Wall clock time and date at job start Tue Mar 31 2020 21:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30301 * 126.34884 * 2 1 4 4 N 1.28528 * 110.05606 * 179.97438 * 3 2 1 5 5 C 1.31218 * 109.85924 * 359.97438 * 4 3 2 6 6 N 1.38586 * 126.47219 * 180.02562 * 5 4 3 7 7 C 1.46898 * 110.99901 * 246.31724 * 6 5 4 8 8 C 1.46901 * 110.99949 * 10.27082 * 6 5 4 9 9 H 1.08997 * 109.47464 * 300.00510 * 8 6 5 10 10 C 1.53007 * 109.46879 * 60.00123 * 8 6 5 11 11 C 1.50698 * 109.47316 * 179.97438 * 8 6 5 12 12 H 1.08005 * 119.99537 * 0.02562 * 11 8 6 13 13 C 1.37872 * 120.00315 * 179.97438 * 11 8 6 14 14 N 1.31509 * 120.00215 * 179.97438 * 13 11 8 15 15 Si 1.86799 * 119.99834 * 0.02562 * 13 11 8 16 16 H 1.48497 * 109.47544 * 89.99224 * 15 13 11 17 17 H 1.48501 * 109.46835 * 209.99654 * 15 13 11 18 18 H 1.48498 * 109.47077 * 329.99265 * 15 13 11 19 19 N 1.36457 * 107.05537 * 359.73975 * 5 4 3 20 20 C 1.46496 * 127.13897 * 180.26620 * 19 5 4 21 21 C 1.53003 * 109.47129 * 264.00756 * 20 19 5 22 22 H 1.08998 * 109.47136 * 57.41936 * 21 20 19 23 23 C 1.53000 * 109.46760 * 297.42272 * 21 20 19 24 24 N 1.46897 * 109.46960 * 177.42754 * 21 20 19 25 25 C 1.47013 * 110.99954 * 305.51015 * 24 21 20 26 26 C 1.53100 * 109.25674 * 177.61520 * 25 24 21 27 27 O 1.43013 * 109.26473 * 56.84582 * 26 25 24 28 28 C 1.43018 * 113.73654 * 301.33744 * 27 26 25 29 29 C 1.47016 * 110.99512 * 181.87913 * 24 21 20 30 30 H 1.08997 * 109.46894 * 90.03471 * 1 2 3 31 31 H 1.09001 * 109.46753 * 210.02389 * 1 2 3 32 32 H 1.08995 * 109.47370 * 330.02639 * 1 2 3 33 33 H 1.09000 * 109.46686 * 48.85617 * 7 6 5 34 34 H 1.09000 * 109.46991 * 168.85350 * 7 6 5 35 35 H 1.08997 * 109.47418 * 288.85243 * 7 6 5 36 36 H 1.08999 * 109.46773 * 179.97438 * 10 8 6 37 37 H 1.09001 * 109.47001 * 299.99930 * 10 8 6 38 38 H 1.08997 * 109.46756 * 59.99954 * 10 8 6 39 39 H 0.96998 * 120.00433 * 180.02562 * 14 13 11 40 40 H 1.09005 * 109.47245 * 24.00562 * 20 19 5 41 41 H 1.09001 * 109.47374 * 144.00390 * 20 19 5 42 42 H 1.08999 * 109.47250 * 300.00231 * 23 21 20 43 43 H 1.09003 * 109.46863 * 60.00042 * 23 21 20 44 44 H 1.08996 * 109.47016 * 179.97438 * 23 21 20 45 45 H 1.09003 * 109.50823 * 297.54699 * 25 24 21 46 46 H 1.08993 * 109.50498 * 57.67752 * 25 24 21 47 47 H 1.09003 * 109.50333 * 296.90754 * 26 25 24 48 48 H 1.09002 * 109.54227 * 176.80721 * 26 25 24 49 49 H 1.09000 * 109.50159 * 298.72618 * 28 27 26 50 50 H 1.08996 * 109.54056 * 178.62670 * 28 27 26 51 51 H 1.09002 * 109.50818 * 302.31888 * 29 24 21 52 52 H 1.08996 * 109.50863 * 62.41225 * 29 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2793 1.0495 0.0000 4 7 3.5130 0.6889 0.0005 5 6 3.5946 -0.6207 0.0015 6 7 4.7581 -1.3736 0.0028 7 6 4.9017 -2.1229 -1.2526 8 6 5.9330 -0.5265 0.2475 9 1 6.0061 0.2285 -0.5352 10 6 5.7918 0.1608 1.6073 11 6 7.1763 -1.3781 0.2424 12 1 7.1011 -2.4423 0.0737 13 6 8.4097 -0.7988 0.4520 14 7 9.4945 -1.5421 0.4480 15 14 8.5396 1.0418 0.7430 16 1 8.4376 1.3215 2.1978 17 1 9.8461 1.5322 0.2350 18 1 7.4386 1.7351 0.0273 19 7 2.3175 -1.1013 0.0074 20 6 1.9010 -2.5058 0.0160 21 6 1.6078 -2.9596 -1.4155 22 1 2.4930 -2.8080 -2.0332 23 6 0.4449 -2.1422 -1.9814 24 7 1.2498 -4.3843 -1.4138 25 6 2.2903 -5.1882 -0.7564 26 6 1.8505 -6.6543 -0.7240 27 8 1.5861 -7.0973 -2.0578 28 6 0.5771 -6.3365 -2.7277 29 6 1.0041 -4.8672 -2.7805 30 1 -0.3633 -0.0006 -1.0276 31 1 -0.3633 -0.8898 0.5142 32 1 -0.3634 0.8902 0.5134 33 1 4.7397 -1.4523 -2.0965 34 1 5.9050 -2.5449 -1.3111 35 1 4.1669 -2.9275 -1.2816 36 1 6.6638 0.7890 1.7891 37 1 4.8926 0.7767 1.6114 38 1 5.7188 -0.5942 2.3900 39 1 10.3623 -1.1346 0.5958 40 1 2.6989 -3.1189 0.4353 41 1 1.0022 -2.6146 0.6230 42 1 -0.4403 -2.2937 -1.3637 43 1 0.7105 -1.0850 -1.9825 44 1 0.2363 -2.4651 -3.0013 45 1 3.2237 -5.1005 -1.3125 46 1 2.4378 -4.8298 0.2623 47 1 0.9462 -6.7498 -0.1228 48 1 2.6429 -7.2632 -0.2886 49 1 -0.3641 -6.4228 -2.1848 50 1 0.4483 -6.7148 -3.7417 51 1 0.2126 -4.2745 -3.2392 52 1 1.9167 -4.7737 -3.3691 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434611708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:09 Heat of formation + Delta-G solvation = 55.715621 kcal Electronic energy + Delta-G solvation = -31938.857332 eV Core-core repulsion = 27975.633976 eV Total energy + Delta-G solvation = -3963.223356 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.222 amu Computer time = 4.22 seconds Orbital eigenvalues (eV) -44.06882 -40.79605 -39.12840 -38.21012 -35.71185 -34.93815 -33.01855 -32.34271 -32.11509 -31.89637 -29.32271 -27.88521 -27.48621 -27.01258 -26.20239 -24.68553 -23.75818 -22.83191 -21.58503 -21.34290 -20.71636 -19.11617 -18.41278 -17.83865 -17.30917 -17.06668 -16.92736 -16.72791 -16.38256 -16.01552 -15.73926 -15.71256 -15.39259 -15.14260 -15.02034 -14.70087 -14.53036 -14.36270 -13.92989 -13.90200 -13.59000 -13.49360 -13.34941 -13.04379 -12.91887 -12.80311 -12.69190 -12.51226 -12.44165 -12.30872 -12.22049 -12.17502 -11.99713 -11.60975 -11.52218 -11.45222 -11.17862 -11.04502 -10.81110 -10.65961 -10.48257 -9.54959 -9.18862 -8.36936 -6.40699 0.77737 1.23402 1.25725 1.32734 1.43582 1.83411 2.25773 2.52201 2.86039 2.96554 2.99696 3.44853 3.49067 3.55507 3.87762 3.90239 3.96727 3.99126 4.05852 4.14067 4.20670 4.26597 4.31995 4.35550 4.38803 4.46365 4.50523 4.55905 4.57563 4.62938 4.65049 4.69961 4.77984 4.80724 4.86290 4.87885 4.93487 4.96749 4.99543 5.00880 5.04829 5.09531 5.23994 5.25489 5.42764 5.67944 5.74441 5.81475 5.81786 6.13275 6.20159 6.48311 6.62275 7.23785 7.81169 8.77657 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012121 B = 0.003946 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2309.546177 B = 7093.251803 C = 8923.317934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.184 3.816 3 N -0.334 5.334 4 N -0.364 5.364 5 C 0.359 3.641 6 N -0.448 5.448 7 C 0.042 3.958 8 C 0.211 3.789 9 H -0.002 1.002 10 C -0.141 4.141 11 C -0.513 4.513 12 H 0.062 0.938 13 C 0.034 3.966 14 N -0.932 5.932 15 Si 0.931 3.069 16 H -0.266 1.266 17 H -0.291 1.291 18 H -0.264 1.264 19 N -0.470 5.470 20 C 0.111 3.889 21 C 0.069 3.931 22 H 0.028 0.972 23 C -0.150 4.150 24 N -0.515 5.515 25 C 0.005 3.995 26 C 0.067 3.933 27 O -0.409 6.409 28 C 0.064 3.936 29 C 0.015 3.985 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.098 0.902 33 H 0.020 0.980 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.038 0.962 37 H 0.055 0.945 38 H 0.052 0.948 39 H 0.270 0.730 40 H 0.093 0.907 41 H 0.132 0.868 42 H 0.094 0.906 43 H 0.055 0.945 44 H 0.070 0.930 45 H 0.028 0.972 46 H 0.097 0.903 47 H 0.073 0.927 48 H 0.105 0.895 49 H 0.072 0.928 50 H 0.111 0.889 51 H 0.110 0.890 52 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.031 -8.540 -4.526 27.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.084 4.084 3 N -0.173 5.173 4 N -0.207 5.207 5 C 0.002 3.998 6 N -0.172 5.172 7 C -0.105 4.105 8 C 0.104 3.896 9 H 0.016 0.984 10 C -0.198 4.198 11 C -0.551 4.551 12 H 0.080 0.920 13 C -0.165 4.165 14 N -0.571 5.571 15 Si 0.759 3.241 16 H -0.192 1.192 17 H -0.218 1.218 18 H -0.189 1.189 19 N -0.165 5.165 20 C -0.011 4.011 21 C -0.041 4.041 22 H 0.046 0.954 23 C -0.207 4.207 24 N -0.241 5.241 25 C -0.123 4.123 26 C -0.009 4.009 27 O -0.328 6.328 28 C -0.013 4.013 29 C -0.113 4.113 30 H 0.125 0.875 31 H 0.123 0.877 32 H 0.117 0.883 33 H 0.039 0.961 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.056 0.944 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.111 0.889 41 H 0.149 0.851 42 H 0.113 0.887 43 H 0.074 0.926 44 H 0.088 0.912 45 H 0.047 0.953 46 H 0.115 0.885 47 H 0.092 0.908 48 H 0.123 0.877 49 H 0.090 0.910 50 H 0.129 0.871 51 H 0.128 0.872 52 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -25.761 -7.671 -3.946 27.167 hybrid contribution 1.637 0.386 -0.681 1.815 sum -24.124 -7.284 -4.627 25.621 Atomic orbital electron populations 1.20667 0.79953 1.05920 1.05562 1.25604 0.98106 0.81319 1.03410 1.73874 0.96503 1.26160 1.20743 1.74611 1.12821 1.08682 1.24624 1.22886 0.85804 0.89357 1.01783 1.58709 0.98911 1.25590 1.33967 1.22486 1.04425 0.96853 0.86740 1.19368 0.86034 0.90485 0.93746 0.98388 1.22089 0.99920 0.99445 0.98367 1.21015 0.89425 0.95373 1.49270 0.91978 1.25429 0.95316 1.01388 0.94395 1.69949 0.98892 1.37381 1.50909 0.86118 0.76839 0.82022 0.79128 1.19226 1.21790 1.18906 1.46238 1.04309 1.09211 1.56790 1.22163 1.03685 0.76525 0.98716 1.21969 0.98390 0.89155 0.94546 0.95444 1.22164 0.97744 0.98484 1.02281 1.62322 1.42495 1.00783 1.18460 1.22985 0.92970 0.95582 1.00791 1.22722 1.01930 0.92528 0.83766 1.87983 1.59349 1.57167 1.28265 1.22808 0.90934 0.88732 0.98817 1.22933 1.01506 0.97990 0.88851 0.87548 0.87687 0.88349 0.96143 0.89592 0.90020 0.94357 0.92584 0.92893 0.92115 0.88869 0.85054 0.88675 0.92648 0.91151 0.95339 0.88535 0.90837 0.87734 0.90989 0.87054 0.87243 0.95436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.87 8.58 71.24 0.61 -0.26 16 2 C 0.18 5.01 6.75 137.64 0.93 5.94 16 3 N -0.33 -12.59 12.18 -49.53 -0.60 -13.20 16 4 N -0.36 -15.92 9.44 -58.00 -0.55 -16.47 16 5 C 0.36 14.04 6.33 260.11 1.65 15.69 16 6 N -0.45 -18.94 4.62 -710.99 -3.28 -22.23 16 7 C 0.04 1.58 9.02 127.69 1.15 2.73 16 8 C 0.21 10.52 1.31 44.17 0.06 10.58 16 9 H 0.00 -0.08 7.06 -2.39 -0.02 -0.10 16 10 C -0.14 -6.80 8.48 71.98 0.61 -6.19 16 11 C -0.51 -28.70 8.30 25.60 0.21 -28.48 16 12 H 0.06 3.69 6.76 -2.91 -0.02 3.68 16 13 C 0.03 1.99 5.45 84.65 0.46 2.45 16 14 N -0.93 -56.69 13.96 21.44 0.30 -56.39 16 15 Si 0.93 46.66 24.37 68.60 1.67 48.33 16 16 H -0.27 -12.82 6.87 99.48 0.68 -12.14 16 17 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 18 H -0.26 -13.32 6.53 99.48 0.65 -12.67 16 19 N -0.47 -13.35 2.68 -514.83 -1.38 -14.73 16 20 C 0.11 2.22 4.36 86.38 0.38 2.60 16 21 C 0.07 1.20 2.05 44.92 0.09 1.30 16 22 H 0.03 0.65 6.15 -2.39 -0.01 0.63 16 23 C -0.15 -1.95 7.32 71.98 0.53 -1.42 16 24 N -0.51 -7.82 4.59 -869.98 -4.00 -11.82 16 25 C 0.00 0.08 5.20 86.31 0.45 0.53 16 26 C 0.07 1.05 7.01 72.02 0.50 1.55 16 27 O -0.41 -7.68 10.83 -148.98 -1.61 -9.30 16 28 C 0.06 0.82 7.01 72.01 0.50 1.32 16 29 C 0.02 0.21 5.37 86.31 0.46 0.67 16 30 H 0.11 1.10 6.32 -2.39 -0.02 1.08 16 31 H 0.10 0.87 7.29 -2.39 -0.02 0.85 16 32 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.02 0.77 8.04 -2.39 -0.02 0.75 16 34 H 0.09 3.64 5.84 -2.39 -0.01 3.62 16 35 H 0.08 2.52 4.95 -2.39 -0.01 2.51 16 36 H 0.04 1.88 3.27 -2.39 -0.01 1.87 16 37 H 0.06 2.66 5.82 -2.39 -0.01 2.64 16 38 H 0.05 2.49 8.14 -2.39 -0.02 2.47 16 39 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 40 H 0.09 2.13 5.80 -2.38 -0.01 2.11 16 41 H 0.13 1.82 7.45 -2.39 -0.02 1.81 16 42 H 0.09 0.80 7.69 -2.39 -0.02 0.79 16 43 H 0.05 0.91 4.81 -2.39 -0.01 0.90 16 44 H 0.07 0.80 6.39 -2.39 -0.02 0.79 16 45 H 0.03 0.62 8.03 -2.39 -0.02 0.61 16 46 H 0.10 1.59 6.03 -2.39 -0.01 1.57 16 47 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 48 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 49 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 50 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 51 H 0.11 1.09 6.24 -2.39 -0.01 1.07 16 52 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 Total: -1.00 -74.87 374.94 0.00 -74.86 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: 0.86 Total: 11.92 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: 8.60 Total: 9.02 kcal Atomic # 7 Polarization: -125.33 SS G_CDS: -9.51 Total: -134.84 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: -1.61 Total: -9.30 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 1.67 Total: 48.33 kcal Total: -74.87 0.00 -74.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434611708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.576 kcal (2) G-P(sol) polarization free energy of solvation -74.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.22 seconds