Wall clock time and date at job start Tue Mar 31 2020 20:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46902 * 110.99945 * 2 1 4 4 C 1.53004 * 109.47221 * 293.95790 * 3 2 1 5 5 N 1.46496 * 109.47229 * 179.97438 * 4 3 2 6 6 C 1.34781 * 119.99699 * 179.97438 * 5 4 3 7 7 O 1.21280 * 120.00415 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.99514 * 179.97438 * 6 5 4 9 9 H 1.09005 * 109.47639 * 299.99633 * 8 6 5 10 10 C 1.52942 * 109.47740 * 60.01273 * 8 6 5 11 11 C 1.52942 * 109.82400 * 182.97777 * 10 8 6 12 12 C 1.53180 * 109.45044 * 297.01734 * 11 10 8 13 13 C 1.53155 * 108.88166 * 56.56662 * 12 11 10 14 14 C 1.52848 * 117.67198 * 91.48430 * 13 12 11 15 15 C 1.52805 * 117.74987 * 160.36401 * 13 12 11 16 16 C 1.53150 * 115.00785 * 306.05841 * 13 12 11 17 17 C 1.46893 * 111.00644 * 123.95540 * 2 1 3 18 18 C 1.50706 * 109.47176 * 66.04281 * 17 2 1 19 19 O 1.21295 * 119.99584 * 0.02562 * 18 17 2 20 20 N 1.34774 * 120.00020 * 180.02562 * 18 17 2 21 21 C 1.37095 * 119.99737 * 180.02562 * 20 18 17 22 22 H 1.08004 * 120.00254 * 0.02562 * 21 20 18 23 23 C 1.38949 * 119.99943 * 179.97438 * 21 20 18 24 24 N 1.31414 * 120.00135 * 179.97438 * 23 21 20 25 25 Si 1.86794 * 119.99954 * 0.02562 * 23 21 20 26 26 H 1.48506 * 109.47152 * 89.99894 * 25 23 21 27 27 H 1.48501 * 109.47252 * 209.99373 * 25 23 21 28 28 H 1.48500 * 109.47362 * 329.99455 * 25 23 21 29 29 H 1.08997 * 109.47186 * 296.04216 * 1 2 3 30 30 H 1.08993 * 109.47654 * 56.04425 * 1 2 3 31 31 H 1.09000 * 109.47132 * 176.04519 * 1 2 3 32 32 H 1.09000 * 109.46970 * 53.95301 * 3 2 1 33 33 H 1.09003 * 109.47253 * 173.96025 * 3 2 1 34 34 H 1.09004 * 109.46939 * 300.00373 * 4 3 2 35 35 H 1.08999 * 109.47234 * 59.99729 * 4 3 2 36 36 H 0.97000 * 120.00030 * 359.97438 * 5 4 3 37 37 H 1.09003 * 109.41227 * 303.08540 * 10 8 6 38 38 H 1.09000 * 109.41813 * 62.87304 * 10 8 6 39 39 H 1.08996 * 109.47737 * 177.02335 * 11 10 8 40 40 H 1.09008 * 109.47760 * 57.00592 * 11 10 8 41 41 H 1.08999 * 109.56887 * 296.75210 * 12 11 10 42 42 H 1.09005 * 109.57344 * 176.38579 * 12 11 10 43 43 H 1.08999 * 117.50024 * 215.21840 * 14 13 12 44 44 H 1.08999 * 117.50417 * 0.28028 * 14 13 12 45 45 H 1.08999 * 117.50539 * 359.85664 * 15 13 12 46 46 H 1.08999 * 117.50250 * 144.89795 * 15 13 12 47 47 H 1.09007 * 109.56690 * 294.12631 * 16 13 12 48 48 H 1.09002 * 109.66954 * 173.82459 * 16 13 12 49 49 H 1.09001 * 109.46739 * 306.04690 * 17 2 1 50 50 H 1.09000 * 109.47767 * 186.04949 * 17 2 1 51 51 H 0.96994 * 119.99756 * 0.02562 * 20 18 17 52 52 H 0.96994 * 120.00084 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6313 2.0575 -1.3182 5 7 2.1558 3.4254 -1.3180 6 6 1.9551 4.2242 -2.3849 7 8 1.3400 3.8108 -3.3449 8 6 2.4941 5.6315 -2.3843 9 1 2.0587 6.1872 -1.5538 10 6 4.0154 5.5948 -2.2315 11 6 4.5636 7.0206 -2.1556 12 6 4.2665 7.7519 -3.4684 13 6 2.7571 7.7154 -3.7254 14 6 1.9183 8.8778 -3.1948 15 6 2.1758 8.7414 -4.6971 16 6 2.1304 6.3181 -3.7044 17 6 1.9955 -0.7659 1.1375 18 6 1.6370 -2.2204 0.9728 19 8 1.0054 -2.5832 0.0029 20 7 2.0182 -3.1180 1.9031 21 6 1.6925 -4.4412 1.7530 22 1 1.1308 -4.7644 0.8890 23 6 2.0859 -5.3666 2.7118 24 7 1.7733 -6.6349 2.5682 25 14 3.0580 -4.8077 4.2058 26 1 2.1206 -4.4451 5.2990 27 1 3.9452 -5.9088 4.6594 28 1 3.8811 -3.6250 3.8467 29 1 -0.3633 0.4512 0.9233 30 1 -0.3634 0.5739 -0.8523 31 1 -0.3633 -1.0252 -0.0709 32 1 1.5610 1.9273 0.8309 33 1 3.0797 1.3445 0.1081 34 1 2.0656 1.5016 -2.1492 35 1 0.5471 2.0845 -1.4265 36 1 2.6474 3.7562 -0.5500 37 1 4.2751 5.0578 -1.3192 38 1 4.4535 5.0836 -3.0887 39 1 5.6410 6.9876 -1.9938 40 1 4.0880 7.5494 -1.3295 41 1 4.7884 7.2577 -4.2878 42 1 4.5990 8.7873 -3.3930 43 1 0.9153 8.6509 -2.8334 44 1 2.4404 9.6745 -2.6649 45 1 2.8671 9.4486 -5.1555 46 1 1.3421 8.4251 -5.3240 47 1 2.5162 5.7324 -4.5389 48 1 1.0467 6.4008 -3.7866 49 1 1.5612 -0.3872 2.0627 50 1 3.0798 -0.6610 1.1755 51 1 2.5230 -2.8277 2.6788 52 1 2.0483 -7.2810 3.2374 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663185151.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:09 Heat of formation + Delta-G solvation = -53.466516 kcal Electronic energy + Delta-G solvation = -28708.314769 eV Core-core repulsion = 24708.064169 eV Total energy + Delta-G solvation = -4000.250600 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.64645 -39.11909 -38.72561 -36.92175 -35.24656 -34.68154 -33.85902 -31.70039 -31.64140 -29.62570 -28.00627 -27.71953 -25.56336 -24.36301 -23.19940 -22.95128 -22.04686 -21.27202 -20.23320 -19.36871 -19.08356 -18.28161 -17.25721 -16.52230 -16.04168 -16.00538 -15.61482 -15.46284 -15.20139 -14.95116 -14.66568 -14.49591 -14.27671 -13.82726 -13.81531 -13.45446 -13.32598 -13.09895 -13.08241 -12.86108 -12.44378 -12.33310 -12.06643 -11.93758 -11.85234 -11.61283 -11.57667 -11.51732 -11.39534 -11.36983 -11.12675 -11.05335 -10.93860 -10.60791 -10.35984 -10.03678 -9.98260 -9.83683 -9.54910 -9.22174 -8.61802 -8.19348 -8.01333 -6.31507 -3.82975 2.44672 2.84255 3.01174 3.05252 3.13973 3.34441 3.72502 3.96108 4.09373 4.15804 4.18835 4.34622 4.43833 4.58837 4.65879 4.70854 4.74220 4.76440 4.85457 4.94574 4.99450 5.08834 5.13476 5.19855 5.25489 5.31184 5.39167 5.47004 5.49430 5.50506 5.53898 5.59141 5.64967 5.71175 5.73772 5.76111 5.76426 5.80200 5.82627 5.90848 5.94332 5.95849 5.96927 6.22560 6.50446 7.07144 7.21822 7.27761 7.57743 8.02955 8.14151 8.59665 8.94917 9.41786 9.82780 10.81631 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.029722 B = 0.001632 C = 0.001580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.839873 B =17154.233147 C =17718.290177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.515 5.515 3 C 0.045 3.955 4 C 0.120 3.880 5 N -0.729 5.729 6 C 0.515 3.485 7 O -0.537 6.537 8 C -0.102 4.102 9 H 0.097 0.903 10 C -0.111 4.111 11 C -0.114 4.114 12 C -0.083 4.083 13 C -0.124 4.124 14 C -0.176 4.176 15 C -0.174 4.174 16 C -0.060 4.060 17 C 0.045 3.955 18 C 0.452 3.548 19 O -0.557 6.557 20 N -0.591 5.591 21 C -0.305 4.305 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.881 5.881 25 Si 0.880 3.120 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.270 1.270 29 H 0.017 0.983 30 H 0.064 0.936 31 H 0.099 0.901 32 H 0.036 0.964 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.398 0.602 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.093 0.907 44 H 0.092 0.908 45 H 0.093 0.907 46 H 0.094 0.906 47 H 0.076 0.924 48 H 0.070 0.930 49 H 0.050 0.950 50 H 0.090 0.910 51 H 0.370 0.630 52 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.056 33.365 -5.139 34.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.239 5.239 3 C -0.084 4.084 4 C -0.003 4.003 5 N -0.382 5.382 6 C 0.301 3.699 7 O -0.413 6.413 8 C -0.123 4.123 9 H 0.115 0.885 10 C -0.148 4.148 11 C -0.152 4.152 12 C -0.120 4.120 13 C -0.124 4.124 14 C -0.213 4.213 15 C -0.211 4.211 16 C -0.098 4.098 17 C -0.087 4.087 18 C 0.238 3.762 19 O -0.439 6.439 20 N -0.231 5.231 21 C -0.433 4.433 22 H 0.138 0.862 23 C -0.161 4.161 24 N -0.521 5.521 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.195 1.195 29 H 0.035 0.965 30 H 0.083 0.917 31 H 0.118 0.882 32 H 0.054 0.946 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.232 0.768 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.111 0.889 44 H 0.111 0.889 45 H 0.112 0.888 46 H 0.113 0.887 47 H 0.095 0.905 48 H 0.089 0.911 49 H 0.068 0.932 50 H 0.108 0.892 51 H 0.202 0.798 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.327 32.320 -6.849 33.464 hybrid contribution 0.757 0.793 2.520 2.749 sum 6.084 33.113 -4.328 33.945 Atomic orbital electron populations 1.22655 0.86289 1.05068 0.99106 1.61434 1.09090 1.10567 1.42831 1.22250 1.00683 0.89674 0.95800 1.21344 0.99640 0.80827 0.98521 1.45972 1.58113 1.14350 1.19738 1.20655 0.79592 0.87374 0.82251 1.90727 1.40728 1.75703 1.34127 1.21318 0.97284 0.92753 1.00943 0.88525 1.21500 0.92915 0.97747 1.02676 1.21503 1.00753 0.95114 0.97817 1.21168 0.92639 1.00442 0.97766 1.21506 0.94742 0.91330 1.04788 1.23041 1.01098 1.00390 0.96722 1.22984 1.03373 1.02075 0.92686 1.20922 1.00380 0.92397 0.96056 1.21907 1.00778 0.94097 0.91906 1.19608 0.85210 0.86405 0.84989 1.90536 1.42582 1.79910 1.30871 1.42200 1.50976 1.08383 1.21500 1.19433 1.33735 0.80384 1.09777 0.86244 1.25034 0.97882 0.95124 0.98108 1.69620 1.45750 1.01142 1.35604 0.86674 0.80473 0.78846 0.83390 1.19697 1.20174 1.19509 0.96496 0.91726 0.88236 0.94577 0.90297 0.90222 0.91167 0.76789 0.91417 0.91143 0.91423 0.91623 0.91325 0.91758 0.88875 0.88934 0.88849 0.88731 0.90535 0.91137 0.93244 0.89204 0.79754 0.91619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.01 60.06 0.54 0.80 16 2 N -0.51 -8.00 4.50 -244.37 -1.10 -9.10 16 3 C 0.04 0.49 5.07 -3.82 -0.02 0.48 16 4 C 0.12 1.38 5.61 -4.04 -0.02 1.36 16 5 N -0.73 -6.50 5.43 -60.29 -0.33 -6.83 16 6 C 0.52 5.42 7.15 -10.98 -0.08 5.34 16 7 O -0.54 -8.05 15.96 5.56 0.09 -7.96 16 8 C -0.10 -0.73 2.53 -91.71 -0.23 -0.96 16 9 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 10 C -0.11 -0.63 5.03 -26.79 -0.13 -0.77 16 11 C -0.11 -0.54 5.93 -26.67 -0.16 -0.70 16 12 C -0.08 -0.44 5.67 -26.56 -0.15 -0.59 16 13 C -0.12 -0.78 1.97 -154.53 -0.31 -1.08 16 14 C -0.18 -1.00 9.93 -26.79 -0.27 -1.27 16 15 C -0.17 -1.04 9.99 -26.81 -0.27 -1.31 16 16 C -0.06 -0.48 4.27 -26.56 -0.11 -0.59 16 17 C 0.04 0.72 5.45 -4.98 -0.03 0.70 16 18 C 0.45 10.14 7.51 -10.98 -0.08 10.05 16 19 O -0.56 -14.76 13.89 5.54 0.08 -14.68 16 20 N -0.59 -13.91 5.09 -10.96 -0.06 -13.96 16 21 C -0.30 -8.56 10.16 -14.93 -0.15 -8.71 16 22 H 0.12 3.85 7.39 -52.48 -0.39 3.46 16 23 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 24 N -0.88 -25.66 13.96 55.50 0.77 -24.88 16 25 Si 0.88 19.16 27.74 -169.99 -4.71 14.44 16 26 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 27 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 28 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 29 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.91 6.30 -51.93 -0.33 0.58 16 31 H 0.10 1.92 5.88 -51.93 -0.31 1.61 16 32 H 0.04 0.35 8.12 -51.93 -0.42 -0.07 16 33 H 0.08 0.76 7.93 -51.93 -0.41 0.35 16 34 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.07 0.89 6.47 -51.93 -0.34 0.55 16 36 H 0.40 2.34 7.85 -40.82 -0.32 2.02 16 37 H 0.07 0.31 7.47 -51.93 -0.39 -0.08 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 40 H 0.07 0.29 8.14 -51.92 -0.42 -0.13 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.06 0.30 8.09 -51.93 -0.42 -0.12 16 43 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.08 0.73 8.02 -51.93 -0.42 0.31 16 48 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 49 H 0.05 0.70 8.12 -51.93 -0.42 0.28 16 50 H 0.09 1.25 7.93 -51.93 -0.41 0.84 16 51 H 0.37 7.59 5.76 -40.82 -0.24 7.36 16 52 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 409.38 15.07 6.17 6.17 Total: -1.00 -34.28 409.38 -9.70 -43.98 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -9.04 Total: 9.06 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: -1.56 Total: 3.77 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: -0.71 Total: -54.77 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: 0.17 Total: -22.64 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -4.71 Total: 14.44 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -34.28 -9.70 -43.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663185151.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.490 kcal (2) G-P(sol) polarization free energy of solvation -34.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds