Wall clock time and date at job start Tue Mar 31 2020 22:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46903 * 111.00304 * 2 1 4 4 C 1.50693 * 109.46774 * 66.04375 * 3 2 1 5 5 H 1.08001 * 120.00597 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99934 * 179.97438 * 4 3 2 7 7 N 1.31509 * 119.99882 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 120.00027 * 180.02562 * 6 4 3 9 9 H 1.48489 * 109.47123 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.46719 * 120.00697 * 8 6 4 11 11 H 1.48500 * 109.47039 * 240.00328 * 8 6 4 12 12 C 1.46899 * 111.00013 * 236.04731 * 2 1 3 13 13 C 1.53006 * 109.47053 * 293.95323 * 12 2 1 14 14 H 1.08996 * 109.46729 * 60.00377 * 13 12 2 15 15 O 1.42896 * 109.47276 * 299.99826 * 13 12 2 16 16 C 1.53003 * 109.47039 * 180.02562 * 13 12 2 17 17 N 1.46897 * 109.47156 * 185.00326 * 16 13 12 18 18 C 1.46897 * 111.00226 * 180.02562 * 17 16 13 19 19 C 1.50701 * 109.47216 * 179.97438 * 18 17 16 20 20 N 1.30681 * 126.43354 * 89.97244 * 19 18 17 21 21 N 1.28752 * 109.70166 * 179.61975 * 20 19 18 22 22 C 1.30241 * 109.54603 * 359.71614 * 21 20 19 23 23 N 1.35107 * 126.41961 * 269.97011 * 19 18 17 24 24 C 1.46311 * 127.26971 * 1.30360 * 23 19 18 25 25 C 1.53122 * 109.40630 * 207.60358 * 24 23 19 26 26 C 1.52797 * 109.68177 * 270.74809 * 25 24 23 27 27 C 1.52560 * 110.51220 * 61.41252 * 26 25 24 28 28 C 1.50671 * 127.21823 * 180.98216 * 22 21 20 29 29 H 1.09005 * 109.47069 * 183.95122 * 1 2 3 30 30 H 1.09003 * 109.47201 * 303.95389 * 1 2 3 31 31 H 1.09001 * 109.47078 * 63.95261 * 1 2 3 32 32 H 1.09001 * 109.47141 * 186.04662 * 3 2 1 33 33 H 1.08999 * 109.46529 * 306.04588 * 3 2 1 34 34 H 0.97002 * 120.00408 * 179.97438 * 7 6 4 35 35 H 1.09004 * 109.47336 * 173.95337 * 12 2 1 36 36 H 1.09005 * 109.47424 * 53.95481 * 12 2 1 37 37 H 0.96704 * 113.99805 * 300.00370 * 15 13 12 38 38 H 1.09002 * 109.47542 * 64.99779 * 16 13 12 39 39 H 1.09004 * 109.47255 * 304.99755 * 16 13 12 40 40 H 1.00895 * 111.00211 * 56.04182 * 17 16 13 41 41 H 1.08997 * 109.47170 * 59.99802 * 18 17 16 42 42 H 1.08999 * 109.46720 * 299.99608 * 18 17 16 43 43 H 1.09002 * 109.48689 * 87.61541 * 24 23 19 44 44 H 1.08999 * 109.48047 * 327.58614 * 24 23 19 45 45 H 1.08994 * 109.43879 * 30.81742 * 25 24 23 46 46 H 1.09007 * 109.43331 * 150.69216 * 25 24 23 47 47 H 1.09000 * 109.27064 * 181.67991 * 26 25 24 48 48 H 1.09007 * 109.27118 * 301.18370 * 26 25 24 49 49 H 1.09001 * 109.45760 * 153.46057 * 27 26 25 50 50 H 1.09002 * 109.46081 * 273.40132 * 27 26 25 51 51 H 1.09003 * 109.53019 * 106.97900 * 28 22 21 52 52 H 1.09000 * 109.59596 * 346.79090 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 1.2984 5 1 1.0746 1.5112 2.0488 6 6 2.0277 3.3491 1.5289 7 7 2.7129 4.0014 0.6155 8 14 1.5838 4.1864 3.1387 9 1 0.8166 3.2438 3.9918 10 1 2.8259 4.5930 3.8440 11 1 0.7569 5.3880 2.8601 12 6 1.9954 -0.7659 -1.1376 13 6 1.6314 -2.2426 -0.9703 14 1 0.5471 -2.3475 -0.9324 15 8 2.2008 -2.7392 0.2425 16 6 2.1803 -3.0405 -2.1549 17 7 1.7298 -4.4353 -2.0566 18 6 2.2393 -5.2334 -3.1797 19 6 1.7582 -6.6552 -3.0446 20 7 0.6515 -7.1497 -3.5330 21 7 0.5645 -8.3987 -3.2326 22 6 1.6123 -8.7558 -2.5462 23 7 2.3902 -7.6576 -2.3958 24 6 3.6555 -7.5812 -1.6652 25 6 4.3383 -8.9516 -1.6853 26 6 3.8729 -9.7760 -0.4860 27 6 2.3662 -10.0076 -0.5487 28 6 1.9265 -10.1286 -2.0108 29 1 -0.3633 -1.0253 0.0708 30 1 -0.3634 0.5740 0.8525 31 1 -0.3633 0.4513 -0.9233 32 1 3.0797 1.3443 -0.1083 33 1 1.5611 1.9273 -0.8309 34 1 2.9875 4.9176 0.7774 35 1 3.0797 -0.6611 -1.1757 36 1 1.5611 -0.3872 -2.0629 37 1 3.1652 -2.6771 0.2786 38 1 3.2697 -3.0087 -2.1409 39 1 1.8160 -2.6059 -3.0858 40 1 0.7236 -4.4873 -2.0027 41 1 3.3291 -5.2168 -3.1723 42 1 1.8759 -4.8141 -4.1178 43 1 3.4626 -7.2861 -0.6337 44 1 4.3047 -6.8446 -2.1386 45 1 4.0784 -9.4728 -2.6066 46 1 5.4192 -8.8190 -1.6367 47 1 4.3851 -10.7382 -0.4903 48 1 4.1163 -9.2431 0.4332 49 1 2.1177 -10.9264 -0.0175 50 1 1.8501 -9.1682 -0.0826 51 1 2.7302 -10.5734 -2.5976 52 1 1.0384 -10.7575 -2.0735 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582840821.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:16 Heat of formation + Delta-G solvation = 29.723037 kcal Electronic energy + Delta-G solvation = -29291.540586 eV Core-core repulsion = 25327.190107 eV Total energy + Delta-G solvation = -3964.350479 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.222 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.54442 -38.38198 -38.21550 -36.32435 -35.22173 -34.34607 -32.52641 -32.16330 -30.99024 -29.47281 -27.47310 -26.94199 -26.41605 -25.27061 -24.81106 -23.25957 -21.55624 -21.23404 -20.84544 -20.53015 -20.15986 -17.42135 -17.03311 -16.52027 -16.33458 -15.87057 -15.74259 -15.56312 -15.25005 -14.88946 -14.77641 -14.62512 -14.37622 -14.06132 -13.73791 -13.52009 -13.37318 -13.16544 -12.86809 -12.65213 -12.51703 -12.26836 -12.03535 -11.88492 -11.82425 -11.52594 -11.41258 -11.35209 -11.15497 -11.13895 -10.89061 -10.76133 -10.66274 -10.47088 -10.33454 -10.31628 -9.99712 -9.62188 -9.32866 -9.10775 -8.70693 -8.44689 -7.20850 -6.03547 -4.04312 1.51269 2.18641 2.60548 3.30968 3.38301 3.44142 3.72580 3.86670 3.95527 4.03915 4.12955 4.25720 4.41914 4.49251 4.53073 4.56461 4.67433 4.76826 4.79530 4.94081 5.00857 5.06529 5.11587 5.14555 5.22004 5.25183 5.30247 5.33788 5.44676 5.49545 5.54877 5.57342 5.58697 5.63916 5.68497 5.73608 5.92433 6.04103 6.18682 6.28022 6.37886 6.53881 6.65386 6.77143 7.00992 7.25806 7.31852 7.80099 8.02123 8.11887 8.19756 8.52697 8.54752 9.04179 9.59991 11.07452 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021928 B = 0.001829 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.594178 B =15302.723728 C =15787.665949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.529 5.529 3 C 0.192 3.808 4 C -0.504 4.504 5 H 0.065 0.935 6 C 0.053 3.947 7 N -0.900 5.900 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.285 1.285 12 C 0.024 3.976 13 C 0.118 3.882 14 H 0.093 0.907 15 O -0.535 6.535 16 C 0.027 3.973 17 N -0.676 5.676 18 C 0.145 3.855 19 C 0.181 3.819 20 N -0.293 5.293 21 N -0.295 5.295 22 C 0.177 3.823 23 N -0.455 5.455 24 C 0.106 3.894 25 C -0.141 4.141 26 C -0.125 4.125 27 C -0.125 4.125 28 C -0.035 4.035 29 H 0.047 0.953 30 H 0.075 0.925 31 H 0.008 0.992 32 H 0.028 0.972 33 H -0.011 1.011 34 H 0.260 0.740 35 H 0.070 0.930 36 H 0.028 0.972 37 H 0.368 0.632 38 H 0.078 0.922 39 H 0.042 0.958 40 H 0.350 0.650 41 H 0.089 0.911 42 H 0.067 0.933 43 H 0.096 0.904 44 H 0.095 0.905 45 H 0.079 0.921 46 H 0.088 0.912 47 H 0.072 0.928 48 H 0.072 0.928 49 H 0.080 0.920 50 H 0.068 0.932 51 H 0.091 0.909 52 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.531 -29.079 -7.313 30.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.253 5.253 3 C 0.067 3.933 4 C -0.543 4.543 5 H 0.083 0.917 6 C -0.148 4.148 7 N -0.540 5.540 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.211 1.211 12 C -0.105 4.105 13 C 0.057 3.943 14 H 0.110 0.890 15 O -0.339 6.339 16 C -0.102 4.102 17 N -0.308 5.308 18 C 0.014 3.986 19 C -0.086 4.086 20 N -0.134 5.134 21 N -0.135 5.135 22 C -0.091 4.091 23 N -0.145 5.145 24 C -0.016 4.016 25 C -0.179 4.179 26 C -0.162 4.162 27 C -0.163 4.163 28 C -0.075 4.075 29 H 0.065 0.935 30 H 0.093 0.907 31 H 0.026 0.974 32 H 0.046 0.954 33 H 0.007 0.993 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.046 0.954 37 H 0.214 0.786 38 H 0.096 0.904 39 H 0.060 0.940 40 H 0.169 0.831 41 H 0.107 0.893 42 H 0.085 0.915 43 H 0.114 0.886 44 H 0.113 0.887 45 H 0.097 0.903 46 H 0.107 0.893 47 H 0.091 0.909 48 H 0.090 0.910 49 H 0.099 0.901 50 H 0.086 0.914 51 H 0.109 0.891 52 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.350 -29.492 -7.062 30.636 hybrid contribution 0.827 1.679 -0.263 1.890 sum 5.177 -27.813 -7.325 29.224 Atomic orbital electron populations 1.22252 0.88964 0.99613 1.00400 1.62014 1.06865 1.17392 1.39016 1.19749 0.95241 0.81626 0.96652 1.21211 1.34564 0.96840 1.01666 0.91720 1.25004 0.95345 0.97380 0.97053 1.69966 1.38588 1.11397 1.34072 0.86433 0.78151 0.79276 0.83530 1.19604 1.21018 1.21149 1.22717 1.00534 0.93794 0.93501 1.21854 0.98271 0.90801 0.83355 0.88950 1.86603 1.24785 1.84908 1.37571 1.22774 1.01207 0.87432 0.98824 1.60404 1.17569 1.10580 1.42295 1.20180 1.00076 0.83924 0.94438 1.24498 0.92788 0.93565 0.97796 1.74350 1.15285 1.02546 1.21254 1.74198 1.18823 1.05631 1.14829 1.24647 0.90335 0.92075 1.02023 1.45970 1.19994 1.08810 1.39739 1.22034 0.82031 0.99621 0.97961 1.22039 1.01130 0.94353 1.00342 1.21606 0.95787 1.00657 0.98164 1.21626 0.96085 1.03329 0.95292 1.20197 1.03347 0.88009 0.95901 0.93470 0.90662 0.97356 0.95383 0.99319 0.93020 0.91147 0.95434 0.78643 0.90364 0.93988 0.83075 0.89317 0.91526 0.88568 0.88665 0.90270 0.89312 0.90924 0.90953 0.90115 0.91365 0.89101 0.88256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.72 9.14 60.06 0.55 1.27 16 2 N -0.53 -11.34 4.62 -244.37 -1.13 -12.47 16 3 C 0.19 5.00 4.72 -4.98 -0.02 4.98 16 4 C -0.50 -14.26 8.46 -34.44 -0.29 -14.55 16 5 H 0.06 1.83 7.12 -52.49 -0.37 1.46 16 6 C 0.05 1.51 5.46 -17.82 -0.10 1.42 16 7 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 8 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 9 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 C 0.02 0.41 4.62 -3.82 -0.02 0.39 16 13 C 0.12 1.61 3.02 -26.73 -0.08 1.53 16 14 H 0.09 1.35 6.55 -51.93 -0.34 1.01 16 15 O -0.54 -8.12 13.15 -35.23 -0.46 -8.58 16 16 C 0.03 0.28 5.32 -3.82 -0.02 0.26 16 17 N -0.68 -6.92 6.44 -115.06 -0.74 -7.66 16 18 C 0.15 1.30 6.04 -4.98 -0.03 1.27 16 19 C 0.18 2.03 7.55 -155.21 -1.17 0.86 16 20 N -0.29 -4.18 12.22 32.75 0.40 -3.78 16 21 N -0.29 -4.10 12.21 32.73 0.40 -3.70 16 22 C 0.18 1.81 6.93 -155.31 -1.08 0.73 16 23 N -0.45 -4.19 3.06 -110.90 -0.34 -4.53 16 24 C 0.11 0.61 6.27 -4.08 -0.03 0.59 16 25 C -0.14 -0.52 5.55 -26.77 -0.15 -0.67 16 26 C -0.12 -0.43 5.67 -27.06 -0.15 -0.58 16 27 C -0.12 -0.60 5.68 -26.87 -0.15 -0.75 16 28 C -0.04 -0.21 5.55 -27.81 -0.15 -0.37 16 29 H 0.05 0.83 6.47 -51.93 -0.34 0.49 16 30 H 0.07 1.62 6.76 -51.93 -0.35 1.27 16 31 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 32 H 0.03 0.77 7.93 -51.93 -0.41 0.36 16 33 H -0.01 -0.31 8.12 -51.93 -0.42 -0.73 16 34 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.07 1.14 7.93 -51.93 -0.41 0.73 16 36 H 0.03 0.45 8.12 -51.93 -0.42 0.03 16 37 H 0.37 4.54 9.04 45.56 0.41 4.95 16 38 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.35 3.99 8.72 -39.29 -0.34 3.65 16 41 H 0.09 0.62 7.29 -51.93 -0.38 0.24 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.10 0.59 7.82 -51.93 -0.41 0.19 16 44 H 0.10 0.44 7.29 -51.93 -0.38 0.06 16 45 H 0.08 0.34 5.69 -51.93 -0.30 0.05 16 46 H 0.09 0.20 8.14 -51.92 -0.42 -0.22 16 47 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 48 H 0.07 0.25 8.09 -51.93 -0.42 -0.17 16 49 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 50 H 0.07 0.47 7.84 -51.93 -0.41 0.06 16 51 H 0.09 0.41 6.33 -51.93 -0.33 0.08 16 52 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 406.39 15.07 6.12 6.12 Total: -1.00 -34.98 406.39 -11.06 -46.04 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -8.13 Total: 1.48 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -2.89 Total: -3.64 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: -0.67 Total: -58.17 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: -0.46 Total: -8.58 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.98 -11.06 -46.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582840821.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.761 kcal (2) G-P(sol) polarization free energy of solvation -34.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds