Wall clock time and date at job start Tue Mar 31 2020 20:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46901 * 110.99820 * 2 1 4 4 C 1.52996 * 109.47027 * 66.04797 * 3 2 1 5 5 N 1.46498 * 109.47167 * 179.97438 * 4 3 2 6 6 C 1.34776 * 120.00303 * 180.02562 * 5 4 3 7 7 O 1.21286 * 119.99774 * 0.02562 * 6 5 4 8 8 C 1.50695 * 120.00281 * 179.97438 * 6 5 4 9 9 H 1.09004 * 109.48108 * 59.99336 * 8 6 5 10 10 C 1.52946 * 109.47825 * 299.97706 * 8 6 5 11 11 C 1.52944 * 109.82210 * 177.01562 * 10 8 6 12 12 C 1.53180 * 109.44624 * 62.99069 * 11 10 8 13 13 C 1.53151 * 108.88111 * 303.42339 * 12 11 10 14 14 C 1.52810 * 117.75062 * 199.63402 * 13 12 11 15 15 C 1.52843 * 117.67861 * 268.52066 * 13 12 11 16 16 C 1.53151 * 115.00397 * 53.95194 * 13 12 11 17 17 C 1.46907 * 111.00164 * 236.05212 * 2 1 3 18 18 C 1.50707 * 109.46595 * 293.95343 * 17 2 1 19 19 O 1.21292 * 120.00141 * 359.97438 * 18 17 2 20 20 N 1.34775 * 119.99882 * 180.02562 * 18 17 2 21 21 C 1.37096 * 119.99987 * 179.97438 * 20 18 17 22 22 H 1.08003 * 119.99824 * 0.02562 * 21 20 18 23 23 C 1.38950 * 120.00102 * 179.97438 * 21 20 18 24 24 N 1.31421 * 119.99772 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00211 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46879 * 90.00210 * 25 23 21 27 27 H 1.48503 * 109.47071 * 210.00437 * 25 23 21 28 28 H 1.48504 * 109.46818 * 330.00469 * 25 23 21 29 29 H 1.09003 * 109.47346 * 59.99841 * 1 2 3 30 30 H 1.08997 * 109.46814 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47351 * 299.99860 * 1 2 3 32 32 H 1.09000 * 109.47733 * 306.04391 * 3 2 1 33 33 H 1.09001 * 109.46861 * 186.04886 * 3 2 1 34 34 H 1.08997 * 109.47266 * 60.00025 * 4 3 2 35 35 H 1.09001 * 109.47373 * 299.99775 * 4 3 2 36 36 H 0.96999 * 119.99976 * 359.97438 * 5 4 3 37 37 H 1.08998 * 109.40996 * 297.12527 * 10 8 6 38 38 H 1.09004 * 109.41014 * 56.90577 * 10 8 6 39 39 H 1.09002 * 109.47711 * 302.99519 * 11 10 8 40 40 H 1.09004 * 109.47790 * 182.98244 * 11 10 8 41 41 H 1.09006 * 109.56891 * 183.60605 * 12 11 10 42 42 H 1.08996 * 109.67318 * 63.30975 * 12 11 10 43 43 H 1.09000 * 117.50207 * 215.10583 * 14 13 12 44 44 H 1.08997 * 117.50567 * 0.15462 * 14 13 12 45 45 H 1.09000 * 117.50170 * 359.71735 * 15 13 12 46 46 H 1.08995 * 117.50681 * 144.74671 * 15 13 12 47 47 H 1.08999 * 109.56671 * 186.23837 * 16 13 12 48 48 H 1.08999 * 109.67394 * 65.92802 * 16 13 12 49 49 H 1.09001 * 109.47327 * 53.94604 * 17 2 1 50 50 H 1.08995 * 109.47467 * 173.95718 * 17 2 1 51 51 H 0.97002 * 119.99816 * 0.02562 * 20 18 17 52 52 H 0.96996 * 119.99397 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0574 1.3183 5 7 2.1569 3.4249 1.3185 6 6 1.9565 4.2236 2.3855 7 8 1.3416 3.8101 3.3456 8 6 2.4976 5.6301 2.3860 9 1 2.0638 6.1868 1.5552 10 6 4.0190 5.5913 2.2347 11 6 4.5693 7.0164 2.1597 12 6 4.2719 7.7476 3.4725 13 6 2.7623 7.7132 3.7280 14 6 2.1815 8.7398 4.6996 15 6 1.9256 8.8769 3.1970 16 6 2.1337 6.3169 3.7060 17 6 1.9955 -0.7659 -1.1377 18 6 1.6369 -2.2204 -0.9730 19 8 1.0054 -2.5833 -0.0031 20 7 2.0189 -3.1181 -1.9029 21 6 1.6932 -4.4413 -1.7528 22 1 1.1301 -4.7642 -0.8896 23 6 2.0865 -5.3667 -2.7118 24 7 2.7712 -4.9735 -3.7624 25 14 1.6421 -7.1695 -2.5077 26 1 0.3298 -7.4317 -3.1515 27 1 2.6845 -8.0118 -3.1474 28 1 1.5586 -7.4981 -1.0619 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.5611 1.9274 -0.8309 33 1 3.0797 1.3444 -0.1083 34 1 2.0658 1.5015 2.1491 35 1 0.5471 2.0844 1.4265 36 1 2.6497 3.7553 0.5511 37 1 4.4554 5.0791 3.0922 38 1 4.2788 5.0542 1.3225 39 1 4.0952 7.5460 1.3333 40 1 5.6468 6.9820 1.9989 41 1 4.6061 8.7825 3.3977 42 1 4.7925 7.2544 4.2933 43 1 1.3468 8.4243 5.3255 44 1 2.8734 9.4458 5.1588 45 1 2.4494 9.6731 2.6679 46 1 0.9229 8.6516 2.8340 47 1 1.0500 6.4031 3.7860 48 1 2.5159 5.7292 4.5407 49 1 1.5611 -0.3872 -2.0629 50 1 3.0797 -0.6611 -1.1757 51 1 2.5249 -2.8280 -2.6780 52 1 3.0460 -5.6197 -4.4316 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663185150.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:05 Heat of formation + Delta-G solvation = -60.976688 kcal Electronic energy + Delta-G solvation = -28648.188065 eV Core-core repulsion = 24647.611799 eV Total energy + Delta-G solvation = -4000.576266 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.61364 -39.05896 -38.58621 -36.79722 -35.21744 -34.62254 -33.79838 -31.62726 -31.25116 -29.51995 -27.91268 -27.62496 -25.48891 -24.42275 -23.24386 -22.93153 -22.02105 -21.23601 -20.20226 -19.17293 -19.05717 -17.85655 -17.22889 -16.45661 -16.00995 -15.96386 -15.59449 -15.42130 -15.12190 -14.70013 -14.57214 -14.46845 -14.26104 -13.82838 -13.74225 -13.45456 -13.32306 -13.21323 -13.04409 -12.79675 -12.30978 -12.13309 -11.91902 -11.84173 -11.58496 -11.53989 -11.51336 -11.40327 -11.33803 -11.27699 -11.05038 -10.94707 -10.90869 -10.38850 -10.33723 -10.21974 -10.01084 -9.80603 -9.48062 -9.18044 -8.48337 -7.99171 -7.89358 -6.42052 -3.82727 2.48097 2.89001 3.17876 3.26677 3.32878 3.36750 3.89727 4.01836 4.16539 4.20998 4.28373 4.38138 4.46473 4.61589 4.68421 4.76851 4.78761 4.87627 4.96002 5.00028 5.11968 5.12677 5.16306 5.24550 5.27377 5.39044 5.41531 5.51810 5.52776 5.56597 5.63005 5.67748 5.68662 5.73593 5.76277 5.78827 5.84934 5.89921 5.92617 5.97111 5.98785 6.01341 6.25236 6.28743 6.55423 7.18752 7.29924 7.33911 7.55268 8.06187 8.06631 8.61581 9.18085 9.53996 10.05954 10.75699 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.035027 B = 0.001551 C = 0.001517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.202263 B =18047.139185 C =18448.853006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.515 5.515 3 C 0.045 3.955 4 C 0.121 3.879 5 N -0.729 5.729 6 C 0.515 3.485 7 O -0.538 6.538 8 C -0.102 4.102 9 H 0.097 0.903 10 C -0.111 4.111 11 C -0.114 4.114 12 C -0.083 4.083 13 C -0.123 4.123 14 C -0.174 4.174 15 C -0.176 4.176 16 C -0.060 4.060 17 C 0.047 3.953 18 C 0.443 3.557 19 O -0.576 6.576 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.269 1.269 29 H 0.015 0.985 30 H 0.098 0.902 31 H 0.063 0.937 32 H 0.036 0.964 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.398 0.602 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.068 0.932 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.092 0.908 46 H 0.093 0.907 47 H 0.070 0.930 48 H 0.076 0.924 49 H 0.048 0.952 50 H 0.089 0.911 51 H 0.392 0.608 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.867 29.187 7.681 30.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.239 5.239 3 C -0.084 4.084 4 C -0.003 4.003 5 N -0.381 5.381 6 C 0.301 3.699 7 O -0.414 6.414 8 C -0.123 4.123 9 H 0.115 0.885 10 C -0.148 4.148 11 C -0.152 4.152 12 C -0.120 4.120 13 C -0.123 4.123 14 C -0.211 4.211 15 C -0.212 4.212 16 C -0.097 4.097 17 C -0.084 4.084 18 C 0.229 3.771 19 O -0.460 6.460 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.034 0.966 30 H 0.116 0.884 31 H 0.081 0.919 32 H 0.054 0.946 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.232 0.768 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.113 0.887 44 H 0.111 0.889 45 H 0.111 0.889 46 H 0.111 0.889 47 H 0.088 0.912 48 H 0.095 0.905 49 H 0.066 0.934 50 H 0.107 0.893 51 H 0.225 0.775 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.215 28.257 9.303 29.922 hybrid contribution 0.094 -0.163 -1.735 1.746 sum 3.309 28.094 7.567 29.283 Atomic orbital electron populations 1.22626 0.86484 1.04745 0.99103 1.61448 1.08948 1.10457 1.43067 1.22252 1.00707 0.89769 0.95685 1.21337 0.99572 0.80792 0.98578 1.45978 1.57978 1.14408 1.19755 1.20650 0.79604 0.87366 0.82259 1.90724 1.40826 1.75697 1.34147 1.21318 0.97282 0.92786 1.00922 0.88527 1.21501 0.92898 0.97744 1.02701 1.21501 1.00754 0.95125 0.97792 1.21165 0.92628 1.00446 0.97776 1.21504 0.94751 0.91324 1.04756 1.22984 1.03367 1.02099 0.92685 1.23040 1.01120 1.00387 0.96699 1.20921 1.00339 0.92400 0.96079 1.21870 1.00663 0.94244 0.91637 1.19709 0.85534 0.86602 0.85281 1.90495 1.43864 1.80089 1.31552 1.41859 1.49409 1.07358 1.21469 1.19708 1.32907 0.82270 1.07941 0.87883 1.25257 0.96799 1.00574 0.95300 1.69615 1.38073 1.35770 1.10920 0.85856 0.77996 0.81726 0.78707 1.20444 1.20938 1.19392 0.96647 0.88370 0.91854 0.94618 0.90315 0.90291 0.91228 0.76770 0.91153 0.91383 0.91612 0.91417 0.91786 0.91335 0.88746 0.88858 0.88935 0.88876 0.91175 0.90531 0.93366 0.89328 0.77511 0.91902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 8.96 60.06 0.54 0.83 16 2 N -0.51 -8.42 4.50 -244.37 -1.10 -9.52 16 3 C 0.04 0.53 5.07 -3.83 -0.02 0.51 16 4 C 0.12 1.45 5.60 -4.04 -0.02 1.43 16 5 N -0.73 -6.85 5.43 -60.30 -0.33 -7.18 16 6 C 0.52 5.61 7.15 -10.99 -0.08 5.53 16 7 O -0.54 -8.23 15.96 5.55 0.09 -8.14 16 8 C -0.10 -0.76 2.53 -91.71 -0.23 -1.00 16 9 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 10 C -0.11 -0.67 5.03 -26.79 -0.13 -0.80 16 11 C -0.11 -0.57 5.93 -26.67 -0.16 -0.73 16 12 C -0.08 -0.46 5.67 -26.56 -0.15 -0.61 16 13 C -0.12 -0.80 1.97 -154.53 -0.30 -1.11 16 14 C -0.17 -1.07 9.99 -26.81 -0.27 -1.34 16 15 C -0.18 -1.03 9.93 -26.79 -0.27 -1.30 16 16 C -0.06 -0.49 4.27 -26.56 -0.11 -0.61 16 17 C 0.05 0.82 5.45 -4.97 -0.03 0.80 16 18 C 0.44 10.37 7.47 -10.98 -0.08 10.29 16 19 O -0.58 -15.47 13.91 5.55 0.08 -15.39 16 20 N -0.56 -14.17 5.29 -10.96 -0.06 -14.23 16 21 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 22 H 0.10 3.00 7.16 -52.48 -0.38 2.63 16 23 C 0.02 0.59 5.50 -17.46 -0.10 0.50 16 24 N -0.90 -24.39 13.05 55.50 0.72 -23.66 16 25 Si 0.93 21.02 29.55 -169.99 -5.02 15.99 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 27 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 28 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 29 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.10 1.95 5.82 -51.93 -0.30 1.65 16 31 H 0.06 0.94 6.47 -51.93 -0.34 0.60 16 32 H 0.04 0.38 8.12 -51.93 -0.42 -0.04 16 33 H 0.08 0.83 7.93 -51.93 -0.41 0.42 16 34 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.07 0.92 6.55 -51.93 -0.34 0.58 16 36 H 0.40 2.55 7.85 -40.82 -0.32 2.23 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.34 7.47 -51.93 -0.39 -0.05 16 39 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 41 H 0.06 0.31 8.09 -51.93 -0.42 -0.11 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 47 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 48 H 0.08 0.75 8.01 -51.93 -0.42 0.33 16 49 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 50 H 0.09 1.37 7.93 -51.93 -0.41 0.96 16 51 H 0.39 9.37 7.90 -40.82 -0.32 9.05 16 52 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 412.62 15.07 6.22 6.22 Total: -1.00 -32.96 412.62 -10.05 -43.02 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: -9.09 Total: 8.95 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: -1.56 Total: 3.96 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: -0.76 Total: -54.59 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: 0.17 Total: -23.54 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -32.96 -10.05 -43.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663185150.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.961 kcal (2) G-P(sol) polarization free energy of solvation -32.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds