Wall clock time and date at job start Tue Mar 31 2020 22:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 119.99978 * 2 1 4 4 H 1.48494 * 109.47266 * 270.00195 * 3 2 1 5 5 H 1.48495 * 109.46694 * 30.00231 * 3 2 1 6 6 H 1.48495 * 109.46660 * 150.00139 * 3 2 1 7 7 C 1.38813 * 120.00022 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00221 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99624 * 0.02562 * 7 2 1 10 10 C 1.47738 * 125.82800 * 14.06264 * 9 7 2 11 11 C 1.54913 * 104.84355 * 155.83332 * 10 9 7 12 12 C 1.55148 * 101.57965 * 37.09436 * 11 10 9 13 13 C 1.47026 * 125.64330 * 194.16017 * 9 7 2 14 14 H 1.08996 * 109.88101 * 300.59475 * 13 9 7 15 15 C 1.53001 * 109.88112 * 61.60589 * 13 9 7 16 16 C 1.53004 * 109.46881 * 183.33116 * 15 13 9 17 17 C 1.52996 * 109.47052 * 174.92616 * 16 15 13 18 18 N 1.46508 * 109.47068 * 179.97438 * 17 16 15 19 19 C 1.34778 * 119.99822 * 179.97438 * 18 17 16 20 20 O 1.21283 * 119.99914 * 0.02562 * 19 18 17 21 21 C 1.50694 * 119.99684 * 179.97438 * 19 18 17 22 22 C 1.53001 * 109.47281 * 180.02562 * 21 19 18 23 23 C 1.52994 * 109.47660 * 180.02562 * 22 21 19 24 24 N 1.46897 * 109.47720 * 180.02562 * 23 22 21 25 25 C 1.48528 * 110.99865 * 52.60048 * 24 23 22 26 26 C 1.54942 * 103.22647 * 159.72773 * 25 24 23 27 27 C 1.54597 * 102.91722 * 322.58542 * 26 25 24 28 28 C 1.47897 * 111.00565 * 170.00234 * 24 23 22 29 29 H 0.97005 * 120.00199 * 0.02562 * 1 2 3 30 30 H 1.09004 * 110.29046 * 37.03019 * 10 9 7 31 31 H 1.09001 * 110.43589 * 274.71605 * 10 9 7 32 32 H 1.09007 * 111.00172 * 279.02404 * 11 10 9 33 33 H 1.08997 * 111.03539 * 155.18631 * 11 10 9 34 34 H 1.09007 * 110.72067 * 206.13460 * 12 11 10 35 35 H 1.09002 * 110.71997 * 82.86212 * 12 11 10 36 36 H 1.09003 * 109.47033 * 63.33273 * 15 13 9 37 37 H 1.08999 * 109.47114 * 303.32788 * 15 13 9 38 38 H 1.08993 * 109.47140 * 54.92058 * 16 15 13 39 39 H 1.09002 * 109.46976 * 294.92145 * 16 15 13 40 40 H 1.08995 * 109.47145 * 59.99986 * 17 16 15 41 41 H 1.09002 * 109.46846 * 299.99609 * 17 16 15 42 42 H 0.96995 * 119.99851 * 0.02562 * 18 17 16 43 43 H 1.09008 * 109.47098 * 60.00848 * 21 19 18 44 44 H 1.08998 * 109.47497 * 300.00933 * 21 19 18 45 45 H 1.09008 * 109.46465 * 60.00335 * 22 21 19 46 46 H 1.08998 * 109.47514 * 300.00797 * 22 21 19 47 47 H 1.09006 * 109.47049 * 59.99958 * 23 22 21 48 48 H 1.08998 * 109.47150 * 300.00827 * 23 22 21 49 49 H 1.08996 * 110.67105 * 278.15987 * 25 24 23 50 50 H 1.09001 * 110.66823 * 41.29546 * 25 24 23 51 51 H 1.08995 * 110.72551 * 204.23290 * 26 25 24 52 52 H 1.08992 * 110.72623 * 80.94512 * 26 25 24 53 53 H 1.08999 * 110.31173 * 263.04194 * 27 26 25 54 54 H 1.08999 * 110.30424 * 140.87695 * 27 26 25 55 55 H 1.09003 * 109.91405 * 333.51183 * 28 24 23 56 56 H 1.08999 * 109.91884 * 94.60147 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0016 10 6 -0.1130 -2.5557 -0.2933 11 6 -0.2524 -4.0221 -0.7729 12 6 0.7679 -4.7477 0.1433 13 6 1.9002 -3.7095 0.2900 14 1 2.6996 -3.9303 -0.4172 15 6 2.4478 -3.7350 1.7185 16 6 3.1170 -5.0851 1.9840 17 6 3.7744 -5.0654 3.3654 18 7 4.4147 -6.3584 3.6200 19 6 5.0613 -6.5728 4.7830 20 8 5.1126 -5.6956 5.6189 21 6 5.7194 -7.9029 5.0450 22 6 6.3769 -7.8833 6.4264 23 6 7.0456 -9.2334 6.6922 24 7 7.6764 -9.2148 8.0187 25 6 6.7086 -8.7900 9.0623 26 6 7.3427 -9.3230 10.3718 27 6 7.9456 -10.6786 9.9370 28 6 8.1247 -10.5684 8.4115 29 1 -0.4851 0.8401 -0.0004 30 1 -0.4217 -1.8681 -1.0808 31 1 -0.7055 -2.3931 0.6071 32 1 0.0272 -4.1183 -1.8221 33 1 -1.2628 -4.3945 -0.6043 34 1 1.1368 -5.6559 -0.3336 35 1 0.3235 -4.9732 1.1128 36 1 1.6295 -3.5901 2.4239 37 1 3.1794 -2.9364 1.8415 38 1 3.8753 -5.2706 1.2234 39 1 2.3671 -5.8753 1.9498 40 1 3.0161 -4.8800 4.1261 41 1 4.5244 -4.2752 3.3997 42 1 4.3740 -7.0597 2.9512 43 1 6.4773 -8.0894 4.2841 44 1 4.9688 -8.6926 5.0113 45 1 5.6186 -7.6970 7.1870 46 1 7.1273 -7.0935 6.4604 47 1 7.8039 -9.4194 5.9315 48 1 6.2954 -10.0234 6.6580 49 1 6.6249 -7.7036 9.0900 50 1 5.7341 -9.2479 8.8926 51 1 6.5811 -9.4677 11.1380 52 1 8.1232 -8.6491 10.7245 53 1 7.2619 -11.4920 10.1798 54 1 8.9095 -10.8364 10.4207 55 1 7.5159 -11.3211 7.9107 56 1 9.1735 -10.7034 8.1471 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317435607.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:33 Heat of formation + Delta-G solvation = -57.612894 kcal Electronic energy + Delta-G solvation = -28551.767126 eV Core-core repulsion = 24687.169820 eV Total energy + Delta-G solvation = -3864.597306 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 337.247 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.82821 -39.84409 -39.44348 -36.73592 -35.31747 -34.68242 -33.65416 -31.96491 -31.23498 -29.88555 -29.51025 -27.27533 -26.54431 -25.32193 -23.43325 -22.68784 -21.85728 -21.77366 -21.53117 -21.02685 -20.63838 -18.71679 -18.04137 -17.23271 -17.02274 -16.98583 -16.78670 -16.54445 -16.17638 -15.99733 -15.65371 -15.32233 -14.94993 -14.66469 -14.37458 -14.02513 -13.96706 -13.71789 -13.69176 -13.53972 -13.29743 -13.12542 -13.00397 -12.79827 -12.71279 -12.60229 -12.36919 -12.25280 -12.24161 -12.10860 -12.01538 -11.96208 -11.82842 -11.66973 -11.62648 -11.54047 -11.41497 -11.30867 -11.16210 -10.86382 -10.65493 -10.08787 -9.36471 -8.77938 -7.85699 -5.21017 1.43348 1.44846 1.53283 1.67275 2.21503 2.49408 3.05839 3.32925 3.65752 3.71665 3.76448 3.85032 3.96717 4.00441 4.02344 4.06379 4.16505 4.20668 4.26105 4.34226 4.35459 4.43978 4.48568 4.53236 4.61562 4.63438 4.70063 4.73582 4.74513 4.82774 4.82898 4.87590 4.91214 4.96392 5.00232 5.04655 5.06805 5.12517 5.14723 5.23437 5.24524 5.28420 5.32856 5.34985 5.46547 5.50766 5.53338 5.68137 5.70958 5.79795 5.94703 6.12228 6.27506 6.61386 7.12452 7.31509 7.82300 8.49892 9.25894 Molecular weight = 337.25amu Principal moments of inertia in cm(-1) A = 0.019806 B = 0.001521 C = 0.001450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.385038 B =18408.743697 C =19311.283553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.066 4.066 3 Si 0.970 3.030 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.272 1.272 7 C -0.231 4.231 8 H 0.075 0.925 9 N -0.620 5.620 10 C 0.173 3.827 11 C -0.137 4.137 12 C -0.110 4.110 13 C 0.151 3.849 14 H 0.036 0.964 15 C -0.113 4.113 16 C -0.106 4.106 17 C 0.124 3.876 18 N -0.716 5.716 19 C 0.502 3.498 20 O -0.596 6.596 21 C -0.127 4.127 22 C -0.099 4.099 23 C 0.052 3.948 24 N -0.539 5.539 25 C 0.031 3.969 26 C -0.126 4.126 27 C -0.129 4.129 28 C 0.032 3.968 29 H 0.245 0.755 30 H 0.030 0.970 31 H -0.009 1.009 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.071 0.929 36 H 0.039 0.961 37 H 0.034 0.966 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.048 0.952 41 H 0.044 0.956 42 H 0.419 0.581 43 H 0.122 0.878 44 H 0.122 0.878 45 H 0.053 0.947 46 H 0.052 0.948 47 H 0.087 0.913 48 H 0.049 0.951 49 H 0.068 0.932 50 H 0.046 0.954 51 H 0.081 0.919 52 H 0.068 0.932 53 H 0.076 0.924 54 H 0.078 0.922 55 H 0.052 0.948 56 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.978 -28.679 12.663 33.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.259 4.259 3 Si 0.799 3.201 4 H -0.211 1.211 5 H -0.223 1.223 6 H -0.197 1.197 7 C -0.360 4.360 8 H 0.093 0.907 9 N -0.345 5.345 10 C 0.048 3.952 11 C -0.175 4.175 12 C -0.148 4.148 13 C 0.045 3.955 14 H 0.054 0.946 15 C -0.154 4.154 16 C -0.144 4.144 17 C -0.001 4.001 18 N -0.369 5.369 19 C 0.290 3.710 20 O -0.477 6.477 21 C -0.167 4.167 22 C -0.138 4.138 23 C -0.076 4.076 24 N -0.263 5.263 25 C -0.097 4.097 26 C -0.164 4.164 27 C -0.167 4.167 28 C -0.095 4.095 29 H 0.055 0.945 30 H 0.048 0.952 31 H 0.009 0.991 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.117 0.883 35 H 0.089 0.911 36 H 0.058 0.942 37 H 0.053 0.947 38 H 0.101 0.899 39 H 0.110 0.890 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.257 0.743 43 H 0.140 0.860 44 H 0.140 0.860 45 H 0.072 0.928 46 H 0.071 0.929 47 H 0.106 0.894 48 H 0.067 0.933 49 H 0.087 0.913 50 H 0.065 0.935 51 H 0.099 0.901 52 H 0.087 0.913 53 H 0.094 0.906 54 H 0.097 0.903 55 H 0.070 0.930 56 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 13.415 -27.489 13.182 33.307 hybrid contribution -0.638 1.174 -0.160 1.346 sum 12.777 -26.315 13.022 32.020 Atomic orbital electron populations 1.70148 1.06281 1.25113 1.58301 1.25657 0.96495 1.00904 1.02826 0.85200 0.77709 0.79713 0.77504 1.21144 1.22262 1.19677 1.19292 0.90670 0.83792 1.42253 0.90681 1.44937 1.06294 1.02480 1.80751 1.21277 0.84586 0.93302 0.96042 1.22877 0.99754 0.95618 0.99290 1.22583 0.95097 0.97305 0.99808 1.21228 0.95205 0.85448 0.93604 0.94634 1.21834 0.98932 0.96561 0.98024 1.21621 1.00431 0.97610 0.94779 1.21209 0.96008 0.85323 0.97538 1.45957 1.55040 1.16637 1.19242 1.21484 0.77831 0.90728 0.80947 1.90711 1.61818 1.48096 1.47034 1.21634 1.02122 0.93386 0.99543 1.21285 0.99304 0.97353 0.95846 1.22301 0.97807 0.96057 0.91400 1.64768 1.35331 1.23927 1.02303 1.23234 0.94204 1.00490 0.91743 1.22507 1.00385 0.96898 0.96582 1.22409 1.02044 0.97530 0.94746 1.22934 1.01475 0.89094 0.96007 0.94533 0.95165 0.99123 0.91747 0.90057 0.88341 0.91081 0.94210 0.94702 0.89947 0.89042 0.93357 0.93784 0.74325 0.85968 0.86042 0.92849 0.92887 0.89421 0.93328 0.91342 0.93544 0.90069 0.91290 0.90566 0.90340 0.92989 0.90168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.40 10.58 21.65 0.23 -58.17 16 2 C -0.07 -3.83 5.47 84.86 0.46 -3.36 16 3 Si 0.97 47.06 29.55 68.60 2.03 49.09 16 4 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 5 H -0.30 -14.50 7.11 99.48 0.71 -13.80 16 6 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 7 C -0.23 -13.06 9.75 84.03 0.82 -12.24 16 8 H 0.08 4.12 7.83 -2.91 -0.02 4.09 16 9 N -0.62 -31.67 3.14 -667.44 -2.09 -33.76 16 10 C 0.17 8.60 5.44 86.80 0.47 9.07 16 11 C -0.14 -4.84 7.08 31.98 0.23 -4.62 16 12 C -0.11 -3.32 5.61 31.78 0.18 -3.14 16 13 C 0.15 5.79 3.18 45.34 0.14 5.93 16 14 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 15 C -0.11 -3.96 4.69 30.60 0.14 -3.82 16 16 C -0.11 -2.45 5.07 30.59 0.16 -2.30 16 17 C 0.12 3.12 5.67 86.38 0.49 3.61 16 18 N -0.72 -13.26 5.56 -463.05 -2.57 -15.84 16 19 C 0.50 11.06 7.83 87.65 0.69 11.75 16 20 O -0.60 -19.86 15.98 -3.04 -0.05 -19.91 16 21 C -0.13 -1.53 5.70 29.85 0.17 -1.36 16 22 C -0.10 -1.63 4.16 30.59 0.13 -1.50 16 23 C 0.05 0.65 5.03 86.30 0.43 1.08 16 24 N -0.54 -8.17 5.40 -883.06 -4.76 -12.93 16 25 C 0.03 0.47 5.10 86.65 0.44 0.91 16 26 C -0.13 -1.48 7.06 31.80 0.22 -1.26 16 27 C -0.13 -1.23 6.93 31.47 0.22 -1.01 16 28 C 0.03 0.36 6.69 86.44 0.58 0.94 16 29 H 0.25 14.72 8.31 -92.70 -0.77 13.95 16 30 H 0.03 1.70 6.90 -2.38 -0.02 1.69 16 31 H -0.01 -0.51 8.08 -2.39 -0.02 -0.53 16 32 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 33 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.10 2.21 8.14 -2.38 -0.02 2.19 16 35 H 0.07 2.03 7.79 -2.39 -0.02 2.01 16 36 H 0.04 1.52 8.07 -2.39 -0.02 1.50 16 37 H 0.03 1.40 7.89 -2.39 -0.02 1.38 16 38 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.09 1.69 7.57 -2.39 -0.02 1.67 16 40 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.42 4.36 8.47 -92.71 -0.79 3.57 16 43 H 0.12 0.86 8.14 -2.38 -0.02 0.85 16 44 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.05 1.06 6.75 -2.38 -0.02 1.04 16 46 H 0.05 1.15 8.10 -2.39 -0.02 1.13 16 47 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 48 H 0.05 0.48 7.81 -2.39 -0.02 0.46 16 49 H 0.07 1.24 7.66 -2.39 -0.02 1.22 16 50 H 0.05 0.66 8.00 -2.39 -0.02 0.65 16 51 H 0.08 0.77 8.14 -2.39 -0.02 0.76 16 52 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 53 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 54 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 55 H 0.05 0.49 7.57 -2.39 -0.02 0.47 16 56 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -77.14 430.94 -1.22 -78.36 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: 0.03 Total: 14.46 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: 5.97 Total: -1.31 kcal Atomic # 7 Polarization: -111.50 SS G_CDS: -9.20 Total: -120.70 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -0.05 Total: -19.91 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Total: -77.14 -1.22 -78.36 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317435607.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.751 kcal (2) G-P(sol) polarization free energy of solvation -77.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds