Wall clock time and date at job start Tue Mar 31 2020 20:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46902 * 110.99945 * 2 1 4 4 C 1.53004 * 109.47221 * 293.95790 * 3 2 1 5 5 N 1.46496 * 109.47229 * 179.97438 * 4 3 2 6 6 C 1.34781 * 119.99699 * 179.97438 * 5 4 3 7 7 O 1.21280 * 120.00415 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.99514 * 179.97438 * 6 5 4 9 9 H 1.09005 * 109.47639 * 299.99633 * 8 6 5 10 10 C 1.52942 * 109.47740 * 60.01273 * 8 6 5 11 11 C 1.52942 * 109.82400 * 182.97777 * 10 8 6 12 12 C 1.53180 * 109.45044 * 297.01734 * 11 10 8 13 13 C 1.53155 * 108.88166 * 56.56662 * 12 11 10 14 14 C 1.52848 * 117.67198 * 91.48430 * 13 12 11 15 15 C 1.52805 * 117.74987 * 160.36401 * 13 12 11 16 16 C 1.53150 * 115.00785 * 306.05841 * 13 12 11 17 17 C 1.46893 * 111.00644 * 123.95540 * 2 1 3 18 18 C 1.50706 * 109.47176 * 66.04281 * 17 2 1 19 19 O 1.21295 * 119.99584 * 0.02562 * 18 17 2 20 20 N 1.34774 * 120.00020 * 180.02562 * 18 17 2 21 21 C 1.37095 * 119.99737 * 180.02562 * 20 18 17 22 22 H 1.08004 * 120.00254 * 0.02562 * 21 20 18 23 23 C 1.38949 * 119.99943 * 179.97438 * 21 20 18 24 24 N 1.31414 * 120.00135 * 179.97438 * 23 21 20 25 25 Si 1.86794 * 119.99954 * 0.02562 * 23 21 20 26 26 H 1.48506 * 109.47152 * 89.99894 * 25 23 21 27 27 H 1.48501 * 109.47252 * 209.99373 * 25 23 21 28 28 H 1.48500 * 109.47362 * 329.99455 * 25 23 21 29 29 H 1.08997 * 109.47186 * 296.04216 * 1 2 3 30 30 H 1.08993 * 109.47654 * 56.04425 * 1 2 3 31 31 H 1.09000 * 109.47132 * 176.04519 * 1 2 3 32 32 H 1.09000 * 109.46970 * 53.95301 * 3 2 1 33 33 H 1.09003 * 109.47253 * 173.96025 * 3 2 1 34 34 H 1.09004 * 109.46939 * 300.00373 * 4 3 2 35 35 H 1.08999 * 109.47234 * 59.99729 * 4 3 2 36 36 H 0.97000 * 120.00030 * 359.97438 * 5 4 3 37 37 H 1.09003 * 109.41227 * 303.08540 * 10 8 6 38 38 H 1.09000 * 109.41813 * 62.87304 * 10 8 6 39 39 H 1.08996 * 109.47737 * 177.02335 * 11 10 8 40 40 H 1.09008 * 109.47760 * 57.00592 * 11 10 8 41 41 H 1.08999 * 109.56887 * 296.75210 * 12 11 10 42 42 H 1.09005 * 109.57344 * 176.38579 * 12 11 10 43 43 H 1.08999 * 117.50024 * 215.21840 * 14 13 12 44 44 H 1.08999 * 117.50417 * 0.28028 * 14 13 12 45 45 H 1.08999 * 117.50539 * 359.85664 * 15 13 12 46 46 H 1.08999 * 117.50250 * 144.89795 * 15 13 12 47 47 H 1.09007 * 109.56690 * 294.12631 * 16 13 12 48 48 H 1.09002 * 109.66954 * 173.82459 * 16 13 12 49 49 H 1.09001 * 109.46739 * 306.04690 * 17 2 1 50 50 H 1.09000 * 109.47767 * 186.04949 * 17 2 1 51 51 H 0.96994 * 119.99756 * 0.02562 * 20 18 17 52 52 H 0.96994 * 120.00084 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6313 2.0575 -1.3182 5 7 2.1558 3.4254 -1.3180 6 6 1.9551 4.2242 -2.3849 7 8 1.3400 3.8108 -3.3449 8 6 2.4941 5.6315 -2.3843 9 1 2.0587 6.1872 -1.5538 10 6 4.0154 5.5948 -2.2315 11 6 4.5636 7.0206 -2.1556 12 6 4.2665 7.7519 -3.4684 13 6 2.7571 7.7154 -3.7254 14 6 1.9183 8.8778 -3.1948 15 6 2.1758 8.7414 -4.6971 16 6 2.1304 6.3181 -3.7044 17 6 1.9955 -0.7659 1.1375 18 6 1.6370 -2.2204 0.9728 19 8 1.0054 -2.5832 0.0029 20 7 2.0182 -3.1180 1.9031 21 6 1.6925 -4.4412 1.7530 22 1 1.1308 -4.7644 0.8890 23 6 2.0859 -5.3666 2.7118 24 7 1.7733 -6.6349 2.5682 25 14 3.0580 -4.8077 4.2058 26 1 2.1206 -4.4451 5.2990 27 1 3.9452 -5.9088 4.6594 28 1 3.8811 -3.6250 3.8467 29 1 -0.3633 0.4512 0.9233 30 1 -0.3634 0.5739 -0.8523 31 1 -0.3633 -1.0252 -0.0709 32 1 1.5610 1.9273 0.8309 33 1 3.0797 1.3445 0.1081 34 1 2.0656 1.5016 -2.1492 35 1 0.5471 2.0845 -1.4265 36 1 2.6474 3.7562 -0.5500 37 1 4.2751 5.0578 -1.3192 38 1 4.4535 5.0836 -3.0887 39 1 5.6410 6.9876 -1.9938 40 1 4.0880 7.5494 -1.3295 41 1 4.7884 7.2577 -4.2878 42 1 4.5990 8.7873 -3.3930 43 1 0.9153 8.6509 -2.8334 44 1 2.4404 9.6745 -2.6649 45 1 2.8671 9.4486 -5.1555 46 1 1.3421 8.4251 -5.3240 47 1 2.5162 5.7324 -4.5389 48 1 1.0467 6.4008 -3.7866 49 1 1.5612 -0.3872 2.0627 50 1 3.0798 -0.6610 1.1755 51 1 2.5230 -2.8277 2.6788 52 1 2.0483 -7.2810 3.2374 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663185151.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:08 Heat of formation + Delta-G solvation = -79.217083 kcal Electronic energy + Delta-G solvation = -28709.431397 eV Core-core repulsion = 24708.064169 eV Total energy + Delta-G solvation = -4001.367229 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.36580 -40.50720 -39.64141 -38.20818 -36.05574 -35.80589 -35.41628 -33.74198 -32.21738 -30.67304 -29.20305 -28.35155 -27.03185 -25.62273 -24.18600 -23.38953 -22.52754 -22.29661 -21.26846 -21.01105 -20.16634 -19.58206 -18.09791 -17.63481 -17.37740 -16.91211 -16.77988 -16.35269 -16.29699 -16.03497 -15.58601 -15.47885 -15.26144 -15.12752 -14.81669 -14.65430 -14.41454 -14.21524 -14.10974 -13.82260 -13.70311 -13.46467 -13.09206 -12.96499 -12.78183 -12.57728 -12.56774 -12.37991 -12.37603 -12.13699 -12.09521 -12.04650 -11.96440 -11.80572 -11.48957 -11.45417 -10.82701 -10.73448 -10.43033 -10.36712 -10.21882 -10.10356 -9.23836 -8.39587 -6.00626 1.31338 1.37266 1.46364 1.62201 1.98457 2.00739 2.24934 2.75129 2.88381 3.16729 3.28023 3.59713 3.66777 3.82500 3.87718 3.94698 4.06650 4.10389 4.13572 4.20438 4.23660 4.34121 4.37277 4.44263 4.46601 4.48908 4.55105 4.61139 4.64542 4.69424 4.82096 4.87418 4.91740 4.95876 5.06171 5.08645 5.12228 5.17204 5.21403 5.22477 5.29829 5.30616 5.37869 5.47287 5.52490 5.54642 5.88358 5.99675 6.15139 6.55208 6.61929 6.90806 7.26283 7.42105 8.00590 8.78255 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.029722 B = 0.001632 C = 0.001580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.839873 B =17154.233147 C =17718.290177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.544 5.544 3 C 0.055 3.945 4 C 0.127 3.873 5 N -0.712 5.712 6 C 0.511 3.489 7 O -0.590 6.590 8 C -0.091 4.091 9 H 0.119 0.881 10 C -0.108 4.108 11 C -0.110 4.110 12 C -0.083 4.083 13 C -0.127 4.127 14 C -0.166 4.166 15 C -0.183 4.183 16 C -0.059 4.059 17 C 0.058 3.942 18 C 0.449 3.551 19 O -0.608 6.608 20 N -0.591 5.591 21 C -0.328 4.328 22 H 0.052 0.948 23 C -0.017 4.017 24 N -0.937 5.937 25 Si 0.967 3.033 26 H -0.257 1.257 27 H -0.277 1.277 28 H -0.228 1.228 29 H 0.039 0.961 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.103 0.897 34 H 0.051 0.949 35 H 0.054 0.946 36 H 0.418 0.582 37 H 0.087 0.913 38 H 0.054 0.946 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.060 0.940 42 H 0.076 0.924 43 H 0.090 0.910 44 H 0.107 0.893 45 H 0.103 0.897 46 H 0.085 0.915 47 H 0.052 0.948 48 H 0.053 0.947 49 H 0.085 0.915 50 H 0.126 0.874 51 H 0.390 0.610 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.888 37.432 -1.613 38.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.269 5.269 3 C -0.073 4.073 4 C 0.002 3.998 5 N -0.365 5.365 6 C 0.299 3.701 7 O -0.470 6.470 8 C -0.112 4.112 9 H 0.137 0.863 10 C -0.146 4.146 11 C -0.147 4.147 12 C -0.120 4.120 13 C -0.127 4.127 14 C -0.203 4.203 15 C -0.220 4.220 16 C -0.097 4.097 17 C -0.073 4.073 18 C 0.236 3.764 19 O -0.492 6.492 20 N -0.234 5.234 21 C -0.458 4.458 22 H 0.071 0.929 23 C -0.215 4.215 24 N -0.577 5.577 25 Si 0.786 3.214 26 H -0.182 1.182 27 H -0.202 1.202 28 H -0.151 1.151 29 H 0.057 0.943 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.121 0.879 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.256 0.744 37 H 0.105 0.895 38 H 0.073 0.927 39 H 0.098 0.902 40 H 0.096 0.904 41 H 0.079 0.921 42 H 0.094 0.906 43 H 0.109 0.891 44 H 0.125 0.875 45 H 0.121 0.879 46 H 0.104 0.896 47 H 0.070 0.930 48 H 0.072 0.928 49 H 0.103 0.897 50 H 0.144 0.856 51 H 0.226 0.774 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.185 36.441 -3.295 37.494 hybrid contribution -0.240 -0.492 1.236 1.352 sum 7.945 35.948 -2.060 36.873 Atomic orbital electron populations 1.22468 0.87035 1.02389 1.00599 1.61289 1.08810 1.13482 1.43315 1.22244 1.02046 0.87127 0.95896 1.21101 0.98542 0.81886 0.98252 1.45770 1.57527 1.13112 1.20079 1.21323 0.78622 0.88584 0.81593 1.90710 1.43194 1.76907 1.36196 1.21311 0.98534 0.90346 1.01029 0.86285 1.21521 0.91233 0.98863 1.02961 1.21494 1.01535 0.94053 0.97609 1.21194 0.91496 1.01240 0.98086 1.21471 0.95541 0.90256 1.05437 1.23084 1.00921 1.00057 0.96260 1.23047 1.03438 1.02349 0.93135 1.20841 0.99363 0.93539 0.95939 1.21841 1.03046 0.88927 0.93500 1.20984 0.82944 0.89042 0.83391 1.90532 1.44247 1.81517 1.32908 1.42010 1.51826 1.06702 1.22815 1.18992 1.34781 0.83303 1.08684 0.92938 1.26147 0.98688 0.94614 1.02061 1.69815 1.47349 1.03094 1.37482 0.85342 0.78841 0.79749 0.77423 1.18174 1.20201 1.15069 0.94272 0.91039 0.92848 0.91669 0.87861 0.93076 0.92819 0.74431 0.89453 0.92692 0.90221 0.90444 0.92120 0.90582 0.89124 0.87481 0.87899 0.89641 0.92956 0.92817 0.89738 0.85647 0.77420 0.91210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.71 9.01 127.69 1.15 1.86 16 2 N -0.54 -15.69 4.50 -927.06 -4.17 -19.86 16 3 C 0.05 0.99 5.07 86.30 0.44 1.43 16 4 C 0.13 2.73 5.61 86.38 0.48 3.21 16 5 N -0.71 -11.05 5.43 -463.05 -2.51 -13.56 16 6 C 0.51 10.38 7.15 87.66 0.63 11.01 16 7 O -0.59 -18.41 15.96 -3.03 -0.05 -18.46 16 8 C -0.09 -1.17 2.53 -11.50 -0.03 -1.19 16 9 H 0.12 1.04 8.14 -2.38 -0.02 1.02 16 10 C -0.11 -0.96 5.03 30.56 0.15 -0.80 16 11 C -0.11 -0.67 5.93 30.64 0.18 -0.49 16 12 C -0.08 -0.71 5.67 30.71 0.17 -0.53 16 13 C -0.13 -1.45 1.97 -52.20 -0.10 -1.55 16 14 C -0.17 -1.58 9.93 30.55 0.30 -1.28 16 15 C -0.18 -2.05 9.99 30.54 0.31 -1.75 16 16 C -0.06 -0.95 4.27 30.70 0.13 -0.82 16 17 C 0.06 1.66 5.45 85.56 0.47 2.13 16 18 C 0.45 19.98 7.51 87.66 0.66 20.64 16 19 O -0.61 -33.77 13.89 -3.08 -0.04 -33.81 16 20 N -0.59 -27.46 5.09 -306.98 -1.56 -29.02 16 21 C -0.33 -19.23 10.16 84.04 0.85 -18.38 16 22 H 0.05 3.69 7.39 -2.91 -0.02 3.67 16 23 C -0.02 -0.93 5.50 84.93 0.47 -0.46 16 24 N -0.94 -56.65 13.96 21.66 0.30 -56.35 16 25 Si 0.97 38.13 27.74 68.60 1.90 40.03 16 26 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 27 H -0.28 -10.92 7.11 99.48 0.71 -10.21 16 28 H -0.23 -7.38 6.52 99.48 0.65 -6.73 16 29 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.07 2.03 6.30 -2.39 -0.02 2.01 16 31 H 0.05 2.14 5.88 -2.39 -0.01 2.13 16 32 H 0.07 0.88 8.12 -2.39 -0.02 0.86 16 33 H 0.10 1.43 7.93 -2.39 -0.02 1.41 16 34 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 35 H 0.05 1.34 6.47 -2.39 -0.02 1.33 16 36 H 0.42 3.16 7.85 -92.71 -0.73 2.43 16 37 H 0.09 0.44 7.47 -2.39 -0.02 0.43 16 38 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 40 H 0.08 0.34 8.14 -2.38 -0.02 0.32 16 41 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.08 0.49 8.09 -2.38 -0.02 0.47 16 43 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.05 1.08 8.02 -2.38 -0.02 1.06 16 48 H 0.05 1.02 8.10 -2.39 -0.02 1.00 16 49 H 0.08 1.92 8.12 -2.39 -0.02 1.90 16 50 H 0.13 2.79 7.93 -2.39 -0.02 2.77 16 51 H 0.39 14.70 5.76 -92.71 -0.53 14.17 16 52 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -84.45 409.38 -0.27 -84.72 By element: Atomic # 1 Polarization: 33.70 SS G_CDS: -0.40 Total: 33.30 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: 6.26 Total: 13.01 kcal Atomic # 7 Polarization: -110.85 SS G_CDS: -7.95 Total: -118.80 kcal Atomic # 8 Polarization: -52.18 SS G_CDS: -0.09 Total: -52.27 kcal Atomic # 14 Polarization: 38.13 SS G_CDS: 1.90 Total: 40.03 kcal Total: -84.45 -0.27 -84.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663185151.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.507 kcal (2) G-P(sol) polarization free energy of solvation -84.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds