Wall clock time and date at job start Tue Mar 31 2020 20:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46901 * 110.99820 * 2 1 4 4 C 1.52996 * 109.47027 * 66.04797 * 3 2 1 5 5 N 1.46498 * 109.47167 * 179.97438 * 4 3 2 6 6 C 1.34776 * 120.00303 * 180.02562 * 5 4 3 7 7 O 1.21286 * 119.99774 * 0.02562 * 6 5 4 8 8 C 1.50695 * 120.00281 * 179.97438 * 6 5 4 9 9 H 1.09004 * 109.48108 * 59.99336 * 8 6 5 10 10 C 1.52946 * 109.47825 * 299.97706 * 8 6 5 11 11 C 1.52944 * 109.82210 * 177.01562 * 10 8 6 12 12 C 1.53180 * 109.44624 * 62.99069 * 11 10 8 13 13 C 1.53151 * 108.88111 * 303.42339 * 12 11 10 14 14 C 1.52810 * 117.75062 * 199.63402 * 13 12 11 15 15 C 1.52843 * 117.67861 * 268.52066 * 13 12 11 16 16 C 1.53151 * 115.00397 * 53.95194 * 13 12 11 17 17 C 1.46907 * 111.00164 * 236.05212 * 2 1 3 18 18 C 1.50707 * 109.46595 * 293.95343 * 17 2 1 19 19 O 1.21292 * 120.00141 * 359.97438 * 18 17 2 20 20 N 1.34775 * 119.99882 * 180.02562 * 18 17 2 21 21 C 1.37096 * 119.99987 * 179.97438 * 20 18 17 22 22 H 1.08003 * 119.99824 * 0.02562 * 21 20 18 23 23 C 1.38950 * 120.00102 * 179.97438 * 21 20 18 24 24 N 1.31421 * 119.99772 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00211 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46879 * 90.00210 * 25 23 21 27 27 H 1.48503 * 109.47071 * 210.00437 * 25 23 21 28 28 H 1.48504 * 109.46818 * 330.00469 * 25 23 21 29 29 H 1.09003 * 109.47346 * 59.99841 * 1 2 3 30 30 H 1.08997 * 109.46814 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47351 * 299.99860 * 1 2 3 32 32 H 1.09000 * 109.47733 * 306.04391 * 3 2 1 33 33 H 1.09001 * 109.46861 * 186.04886 * 3 2 1 34 34 H 1.08997 * 109.47266 * 60.00025 * 4 3 2 35 35 H 1.09001 * 109.47373 * 299.99775 * 4 3 2 36 36 H 0.96999 * 119.99976 * 359.97438 * 5 4 3 37 37 H 1.08998 * 109.40996 * 297.12527 * 10 8 6 38 38 H 1.09004 * 109.41014 * 56.90577 * 10 8 6 39 39 H 1.09002 * 109.47711 * 302.99519 * 11 10 8 40 40 H 1.09004 * 109.47790 * 182.98244 * 11 10 8 41 41 H 1.09006 * 109.56891 * 183.60605 * 12 11 10 42 42 H 1.08996 * 109.67318 * 63.30975 * 12 11 10 43 43 H 1.09000 * 117.50207 * 215.10583 * 14 13 12 44 44 H 1.08997 * 117.50567 * 0.15462 * 14 13 12 45 45 H 1.09000 * 117.50170 * 359.71735 * 15 13 12 46 46 H 1.08995 * 117.50681 * 144.74671 * 15 13 12 47 47 H 1.08999 * 109.56671 * 186.23837 * 16 13 12 48 48 H 1.08999 * 109.67394 * 65.92802 * 16 13 12 49 49 H 1.09001 * 109.47327 * 53.94604 * 17 2 1 50 50 H 1.08995 * 109.47467 * 173.95718 * 17 2 1 51 51 H 0.97002 * 119.99816 * 0.02562 * 20 18 17 52 52 H 0.96996 * 119.99397 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0574 1.3183 5 7 2.1569 3.4249 1.3185 6 6 1.9565 4.2236 2.3855 7 8 1.3416 3.8101 3.3456 8 6 2.4976 5.6301 2.3860 9 1 2.0638 6.1868 1.5552 10 6 4.0190 5.5913 2.2347 11 6 4.5693 7.0164 2.1597 12 6 4.2719 7.7476 3.4725 13 6 2.7623 7.7132 3.7280 14 6 2.1815 8.7398 4.6996 15 6 1.9256 8.8769 3.1970 16 6 2.1337 6.3169 3.7060 17 6 1.9955 -0.7659 -1.1377 18 6 1.6369 -2.2204 -0.9730 19 8 1.0054 -2.5833 -0.0031 20 7 2.0189 -3.1181 -1.9029 21 6 1.6932 -4.4413 -1.7528 22 1 1.1301 -4.7642 -0.8896 23 6 2.0865 -5.3667 -2.7118 24 7 2.7712 -4.9735 -3.7624 25 14 1.6421 -7.1695 -2.5077 26 1 0.3298 -7.4317 -3.1515 27 1 2.6845 -8.0118 -3.1474 28 1 1.5586 -7.4981 -1.0619 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.5611 1.9274 -0.8309 33 1 3.0797 1.3444 -0.1083 34 1 2.0658 1.5015 2.1491 35 1 0.5471 2.0844 1.4265 36 1 2.6497 3.7553 0.5511 37 1 4.4554 5.0791 3.0922 38 1 4.2788 5.0542 1.3225 39 1 4.0952 7.5460 1.3333 40 1 5.6468 6.9820 1.9989 41 1 4.6061 8.7825 3.3977 42 1 4.7925 7.2544 4.2933 43 1 1.3468 8.4243 5.3255 44 1 2.8734 9.4458 5.1588 45 1 2.4494 9.6731 2.6679 46 1 0.9229 8.6516 2.8340 47 1 1.0500 6.4031 3.7860 48 1 2.5159 5.7292 4.5407 49 1 1.5611 -0.3872 -2.0629 50 1 3.0797 -0.6611 -1.1757 51 1 2.5249 -2.8280 -2.6780 52 1 3.0460 -5.6197 -4.4316 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663185150.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:04 Heat of formation + Delta-G solvation = -84.018784 kcal Electronic energy + Delta-G solvation = -28649.187245 eV Core-core repulsion = 24647.611799 eV Total energy + Delta-G solvation = -4001.575446 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.36498 -40.39114 -39.63217 -38.16403 -36.02717 -35.79648 -35.40081 -33.26854 -32.21439 -30.61549 -29.12319 -28.35034 -27.03917 -25.72441 -24.22725 -23.38838 -22.52914 -22.32868 -21.12548 -20.89087 -19.84777 -19.58134 -18.10836 -17.62785 -17.38025 -16.91604 -16.56090 -16.36477 -16.28137 -16.04786 -15.77289 -15.48200 -15.25044 -15.11005 -14.93195 -14.61604 -14.32573 -14.12458 -13.81739 -13.77784 -13.46953 -13.44431 -13.04167 -12.96115 -12.78048 -12.57913 -12.55224 -12.39734 -12.37354 -12.16065 -12.11574 -12.08232 -12.04768 -11.80578 -11.48896 -11.45221 -10.82542 -10.73428 -10.42590 -10.28289 -10.10866 -9.98394 -9.24048 -8.45566 -5.93730 1.38300 1.42236 1.54653 1.61893 2.00862 2.07479 2.31134 2.84799 2.93529 3.21562 3.42620 3.59614 3.66819 3.82325 3.87739 3.94733 4.06218 4.10525 4.20456 4.23820 4.25862 4.34286 4.37046 4.46290 4.48720 4.53454 4.54955 4.63475 4.64241 4.69345 4.82363 4.86673 4.91789 4.95240 5.06376 5.08529 5.12154 5.17200 5.20273 5.22354 5.29825 5.30859 5.37435 5.42510 5.47231 5.52393 5.85566 6.05078 6.16990 6.54641 6.62774 7.14980 7.25507 7.58586 8.15192 8.71740 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.035027 B = 0.001551 C = 0.001517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.202263 B =18047.139185 C =18448.853006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.540 5.540 3 C 0.053 3.947 4 C 0.129 3.871 5 N -0.712 5.712 6 C 0.511 3.489 7 O -0.589 6.589 8 C -0.091 4.091 9 H 0.119 0.881 10 C -0.108 4.108 11 C -0.110 4.110 12 C -0.083 4.083 13 C -0.127 4.127 14 C -0.182 4.182 15 C -0.167 4.167 16 C -0.058 4.058 17 C 0.061 3.939 18 C 0.439 3.561 19 O -0.617 6.617 20 N -0.574 5.574 21 C -0.333 4.333 22 H 0.077 0.923 23 C -0.011 4.011 24 N -0.919 5.919 25 Si 0.991 3.009 26 H -0.271 1.271 27 H -0.270 1.270 28 H -0.275 1.275 29 H 0.036 0.964 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.099 0.901 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.417 0.583 37 H 0.055 0.945 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.060 0.940 43 H 0.085 0.915 44 H 0.103 0.897 45 H 0.107 0.893 46 H 0.090 0.910 47 H 0.053 0.947 48 H 0.052 0.948 49 H 0.073 0.927 50 H 0.115 0.885 51 H 0.397 0.603 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.308 31.234 5.806 32.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.265 5.265 3 C -0.074 4.074 4 C 0.004 3.996 5 N -0.365 5.365 6 C 0.299 3.701 7 O -0.469 6.469 8 C -0.112 4.112 9 H 0.137 0.863 10 C -0.146 4.146 11 C -0.147 4.147 12 C -0.120 4.120 13 C -0.127 4.127 14 C -0.219 4.219 15 C -0.204 4.204 16 C -0.096 4.096 17 C -0.070 4.070 18 C 0.226 3.774 19 O -0.503 6.503 20 N -0.211 5.211 21 C -0.463 4.463 22 H 0.095 0.905 23 C -0.211 4.211 24 N -0.560 5.560 25 Si 0.815 3.185 26 H -0.197 1.197 27 H -0.195 1.195 28 H -0.200 1.200 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.118 0.882 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.255 0.745 37 H 0.074 0.926 38 H 0.104 0.896 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.094 0.906 42 H 0.079 0.921 43 H 0.104 0.896 44 H 0.121 0.879 45 H 0.125 0.875 46 H 0.109 0.891 47 H 0.072 0.928 48 H 0.071 0.929 49 H 0.091 0.909 50 H 0.133 0.867 51 H 0.231 0.769 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.691 30.344 7.378 31.579 hybrid contribution -0.389 -0.752 -1.078 1.371 sum 4.303 29.592 6.300 30.560 Atomic orbital electron populations 1.22457 0.86962 1.02363 1.00537 1.61331 1.08855 1.13249 1.43076 1.22248 1.01883 0.87315 0.95989 1.21073 0.98580 0.81868 0.98044 1.45787 1.57445 1.13174 1.20142 1.21320 0.78636 0.88565 0.81562 1.90707 1.43217 1.76879 1.36134 1.21313 0.98480 0.90357 1.01087 0.86336 1.21522 0.91276 0.98884 1.02926 1.21492 1.01508 0.94040 0.97648 1.21188 0.91531 1.01241 0.98033 1.21464 0.95517 0.90251 1.05473 1.23048 1.03424 1.02306 0.93099 1.23084 1.00940 1.00045 0.96293 1.20839 0.99375 0.93537 0.95880 1.21738 1.02366 0.89865 0.93042 1.20847 0.83718 0.88943 0.83854 1.90478 1.45235 1.81500 1.33062 1.41914 1.50050 1.06957 1.22221 1.19644 1.34408 0.84174 1.08043 0.90501 1.25986 0.96274 1.04152 0.94703 1.69667 1.38078 1.37122 1.11167 0.84958 0.78246 0.77028 0.78281 1.19683 1.19493 1.20011 0.94593 0.92555 0.91024 0.91986 0.88225 0.92952 0.92690 0.74508 0.92645 0.89598 0.90479 0.90247 0.90583 0.92083 0.89597 0.87880 0.87508 0.89126 0.92785 0.92891 0.90881 0.86659 0.76927 0.91332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.80 8.96 127.69 1.14 1.94 16 2 N -0.54 -16.88 4.50 -927.03 -4.17 -21.05 16 3 C 0.05 1.11 5.07 86.30 0.44 1.55 16 4 C 0.13 2.96 5.60 86.38 0.48 3.45 16 5 N -0.71 -12.07 5.43 -463.07 -2.51 -14.58 16 6 C 0.51 10.87 7.15 87.66 0.63 11.49 16 7 O -0.59 -18.75 15.96 -3.05 -0.05 -18.80 16 8 C -0.09 -1.25 2.53 -11.50 -0.03 -1.28 16 9 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 10 C -0.11 -1.07 5.03 30.56 0.15 -0.91 16 11 C -0.11 -0.77 5.93 30.64 0.18 -0.59 16 12 C -0.08 -0.75 5.67 30.70 0.17 -0.58 16 13 C -0.13 -1.51 1.97 -52.20 -0.10 -1.62 16 14 C -0.18 -2.10 9.99 30.54 0.31 -1.80 16 15 C -0.17 -1.67 9.93 30.56 0.30 -1.36 16 16 C -0.06 -0.97 4.27 30.71 0.13 -0.84 16 17 C 0.06 2.00 5.45 85.56 0.47 2.46 16 18 C 0.44 20.70 7.47 87.66 0.66 21.35 16 19 O -0.62 -34.24 13.91 -3.07 -0.04 -34.28 16 20 N -0.57 -29.15 5.29 -306.98 -1.62 -30.77 16 21 C -0.33 -18.92 9.68 84.04 0.81 -18.10 16 22 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 23 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 24 N -0.92 -49.16 13.05 21.66 0.28 -48.87 16 25 Si 0.99 43.02 29.55 68.60 2.03 45.05 16 26 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 27 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 28 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 29 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.06 2.30 5.82 -2.39 -0.01 2.29 16 31 H 0.07 2.13 6.47 -2.39 -0.02 2.12 16 32 H 0.06 1.03 8.12 -2.39 -0.02 1.01 16 33 H 0.10 1.70 7.93 -2.39 -0.02 1.68 16 34 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.05 1.44 6.55 -2.39 -0.02 1.42 16 36 H 0.42 3.89 7.85 -92.71 -0.73 3.16 16 37 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.09 0.55 7.47 -2.38 -0.02 0.53 16 39 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.08 0.42 8.14 -2.38 -0.02 0.40 16 41 H 0.08 0.53 8.09 -2.38 -0.02 0.52 16 42 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 47 H 0.05 1.05 8.09 -2.39 -0.02 1.03 16 48 H 0.05 1.11 8.01 -2.39 -0.02 1.09 16 49 H 0.07 2.08 8.12 -2.39 -0.02 2.06 16 50 H 0.12 3.20 7.93 -2.39 -0.02 3.18 16 51 H 0.40 18.94 7.90 -92.71 -0.73 18.21 16 52 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 Total: -1.00 -74.83 412.62 -0.42 -75.25 By element: Atomic # 1 Polarization: 33.57 SS G_CDS: -0.54 Total: 33.03 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: 6.21 Total: 15.02 kcal Atomic # 7 Polarization: -107.25 SS G_CDS: -8.03 Total: -115.28 kcal Atomic # 8 Polarization: -52.99 SS G_CDS: -0.09 Total: -53.08 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -74.83 -0.42 -75.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663185150.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.765 kcal (2) G-P(sol) polarization free energy of solvation -74.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds