Wall clock time and date at job start Tue Mar 31 2020 22:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40087 * 126.03550 * 2 1 4 4 C 1.30837 * 108.20490 * 180.23321 * 3 2 1 5 5 C 1.39874 * 108.20228 * 359.77976 * 4 3 2 6 6 C 1.50701 * 126.04024 * 180.02562 * 5 4 3 7 7 N 1.46900 * 109.47347 * 258.34358 * 6 5 4 8 8 C 1.34953 * 126.04030 * 179.85050 * 2 1 3 9 9 C 1.50696 * 126.12586 * 0.03069 * 8 2 1 10 10 N 1.46902 * 109.47537 * 263.47580 * 9 8 2 11 11 C 1.46897 * 110.99923 * 71.92820 * 10 9 8 12 12 C 1.50695 * 109.47363 * 63.59977 * 11 10 9 13 13 H 1.08002 * 120.00141 * 3.37496 * 12 11 10 14 14 C 1.37876 * 120.00301 * 183.37013 * 12 11 10 15 15 N 1.31513 * 119.99664 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00041 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47060 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47111 * 120.00131 * 16 14 12 19 19 H 1.48502 * 109.46885 * 239.99494 * 16 14 12 20 20 C 1.46900 * 110.99973 * 195.88704 * 10 9 8 21 21 C 1.52996 * 109.47039 * 163.73536 * 20 10 9 22 22 N 1.46896 * 109.47437 * 176.65973 * 21 20 10 23 23 C 1.47017 * 110.99722 * 293.63390 * 22 21 20 24 24 C 1.53101 * 109.25366 * 177.60479 * 23 22 21 25 25 O 1.43018 * 109.26130 * 56.84912 * 24 23 22 26 26 C 1.43010 * 113.73498 * 301.32942 * 25 24 23 27 27 C 1.47013 * 111.00432 * 169.99557 * 22 21 20 28 28 H 1.09003 * 109.46823 * 270.14911 * 1 2 3 29 29 H 1.08993 * 109.47341 * 30.15103 * 1 2 3 30 30 H 1.08998 * 109.46662 * 150.15177 * 1 2 3 31 31 H 1.08005 * 125.89977 * 179.81878 * 4 3 2 32 32 H 1.09006 * 109.46993 * 18.34026 * 6 5 4 33 33 H 1.08994 * 109.47312 * 138.33743 * 6 5 4 34 34 H 1.00895 * 110.99871 * 184.76655 * 7 6 5 35 35 H 1.00903 * 110.99724 * 308.71431 * 7 6 5 36 36 H 1.08996 * 109.46996 * 143.47006 * 9 8 2 37 37 H 1.09010 * 109.46968 * 23.47607 * 9 8 2 38 38 H 1.09007 * 109.46915 * 183.60309 * 11 10 9 39 39 H 1.08998 * 109.47409 * 303.59634 * 11 10 9 40 40 H 0.97004 * 120.00117 * 179.97438 * 15 14 12 41 41 H 1.09005 * 109.46727 * 283.73045 * 20 10 9 42 42 H 1.08995 * 109.47521 * 43.73114 * 20 10 9 43 43 H 1.09005 * 109.46829 * 296.65960 * 21 20 10 44 44 H 1.09001 * 109.47339 * 56.65645 * 21 20 10 45 45 H 1.08993 * 109.50431 * 297.53521 * 23 22 21 46 46 H 1.08997 * 109.50427 * 57.67039 * 23 22 21 47 47 H 1.09000 * 109.51056 * 296.90994 * 24 23 22 48 48 H 1.08999 * 109.53867 * 176.80766 * 24 23 22 49 49 H 1.09004 * 109.50830 * 298.73295 * 26 25 24 50 50 H 1.09001 * 109.53935 * 178.62891 * 26 25 24 51 51 H 1.08995 * 109.50745 * 302.32675 * 27 22 21 52 52 H 1.08994 * 109.50319 * 62.41601 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5346 0.7322 -0.0051 5 6 3.5437 -0.6665 -0.0033 6 6 4.7680 -1.5452 -0.0071 7 7 4.9972 -2.0598 -1.3638 8 6 2.2590 -1.0912 0.0028 9 6 1.7975 -2.5258 0.0059 10 7 1.7967 -3.0371 1.3831 11 6 0.7014 -2.4460 2.1634 12 6 -0.6198 -2.8633 1.5707 13 1 -0.6449 -3.5470 0.7350 14 6 -1.7966 -2.3723 2.0952 15 7 -1.7660 -1.5402 3.1132 16 14 -3.4343 -2.8901 1.3609 17 1 -3.1971 -3.8276 0.2340 18 1 -4.2521 -3.5642 2.4011 19 1 -4.1555 -1.6907 0.8645 20 6 1.7233 -4.5041 1.4000 21 6 2.1270 -5.0191 2.7829 22 7 1.9770 -6.4798 2.8246 23 6 0.5632 -6.8676 2.7133 24 6 0.4582 -8.3949 2.7008 25 8 1.0723 -8.9197 3.8810 26 6 2.4498 -8.5618 4.0209 27 6 2.5751 -7.0363 4.0468 28 1 -0.3633 0.0027 1.0277 29 1 -0.3633 0.8886 -0.5161 30 1 -0.3632 -0.8913 -0.5115 31 1 4.4054 1.3711 -0.0092 32 1 5.6333 -0.9642 0.3120 33 1 4.6183 -2.3799 0.6776 34 1 5.7661 -2.7130 -1.3777 35 1 4.1593 -2.4797 -1.7376 36 1 2.4726 -3.1259 -0.6041 37 1 0.7890 -2.5839 -0.4038 38 1 0.7623 -2.7923 3.1952 39 1 0.7834 -1.3594 2.1395 40 1 -2.5939 -1.1945 3.4821 41 1 0.7036 -4.8194 1.1783 42 1 2.4006 -4.9105 0.6490 43 1 3.1660 -4.7547 2.9800 44 1 1.4870 -4.5664 3.5403 45 1 0.0092 -6.4716 3.5643 46 1 0.1476 -6.4665 1.7889 47 1 0.9669 -8.7876 1.8204 48 1 -0.5914 -8.6879 2.6755 49 1 3.0165 -8.9593 3.1789 50 1 2.8412 -8.9751 4.9505 51 1 3.6279 -6.7584 4.0959 52 1 2.0537 -6.6424 4.9191 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580002184.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:19 Heat of formation + Delta-G solvation = 49.856661 kcal Electronic energy + Delta-G solvation = -31330.479251 eV Core-core repulsion = 27367.001831 eV Total energy + Delta-G solvation = -3963.477420 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.222 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.81241 -39.46768 -37.29394 -35.37034 -34.68132 -32.70231 -32.38284 -31.16397 -30.47227 -29.04103 -27.36018 -26.56064 -25.93149 -24.47179 -23.90899 -23.41309 -22.40765 -20.44213 -20.27370 -19.77505 -18.59356 -16.83004 -16.47799 -16.10758 -16.05967 -15.49690 -15.31579 -15.01454 -14.99739 -14.83775 -14.57991 -14.24309 -14.06082 -13.96866 -13.69786 -13.38791 -12.96172 -12.83571 -12.68755 -12.30273 -12.26075 -11.95638 -11.90519 -11.60568 -11.38323 -11.32820 -11.20716 -11.14361 -11.00325 -10.83236 -10.60432 -10.42808 -10.27804 -10.13626 -10.05540 -9.78960 -9.59884 -8.69124 -8.64183 -8.49451 -8.19656 -7.74925 -7.38148 -6.22904 -4.33599 2.44382 3.09595 3.14446 3.20600 3.21521 3.26330 3.80416 3.97589 4.20851 4.87156 4.96146 5.03110 5.06838 5.11304 5.12372 5.17318 5.21583 5.31371 5.35395 5.52156 5.56443 5.60044 5.61762 5.67252 5.77091 5.81487 5.84188 5.84396 5.91549 6.00979 6.07220 6.10657 6.17568 6.19677 6.39540 6.41215 6.52614 6.57106 6.73936 6.97879 7.09497 7.18309 7.20419 7.20876 7.33546 7.35220 7.61514 7.66190 7.70686 7.80733 8.01844 8.08131 8.30805 8.76869 9.33549 10.81050 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008762 B = 0.004522 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3194.762694 B = 6190.548165 C = 8707.734577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.353 5.353 3 N -0.311 5.311 4 C 0.050 3.950 5 C -0.240 4.240 6 C 0.146 3.854 7 N -0.849 5.849 8 C 0.125 3.875 9 C 0.122 3.878 10 N -0.533 5.533 11 C 0.184 3.816 12 C -0.551 4.551 13 H 0.057 0.943 14 C 0.071 3.929 15 N -0.883 5.883 16 Si 0.878 3.122 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.282 1.282 20 C 0.066 3.934 21 C 0.066 3.934 22 N -0.537 5.537 23 C 0.016 3.984 24 C 0.065 3.935 25 O -0.390 6.390 26 C 0.066 3.934 27 C 0.019 3.981 28 H 0.096 0.904 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.173 0.827 32 H 0.069 0.931 33 H 0.039 0.961 34 H 0.333 0.667 35 H 0.336 0.664 36 H 0.071 0.929 37 H 0.058 0.942 38 H 0.028 0.972 39 H 0.036 0.964 40 H 0.264 0.736 41 H 0.052 0.948 42 H 0.056 0.944 43 H 0.072 0.928 44 H 0.045 0.955 45 H 0.045 0.955 46 H 0.093 0.907 47 H 0.056 0.944 48 H 0.095 0.905 49 H 0.056 0.944 50 H 0.093 0.907 51 H 0.083 0.917 52 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.775 -8.201 -3.363 12.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.133 5.133 3 N -0.133 5.133 4 C -0.135 4.135 5 C -0.252 4.252 6 C 0.016 3.984 7 N -0.378 5.378 8 C -0.006 4.006 9 C -0.008 4.008 10 N -0.257 5.257 11 C 0.058 3.942 12 C -0.590 4.590 13 H 0.075 0.925 14 C -0.132 4.132 15 N -0.521 5.521 16 Si 0.705 3.295 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.208 1.208 20 C -0.062 4.062 21 C -0.062 4.062 22 N -0.262 5.262 23 C -0.113 4.113 24 C -0.012 4.012 25 O -0.308 6.308 26 C -0.011 4.011 27 C -0.110 4.110 28 H 0.114 0.886 29 H 0.089 0.911 30 H 0.107 0.893 31 H 0.190 0.810 32 H 0.087 0.913 33 H 0.057 0.943 34 H 0.145 0.855 35 H 0.149 0.851 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.046 0.954 39 H 0.054 0.946 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.090 0.910 44 H 0.063 0.937 45 H 0.064 0.936 46 H 0.111 0.889 47 H 0.075 0.925 48 H 0.113 0.887 49 H 0.075 0.925 50 H 0.111 0.889 51 H 0.101 0.899 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 8.447 -6.465 -3.456 11.185 hybrid contribution -1.936 -1.369 0.362 2.399 sum 6.511 -7.835 -3.094 10.646 Atomic orbital electron populations 1.21998 0.73554 1.02847 1.05426 1.48410 1.06714 1.03073 1.55145 1.77266 1.01584 1.08730 1.25694 1.23523 0.94981 0.94404 1.00608 1.19482 0.93313 0.93616 1.18835 1.19857 0.93989 0.95898 0.88693 1.58885 1.10651 1.44553 1.23722 1.20730 0.90392 0.90285 0.99179 1.20457 1.00160 0.88017 0.92197 1.62363 1.48160 1.05099 1.10128 1.19863 0.85545 0.95644 0.93149 1.21654 0.91943 1.28375 1.17001 0.92492 1.24898 0.98800 0.94775 0.94749 1.69949 1.27675 1.31014 1.23421 0.86761 0.84567 0.78751 0.79375 1.19755 1.20854 1.20766 1.21866 1.00357 0.88271 0.95716 1.22001 1.01214 0.84706 0.98229 1.62177 1.15529 1.12159 1.36368 1.22818 0.89397 0.95946 1.03103 1.22690 0.98253 0.92612 0.87666 1.87955 1.24478 1.74467 1.43912 1.22627 0.83091 0.93636 1.01791 1.22729 1.00573 0.95814 0.91889 0.88558 0.91058 0.89317 0.80991 0.91303 0.94272 0.85534 0.85127 0.91057 0.92371 0.95351 0.94631 0.92654 0.92982 0.92531 0.90979 0.93689 0.93624 0.88926 0.92542 0.88727 0.92522 0.88873 0.89883 0.94066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.91 10.12 59.85 0.61 2.52 16 2 N -0.35 -6.84 3.80 -63.89 -0.24 -7.08 16 3 N -0.31 -6.06 12.58 30.63 0.39 -5.67 16 4 C 0.05 0.86 11.96 -17.36 -0.21 0.65 16 5 C -0.24 -4.04 5.56 -105.05 -0.58 -4.62 16 6 C 0.15 2.04 6.91 -4.98 -0.03 2.00 16 7 N -0.85 -10.40 9.65 -11.41 -0.11 -10.51 16 8 C 0.12 2.27 5.64 -82.27 -0.46 1.80 16 9 C 0.12 2.10 4.86 -4.98 -0.02 2.08 16 10 N -0.53 -9.91 4.61 -237.52 -1.10 -11.00 16 11 C 0.18 4.15 4.70 -4.98 -0.02 4.13 16 12 C -0.55 -12.84 6.75 -34.44 -0.23 -13.07 16 13 H 0.06 1.33 6.01 -52.49 -0.32 1.01 16 14 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 15 N -0.88 -23.37 13.29 55.43 0.74 -22.64 16 16 Si 0.88 19.27 29.54 -169.99 -5.02 14.25 16 17 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 20 C 0.07 1.11 4.81 -3.83 -0.02 1.10 16 21 C 0.07 1.06 5.06 -3.83 -0.02 1.04 16 22 N -0.54 -7.68 4.73 -234.32 -1.11 -8.79 16 23 C 0.02 0.23 5.44 -3.71 -0.02 0.21 16 24 C 0.06 0.81 7.01 37.21 0.26 1.07 16 25 O -0.39 -5.31 10.83 -35.23 -0.38 -5.69 16 26 C 0.07 0.74 7.01 37.21 0.26 1.00 16 27 C 0.02 0.23 5.65 -3.71 -0.02 0.21 16 28 H 0.10 2.08 7.28 -51.93 -0.38 1.70 16 29 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 30 H 0.09 1.60 6.87 -51.93 -0.36 1.24 16 31 H 0.17 2.38 8.06 -52.48 -0.42 1.95 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.33 3.30 9.08 -39.29 -0.36 2.94 16 35 H 0.34 4.16 7.91 -39.29 -0.31 3.85 16 36 H 0.07 1.07 6.62 -51.93 -0.34 0.73 16 37 H 0.06 1.09 5.27 -51.92 -0.27 0.81 16 38 H 0.03 0.72 6.65 -51.93 -0.35 0.38 16 39 H 0.04 0.90 5.67 -51.93 -0.29 0.61 16 40 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 41 H 0.05 0.97 4.36 -51.93 -0.23 0.74 16 42 H 0.06 0.87 7.72 -51.93 -0.40 0.47 16 43 H 0.07 1.12 8.04 -51.93 -0.42 0.70 16 44 H 0.04 0.86 6.63 -51.93 -0.34 0.51 16 45 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.09 1.40 6.32 -51.93 -0.33 1.08 16 47 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 48 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 49 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 50 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 51 H 0.08 0.91 8.09 -51.93 -0.42 0.49 16 52 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 399.42 15.07 6.02 6.02 Total: -1.00 -27.73 399.42 -9.91 -37.64 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: -8.47 Total: 11.70 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: -0.62 Total: 1.79 kcal Atomic # 7 Polarization: -64.27 SS G_CDS: -1.43 Total: -65.70 kcal Atomic # 8 Polarization: -5.31 SS G_CDS: -0.38 Total: -5.69 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.02 Total: 14.25 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -27.73 -9.91 -37.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580002184.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.495 kcal (2) G-P(sol) polarization free energy of solvation -27.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds