Wall clock time and date at job start Tue Mar 31 2020 19:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47136 * 2 1 4 4 H 1.08994 * 109.46981 * 304.95148 * 3 2 1 5 5 C 1.50693 * 109.46996 * 64.95264 * 3 2 1 6 6 N 1.30297 * 126.34526 * 59.69037 * 5 3 2 7 7 N 1.28535 * 110.05251 * 179.82117 * 6 5 3 8 8 C 1.31219 * 109.85944 * 0.45218 * 7 6 5 9 9 N 1.38582 * 126.47371 * 179.69518 * 8 7 6 10 10 C 1.46957 * 110.99905 * 67.27443 * 9 8 7 11 11 C 1.53050 * 109.36465 * 176.81073 * 10 9 8 12 12 N 1.46962 * 109.36046 * 58.40338 * 11 10 9 13 13 C 1.46898 * 110.99746 * 176.80901 * 12 11 10 14 14 C 1.50706 * 109.47125 * 59.30526 * 13 12 11 15 15 H 1.08006 * 119.99602 * 4.35401 * 14 13 12 16 16 C 1.37872 * 120.00399 * 184.34653 * 14 13 12 17 17 N 1.31525 * 119.99685 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00123 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47278 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47162 * 120.00468 * 18 16 14 21 21 H 1.48505 * 109.46760 * 239.99957 * 18 16 14 22 22 C 1.46949 * 110.88083 * 300.67963 * 12 11 10 23 23 C 1.46960 * 110.99716 * 303.48122 * 9 8 7 24 24 N 1.36458 * 107.05266 * 359.72828 * 8 7 6 25 25 C 1.46491 * 127.13362 * 180.02562 * 24 8 7 26 26 C 1.52999 * 109.47247 * 184.95228 * 3 2 1 27 27 H 1.08997 * 109.47350 * 303.07719 * 26 3 2 28 28 C 1.52996 * 109.47426 * 183.06989 * 26 3 2 29 29 O 1.42904 * 109.46921 * 63.07128 * 26 3 2 30 30 H 1.09000 * 109.46955 * 174.02169 * 1 2 3 31 31 H 1.09004 * 109.47170 * 294.01912 * 1 2 3 32 32 H 1.09005 * 109.47268 * 54.02494 * 1 2 3 33 33 H 1.09007 * 109.46914 * 240.00322 * 2 1 3 34 34 H 1.09003 * 109.47172 * 120.00565 * 2 1 3 35 35 H 1.09003 * 109.49050 * 296.78464 * 10 9 8 36 36 H 1.09006 * 109.48637 * 56.84736 * 10 9 8 37 37 H 1.08997 * 109.49173 * 298.43760 * 11 10 9 38 38 H 1.08996 * 109.49287 * 178.36893 * 11 10 9 39 39 H 1.09005 * 109.47271 * 179.30113 * 13 12 11 40 40 H 1.09000 * 109.47480 * 299.30916 * 13 12 11 41 41 H 0.97001 * 119.99602 * 179.97438 * 17 16 14 42 42 H 1.09004 * 109.49025 * 299.35541 * 22 12 11 43 43 H 1.09008 * 109.49070 * 179.29193 * 22 12 11 44 44 H 1.09004 * 109.48439 * 303.15099 * 23 9 8 45 45 H 1.08994 * 109.49373 * 63.19508 * 23 9 8 46 46 H 1.09006 * 109.47326 * 273.58230 * 25 24 8 47 47 H 1.08998 * 109.47339 * 33.58526 * 25 24 8 48 48 H 1.08995 * 109.46903 * 153.58538 * 25 24 8 49 49 H 1.09004 * 109.46608 * 60.00360 * 28 26 3 50 50 H 1.08995 * 109.47183 * 180.02562 * 28 26 3 51 51 H 1.08997 * 109.47238 * 300.00159 * 28 26 3 52 52 H 0.96699 * 114.00024 * 294.53640 * 29 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6061 1.9812 -0.8423 5 6 1.6403 2.1165 1.2872 6 7 1.9725 1.7425 2.4903 7 7 1.4639 2.5437 3.3571 8 6 0.7663 3.4740 2.7490 9 7 0.0687 4.5078 3.3531 10 6 0.9872 5.4575 3.9965 11 6 0.1850 6.6223 4.5815 12 7 -0.7934 6.1034 5.5476 13 6 -1.5329 7.1993 6.1881 14 6 -2.2519 8.0028 5.1352 15 1 -2.2257 7.6863 4.1029 16 6 -2.9434 9.1417 5.4897 17 7 -2.9750 9.5272 6.7468 18 14 -3.8352 10.1372 4.1847 19 1 -3.6473 9.4960 2.8586 20 1 -5.2838 10.1910 4.5072 21 1 -3.2840 11.5157 4.1512 22 6 -1.7118 5.1537 4.9042 23 6 -0.9096 3.9889 4.3193 24 7 0.8570 3.2307 1.4093 25 6 0.2431 4.0032 0.3266 26 6 3.5649 1.4443 -0.1245 27 1 3.9965 0.8594 0.6876 28 6 4.0812 2.8825 -0.0476 29 8 3.9412 0.8695 -1.3776 30 1 -0.3633 -1.0221 -0.1070 31 1 -0.3634 0.4183 0.9387 32 1 -0.3634 0.6037 -0.8317 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8900 35 1 1.5311 4.9531 4.7952 36 1 1.6937 5.8371 3.2583 37 1 -0.3374 7.1433 3.7792 38 1 0.8613 7.3134 5.0845 39 1 -2.2587 6.7870 6.8891 40 1 -0.8358 7.8437 6.7237 41 1 -3.4611 10.3287 6.9961 42 1 -2.2557 5.6581 4.1055 43 1 -2.4184 4.7741 5.6424 44 1 -1.5860 3.2978 3.8163 45 1 -0.3873 3.4675 5.1213 46 1 -0.7706 3.6423 0.1522 47 1 0.2108 5.0566 0.6049 48 1 0.8321 3.8855 -0.5829 49 1 3.7942 3.3208 0.9082 50 1 5.1675 2.8838 -0.1368 51 1 3.6497 3.4674 -0.8598 52 1 3.7199 -0.0680 -1.4626 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646690921.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:51 Heat of formation + Delta-G solvation = 37.204844 kcal Electronic energy + Delta-G solvation = -30838.000699 eV Core-core repulsion = 26873.974656 eV Total energy + Delta-G solvation = -3964.026044 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.222 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.10642 -39.02553 -38.48179 -35.44883 -35.23327 -34.45780 -32.44828 -31.74974 -30.52750 -29.68835 -28.07377 -27.35435 -26.76525 -25.00323 -23.16543 -23.05668 -22.38557 -22.05434 -21.04102 -20.13363 -19.00814 -17.99311 -17.42370 -16.67722 -16.46541 -16.15392 -15.71436 -15.17572 -14.87103 -14.53175 -14.35054 -14.27793 -14.15168 -13.64036 -13.54506 -13.36282 -13.19365 -13.08176 -12.98073 -12.69745 -12.63166 -12.17973 -12.06217 -12.01924 -11.84868 -11.54571 -11.29040 -11.22614 -11.06446 -10.95359 -10.89141 -10.68423 -10.59922 -10.53895 -10.42040 -10.22254 -10.13093 -9.90828 -9.62326 -8.96591 -8.62527 -8.47998 -7.25191 -6.07287 -4.16551 1.63413 2.14757 2.77386 3.22411 3.30979 3.33467 3.69699 3.82005 3.99736 4.20114 4.36156 4.44589 4.48308 4.64234 4.89199 4.91168 4.92928 4.95485 4.99218 5.05770 5.09290 5.22998 5.26375 5.33241 5.42193 5.46562 5.48992 5.55856 5.61214 5.62220 5.66297 5.79440 5.82370 5.85559 5.86300 5.89548 5.92845 6.03687 6.13827 6.44897 6.55528 6.64339 6.76138 6.90467 7.20107 7.22305 7.33516 7.48112 7.85260 7.96907 8.19559 8.23696 8.70561 8.93813 9.50507 10.97908 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.020285 B = 0.002534 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.967494 B =11048.651469 C =11226.733230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C -0.028 4.028 4 H 0.092 0.908 5 C 0.182 3.818 6 N -0.284 5.284 7 N -0.309 5.309 8 C 0.358 3.642 9 N -0.466 5.466 10 C 0.071 3.929 11 C 0.067 3.933 12 N -0.542 5.542 13 C 0.187 3.813 14 C -0.549 4.549 15 H 0.059 0.941 16 C 0.065 3.935 17 N -0.890 5.890 18 Si 0.889 3.111 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.065 3.935 23 C 0.073 3.927 24 N -0.465 5.465 25 C 0.078 3.922 26 C 0.114 3.886 27 H 0.071 0.929 28 C -0.145 4.145 29 O -0.562 6.562 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.055 0.945 36 H 0.068 0.932 37 H 0.051 0.949 38 H 0.076 0.924 39 H 0.029 0.971 40 H 0.036 0.964 41 H 0.262 0.738 42 H 0.049 0.951 43 H 0.076 0.924 44 H 0.068 0.932 45 H 0.057 0.943 46 H 0.080 0.920 47 H 0.098 0.902 48 H 0.085 0.915 49 H 0.067 0.933 50 H 0.067 0.933 51 H 0.060 0.940 52 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.487 -16.853 -16.966 25.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.156 4.156 3 C -0.049 4.049 4 H 0.110 0.890 5 C -0.085 4.085 6 N -0.125 5.125 7 N -0.153 5.153 8 C 0.002 3.998 9 N -0.193 5.193 10 C -0.056 4.056 11 C -0.062 4.062 12 N -0.267 5.267 13 C 0.062 3.938 14 C -0.588 4.588 15 H 0.077 0.923 16 C -0.138 4.138 17 N -0.528 5.528 18 Si 0.717 3.283 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.064 4.064 23 C -0.054 4.054 24 N -0.158 5.158 25 C -0.065 4.065 26 C 0.054 3.946 27 H 0.089 0.911 28 C -0.202 4.202 29 O -0.368 6.368 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.095 0.905 39 H 0.048 0.952 40 H 0.054 0.946 41 H 0.072 0.928 42 H 0.067 0.933 43 H 0.094 0.906 44 H 0.087 0.913 45 H 0.076 0.924 46 H 0.099 0.901 47 H 0.117 0.883 48 H 0.103 0.897 49 H 0.086 0.914 50 H 0.086 0.914 51 H 0.079 0.921 52 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 10.231 -16.857 -15.820 25.281 hybrid contribution -1.678 1.120 -1.665 2.615 sum 8.554 -15.738 -17.485 25.031 Atomic orbital electron populations 1.21736 0.95159 1.02016 1.01808 1.21591 0.96847 0.94069 1.03059 1.20420 0.97748 0.96388 0.90350 0.88969 1.24266 0.97565 0.88929 0.97784 1.73969 1.20659 1.21601 0.96226 1.74693 1.12087 1.03782 1.24689 1.22550 0.99098 0.96382 0.81801 1.59000 1.15381 1.10853 1.34089 1.22349 0.93546 0.92847 0.96904 1.21939 0.95025 0.93831 0.95399 1.62701 1.16824 1.18209 1.28922 1.19753 0.92856 0.87202 0.94034 1.21778 1.32561 1.09623 0.94868 0.92310 1.24968 0.96288 0.97358 0.95192 1.69958 1.42179 1.24594 1.16113 0.86594 0.79604 0.80146 0.81982 1.19879 1.20973 1.20961 1.21963 0.94235 0.92280 0.97920 1.22297 0.92930 0.97520 0.92628 1.46218 1.38866 1.23078 1.07615 1.22039 0.98729 0.97611 0.88092 1.21728 0.90669 0.95871 0.86309 0.91103 1.21758 1.02161 0.94151 1.02169 1.86549 1.84264 1.29252 1.36741 0.92152 0.92919 0.92773 0.90834 0.90253 0.92653 0.91363 0.93065 0.90538 0.95247 0.94620 0.92830 0.93307 0.90578 0.91339 0.92436 0.90112 0.88348 0.89667 0.91413 0.91422 0.92084 0.77468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.63 37.16 0.36 -0.76 16 2 C -0.12 -0.80 5.26 -26.73 -0.14 -0.94 16 3 C -0.03 -0.22 2.05 -91.78 -0.19 -0.41 16 4 H 0.09 0.66 6.86 -51.93 -0.36 0.30 16 5 C 0.18 2.10 4.25 -154.02 -0.65 1.45 16 6 N -0.28 -4.21 12.18 32.99 0.40 -3.81 16 7 N -0.31 -5.17 12.12 30.32 0.37 -4.80 16 8 C 0.36 5.38 6.49 -318.86 -2.07 3.31 16 9 N -0.47 -7.31 4.73 -174.35 -0.82 -8.14 16 10 C 0.07 1.14 5.55 -3.77 -0.02 1.12 16 11 C 0.07 1.26 5.24 -3.76 -0.02 1.24 16 12 N -0.54 -11.30 4.92 -235.91 -1.16 -12.46 16 13 C 0.19 4.66 5.14 -4.97 -0.03 4.64 16 14 C -0.55 -14.54 7.66 -34.44 -0.26 -14.80 16 15 H 0.06 1.55 5.82 -52.48 -0.31 1.24 16 16 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 17 N -0.89 -25.66 13.29 55.43 0.74 -24.92 16 18 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 19 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 C 0.07 1.22 5.31 -3.77 -0.02 1.20 16 23 C 0.07 1.19 5.48 -3.77 -0.02 1.17 16 24 N -0.47 -5.56 3.21 -121.47 -0.39 -5.95 16 25 C 0.08 0.67 10.98 59.84 0.66 1.33 16 26 C 0.11 0.94 3.20 -26.73 -0.09 0.85 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 28 C -0.15 -1.31 9.27 37.16 0.34 -0.96 16 29 O -0.56 -4.17 13.23 -35.23 -0.47 -4.63 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.53 7.58 -51.93 -0.39 0.13 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.31 6.74 -51.92 -0.35 -0.04 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.07 1.00 8.13 -51.93 -0.42 0.58 16 37 H 0.05 1.05 6.62 -51.93 -0.34 0.70 16 38 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 39 H 0.03 0.78 8.12 -51.93 -0.42 0.36 16 40 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 42 H 0.05 0.99 6.77 -51.93 -0.35 0.64 16 43 H 0.08 1.41 8.13 -51.92 -0.42 0.99 16 44 H 0.07 1.03 8.13 -51.93 -0.42 0.61 16 45 H 0.06 1.00 8.12 -51.93 -0.42 0.58 16 46 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 47 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 48 H 0.08 0.51 7.07 -51.93 -0.37 0.15 16 49 H 0.07 0.72 7.13 -51.93 -0.37 0.35 16 50 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 51 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 52 H 0.38 1.35 7.59 45.56 0.35 1.70 16 LS Contribution 406.17 15.07 6.12 6.12 Total: -1.00 -31.74 406.17 -10.87 -42.60 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -8.39 Total: 0.00 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -2.25 Total: 0.11 kcal Atomic # 7 Polarization: -59.21 SS G_CDS: -0.87 Total: -60.08 kcal Atomic # 8 Polarization: -4.17 SS G_CDS: -0.47 Total: -4.63 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -31.74 -10.87 -42.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646690921.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.808 kcal (2) G-P(sol) polarization free energy of solvation -31.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds