 -51.93 -0.35 0.69 16 49 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 50 H 0.05 1.40 7.30 -51.93 -0.38 1.03 16 51 H 0.04 1.10 7.59 -51.93 -0.39 0.71 16 52 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 399.89 15.07 6.03 6.03 Total: -1.00 -36.32 399.89 -9.34 -45.67 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -9.08 Total: -1.43 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: -0.47 Total: 7.97 kcal Atomic # 7 Polarization: -55.93 SS G_CDS: -0.97 Total: -56.90 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: 0.17 Total: -18.61 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.32 -9.34 -45.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325918521.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.544 kcal (2) G-P(sol) polarization free energy of solvation -36.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds