Wall clock time and date at job start Tue Mar 31 2020 19:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46504 * 119.99918 * 2 1 4 4 C 1.53003 * 109.47435 * 270.00319 * 3 2 1 5 5 C 1.52998 * 109.47509 * 179.97438 * 4 3 2 6 6 N 1.46894 * 109.47053 * 180.02562 * 5 4 3 7 7 C 1.46902 * 110.99821 * 180.02562 * 6 5 4 8 8 C 1.50704 * 109.47126 * 180.02562 * 7 6 5 9 9 O 1.21285 * 120.00134 * 359.97438 * 8 7 6 10 10 N 1.34775 * 119.99825 * 179.97438 * 8 7 6 11 11 C 1.37100 * 119.99977 * 179.97438 * 10 8 7 12 12 H 1.08004 * 119.99998 * 0.02562 * 11 10 8 13 13 C 1.38949 * 120.00129 * 180.02562 * 11 10 8 14 14 N 1.31408 * 120.00051 * 180.02562 * 13 11 10 15 15 Si 1.86802 * 120.00074 * 359.97438 * 13 11 10 16 16 H 1.48494 * 109.47190 * 90.00160 * 15 13 11 17 17 H 1.48498 * 109.47231 * 210.00243 * 15 13 11 18 18 H 1.48504 * 109.46840 * 330.00491 * 15 13 11 19 19 C 1.34767 * 120.00228 * 180.02562 * 2 1 3 20 20 O 1.21285 * 120.00142 * 179.97438 * 19 2 1 21 21 C 1.50700 * 120.00306 * 359.97438 * 19 2 1 22 22 H 1.09003 * 115.56843 * 34.15079 * 21 19 2 23 23 C 1.52300 * 117.54243 * 180.02562 * 21 19 2 24 24 H 1.09003 * 115.91656 * 1.65816 * 23 21 19 25 25 C 1.52074 * 119.83874 * 217.26903 * 23 21 19 26 26 C 1.52865 * 110.51692 * 310.44587 * 25 23 21 27 27 C 1.53301 * 108.58959 * 305.11132 * 26 25 23 28 28 C 1.52876 * 108.58234 * 74.44286 * 27 26 25 29 29 C 1.52062 * 60.63978 * 107.44982 * 23 21 19 30 30 H 1.09005 * 117.25211 * 253.96507 * 29 23 21 31 31 H 1.08998 * 109.46632 * 269.99872 * 1 2 3 32 32 H 1.08996 * 109.47487 * 29.99698 * 1 2 3 33 33 H 1.08997 * 109.46669 * 149.99973 * 1 2 3 34 34 H 1.08998 * 109.46839 * 30.00052 * 3 2 1 35 35 H 1.09001 * 109.47222 * 150.00257 * 3 2 1 36 36 H 1.09000 * 109.46580 * 300.00410 * 4 3 2 37 37 H 1.09001 * 109.46966 * 59.99781 * 4 3 2 38 38 H 1.08997 * 109.46928 * 300.00404 * 5 4 3 39 39 H 1.08996 * 109.46810 * 59.99605 * 5 4 3 40 40 H 1.00897 * 111.00481 * 56.05058 * 6 5 4 41 41 H 1.09001 * 109.46935 * 299.99983 * 7 6 5 42 42 H 1.09000 * 109.47715 * 59.99783 * 7 6 5 43 43 H 0.97007 * 120.00286 * 0.02562 * 10 8 7 44 44 H 0.96999 * 120.00129 * 179.97438 * 14 13 11 45 45 H 1.09004 * 109.26771 * 190.17801 * 25 23 21 46 46 H 1.09001 * 109.24126 * 70.69605 * 25 23 21 47 47 H 1.08999 * 109.62318 * 185.38146 * 26 25 23 48 48 H 1.09004 * 109.61808 * 64.84094 * 26 25 23 49 49 H 1.09004 * 109.62166 * 314.71046 * 27 26 25 50 50 H 1.09006 * 109.77283 * 194.25731 * 27 26 25 51 51 H 1.09000 * 109.35999 * 65.68383 * 28 27 26 52 52 H 1.09002 * 109.36163 * 185.27532 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7106 -1.4425 5 6 3.2169 3.0359 -1.4425 6 7 3.4611 3.4603 -2.8275 7 6 4.1953 4.7320 -2.8666 8 6 4.4262 5.1348 -4.3004 9 8 4.0197 4.4314 -5.2009 10 7 5.0846 6.2766 -4.5819 11 6 5.2951 6.6428 -5.8862 12 1 4.9331 6.0164 -6.6881 13 6 5.9743 7.8197 -6.1764 14 7 6.1757 8.1709 -7.4266 15 14 6.5999 8.9035 -4.7895 16 1 7.9782 8.4909 -4.4221 17 1 6.6092 10.3203 -5.2341 18 1 5.7094 8.7607 -3.6096 19 6 2.1389 -1.1671 -0.0005 20 8 3.3517 -1.1671 -0.0010 21 6 1.3855 -2.4723 -0.0005 22 1 0.4453 -2.4728 -0.5521 23 6 2.2030 -3.7573 -0.0005 24 1 3.2855 -3.6332 0.0278 25 6 1.7234 -4.9592 -0.7993 26 6 0.2550 -5.2544 -0.4935 27 6 0.0960 -5.4243 1.0217 28 6 0.1772 -4.0459 1.6777 29 6 1.4675 -3.3415 1.2638 30 1 2.0677 -2.9461 2.0833 31 1 -0.3632 0.0000 1.0277 32 1 -0.3634 0.8900 -0.5138 33 1 -0.3632 -0.8900 -0.5138 34 1 1.6084 2.0284 0.5138 35 1 3.1499 1.1385 0.5138 36 1 3.0415 0.9509 -1.9563 37 1 1.5000 1.8409 -1.9563 38 1 2.6274 3.7953 -0.9287 39 1 4.1692 2.9060 -0.9286 40 1 2.5965 3.5255 -3.3435 41 1 3.6132 5.5033 -2.3622 42 1 5.1547 4.6135 -2.3631 43 1 5.4101 6.8391 -3.8616 44 1 6.6495 8.9927 -7.6292 45 1 2.3269 -5.8285 -0.5384 46 1 1.8343 -4.7507 -1.8635 47 1 -0.0467 -6.1721 -0.9983 48 1 -0.3640 -4.4250 -0.8357 49 1 0.8947 -6.0596 1.4046 50 1 -0.8702 -5.8782 1.2424 51 1 -0.6778 -3.4462 1.3656 52 1 0.1597 -4.1599 2.7616 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670057521.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:32 Heat of formation + Delta-G solvation = -56.910261 kcal Electronic energy + Delta-G solvation = -28347.384099 eV Core-core repulsion = 24346.984167 eV Total energy + Delta-G solvation = -4000.399932 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.93600 -39.04158 -38.45262 -36.58709 -35.45788 -33.91874 -33.58324 -31.91004 -31.56639 -31.24120 -27.93452 -26.99232 -25.99877 -24.59092 -23.37787 -22.98532 -22.16922 -21.38901 -19.60633 -19.33635 -18.56410 -18.29842 -17.81672 -16.60624 -16.18159 -15.80020 -15.72011 -15.55195 -14.93656 -14.65226 -14.48124 -14.40176 -14.33268 -14.07150 -13.80341 -13.58155 -13.31413 -13.12472 -12.95487 -12.78385 -12.70900 -12.50425 -12.31236 -12.15196 -12.10600 -11.81668 -11.74730 -11.58284 -11.43623 -11.31493 -11.14381 -10.79253 -10.75225 -10.57768 -10.37385 -10.15286 -9.95612 -9.88432 -9.55050 -8.96847 -8.55831 -8.16773 -8.09527 -6.28949 -3.80269 2.20991 2.64402 3.04057 3.08945 3.16528 3.38359 3.77047 4.01044 4.11553 4.16418 4.24825 4.25708 4.41675 4.50459 4.62311 4.68066 4.78840 4.82529 4.85957 4.89534 4.98089 5.04838 5.11439 5.12652 5.23023 5.24052 5.26498 5.28473 5.33031 5.45332 5.46004 5.47540 5.52657 5.64399 5.65667 5.66483 5.75958 5.79191 5.84288 5.86429 5.94652 5.95738 6.04152 6.09846 6.31889 7.06888 7.14706 7.60362 7.62594 7.94232 8.16992 8.62417 8.97347 9.44868 9.85615 10.84260 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.028572 B = 0.001527 C = 0.001497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.731259 B =18330.591721 C =18693.549304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.614 5.614 3 C 0.117 3.883 4 C -0.131 4.131 5 C 0.064 3.936 6 N -0.669 5.669 7 C 0.049 3.951 8 C 0.450 3.550 9 O -0.564 6.564 10 N -0.591 5.591 11 C -0.305 4.305 12 H 0.119 0.881 13 C 0.041 3.959 14 N -0.882 5.882 15 Si 0.880 3.120 16 H -0.270 1.270 17 H -0.277 1.277 18 H -0.270 1.270 19 C 0.542 3.458 20 O -0.535 6.535 21 C -0.194 4.194 22 H 0.124 0.876 23 C -0.104 4.104 24 H 0.113 0.887 25 C -0.091 4.091 26 C -0.124 4.124 27 C -0.120 4.120 28 C -0.090 4.090 29 C -0.116 4.116 30 H 0.105 0.895 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.062 0.938 38 H 0.026 0.974 39 H 0.073 0.927 40 H 0.350 0.650 41 H 0.044 0.956 42 H 0.087 0.913 43 H 0.370 0.630 44 H 0.273 0.727 45 H 0.073 0.927 46 H 0.071 0.929 47 H 0.066 0.934 48 H 0.063 0.937 49 H 0.066 0.934 50 H 0.064 0.936 51 H 0.067 0.933 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.677 -23.149 23.653 36.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.346 5.346 3 C -0.006 4.006 4 C -0.170 4.170 5 C -0.066 4.066 6 N -0.302 5.302 7 C -0.084 4.084 8 C 0.236 3.764 9 O -0.446 6.446 10 N -0.231 5.231 11 C -0.434 4.434 12 H 0.137 0.863 13 C -0.162 4.162 14 N -0.522 5.522 15 Si 0.707 3.293 16 H -0.196 1.196 17 H -0.202 1.202 18 H -0.196 1.196 19 C 0.330 3.670 20 O -0.412 6.412 21 C -0.215 4.215 22 H 0.142 0.858 23 C -0.122 4.122 24 H 0.131 0.869 25 C -0.128 4.128 26 C -0.161 4.161 27 C -0.157 4.157 28 C -0.128 4.128 29 C -0.134 4.134 30 H 0.123 0.877 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.081 0.919 38 H 0.044 0.956 39 H 0.091 0.909 40 H 0.169 0.831 41 H 0.062 0.938 42 H 0.106 0.894 43 H 0.203 0.797 44 H 0.084 0.916 45 H 0.091 0.909 46 H 0.089 0.911 47 H 0.085 0.915 48 H 0.081 0.919 49 H 0.085 0.915 50 H 0.083 0.917 51 H 0.086 0.914 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.658 -23.826 22.805 36.091 hybrid contribution -0.215 1.951 1.152 2.276 sum -14.873 -21.874 23.957 35.688 Atomic orbital electron populations 1.21820 0.79419 1.03347 1.01828 1.47747 1.07046 1.05964 1.73882 1.21457 0.97766 0.84011 0.97333 1.21889 1.00723 0.97980 0.96451 1.21854 0.99601 0.95013 0.90170 1.60005 1.27520 1.30649 1.11994 1.21705 0.99598 0.90639 0.96492 1.19729 0.83848 0.82943 0.89894 1.90562 1.53612 1.52894 1.47541 1.42207 1.51879 1.20869 1.08129 1.19442 1.34317 1.06862 0.82763 0.86300 1.25033 0.97480 0.97155 0.96485 1.69622 1.41099 1.24446 1.17040 0.86663 0.79776 0.81068 0.81821 1.19587 1.20204 1.19551 1.19731 0.87328 0.84412 0.75496 1.90715 1.13844 1.87175 1.49436 1.22527 1.02685 0.90314 1.05934 0.85813 1.21897 0.99279 0.93044 0.97998 0.86872 1.20898 0.96101 0.96154 0.99629 1.21636 0.96541 1.01735 0.96219 1.21576 1.01896 0.96777 0.95489 1.21086 0.95149 0.95971 1.00552 1.22357 0.99659 1.00335 0.91082 0.87658 0.92509 0.90861 0.90941 0.90577 0.89670 0.90365 0.91927 0.95579 0.90903 0.83111 0.93822 0.89442 0.79686 0.91638 0.90878 0.91076 0.91529 0.91874 0.91507 0.91743 0.91405 0.91237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.44 10.27 59.85 0.61 1.05 16 2 N -0.61 -5.57 2.87 -181.57 -0.52 -6.09 16 3 C 0.12 1.11 5.41 -4.04 -0.02 1.09 16 4 C -0.13 -1.48 5.80 -26.73 -0.15 -1.64 16 5 C 0.06 0.78 5.69 -3.83 -0.02 0.76 16 6 N -0.67 -10.99 6.13 -115.06 -0.70 -11.69 16 7 C 0.05 0.84 6.17 -4.97 -0.03 0.81 16 8 C 0.45 10.57 7.82 -10.98 -0.09 10.49 16 9 O -0.56 -15.65 15.78 5.55 0.09 -15.57 16 10 N -0.59 -14.45 5.09 -10.96 -0.06 -14.50 16 11 C -0.31 -8.81 10.16 -14.93 -0.15 -8.97 16 12 H 0.12 3.92 7.39 -52.48 -0.39 3.53 16 13 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 14 N -0.88 -26.11 13.96 55.50 0.77 -25.33 16 15 Si 0.88 19.66 27.74 -169.99 -4.71 14.94 16 16 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 17 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 18 H -0.27 -5.49 6.52 56.52 0.37 -5.12 16 19 C 0.54 6.01 7.47 -10.99 -0.08 5.93 16 20 O -0.54 -8.11 15.77 5.55 0.09 -8.02 16 21 C -0.19 -1.54 4.42 -91.79 -0.41 -1.95 16 22 H 0.12 0.79 5.55 -51.93 -0.29 0.50 16 23 C -0.10 -0.82 5.57 -91.93 -0.51 -1.33 16 24 H 0.11 1.13 7.55 -51.93 -0.39 0.74 16 25 C -0.09 -0.55 5.93 -27.27 -0.16 -0.72 16 26 C -0.12 -0.60 5.70 -26.64 -0.15 -0.75 16 27 C -0.12 -0.53 5.93 -26.64 -0.16 -0.69 16 28 C -0.09 -0.43 5.83 -26.94 -0.16 -0.58 16 29 C -0.12 -0.79 5.90 -90.91 -0.54 -1.32 16 30 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 0.35 8.07 -51.93 -0.42 -0.07 16 33 H 0.07 0.32 5.99 -51.93 -0.31 0.01 16 34 H 0.08 0.55 8.07 -51.93 -0.42 0.13 16 35 H 0.08 0.93 7.42 -51.93 -0.39 0.55 16 36 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.03 0.28 8.14 -51.93 -0.42 -0.15 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.35 5.84 8.43 -39.29 -0.33 5.51 16 41 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 43 H 0.37 7.93 5.76 -40.82 -0.24 7.69 16 44 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 45 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 46 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 48 H 0.06 0.31 7.11 -51.93 -0.37 -0.06 16 49 H 0.07 0.31 8.04 -51.93 -0.42 -0.10 16 50 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 51 H 0.07 0.28 8.06 -51.93 -0.42 -0.14 16 52 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 413.22 15.07 6.23 6.23 Total: -1.00 -35.67 413.22 -9.97 -45.64 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: -9.04 Total: 11.17 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: -2.11 Total: 3.22 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: -0.51 Total: -57.62 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: 0.18 Total: -23.59 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -4.71 Total: 14.94 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -35.67 -9.97 -45.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670057521.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.269 kcal (2) G-P(sol) polarization free energy of solvation -35.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds