Wall clock time and date at job start Tue Mar 31 2020 22:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86795 * 120.00151 * 2 1 4 4 H 1.48507 * 109.46873 * 239.99879 * 3 2 1 5 5 H 1.48494 * 109.47134 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47487 * 119.99876 * 3 2 1 7 7 C 1.38820 * 119.99811 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99441 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00125 * 0.02562 * 7 2 1 10 10 C 1.46493 * 119.99849 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.47220 * 324.99815 * 10 9 7 12 12 C 1.53003 * 109.47395 * 85.00070 * 10 9 7 13 13 C 1.52995 * 109.47355 * 180.02562 * 12 10 9 14 14 C 1.53004 * 109.46806 * 299.99604 * 13 12 10 15 15 C 1.53005 * 109.46875 * 60.00465 * 14 13 12 16 16 H 1.09001 * 109.46854 * 179.97438 * 15 14 13 17 17 N 1.46499 * 109.47163 * 59.99608 * 15 14 13 18 18 C 1.34779 * 119.99872 * 85.00260 * 17 15 14 19 19 O 1.21286 * 120.00040 * 359.97438 * 18 17 15 20 20 C 1.50698 * 120.00201 * 179.97438 * 18 17 15 21 21 C 1.52992 * 109.47592 * 179.97438 * 20 18 17 22 22 C 1.52997 * 109.47482 * 179.97438 * 21 20 18 23 23 N 1.46899 * 109.47254 * 179.97438 * 22 21 20 24 24 C 1.46843 * 111.00049 * 294.21280 * 23 22 21 25 25 C 1.53043 * 109.52446 * 174.16274 * 24 23 22 26 26 C 1.53115 * 109.28035 * 59.17281 * 25 24 23 27 27 C 1.53119 * 109.16391 * 302.35079 * 26 25 24 28 28 C 1.46842 * 111.00041 * 169.99637 * 23 22 21 29 29 C 1.52995 * 109.46779 * 299.99702 * 15 14 13 30 30 H 0.96993 * 120.00288 * 0.02562 * 1 2 3 31 31 H 0.96995 * 119.99553 * 0.02562 * 9 7 2 32 32 H 1.08996 * 109.46817 * 59.99350 * 12 10 9 33 33 H 1.09003 * 109.46915 * 300.00240 * 12 10 9 34 34 H 1.09002 * 109.47259 * 179.97438 * 13 12 10 35 35 H 1.09000 * 109.47313 * 59.99713 * 13 12 10 36 36 H 1.09000 * 109.47274 * 300.00133 * 14 13 12 37 37 H 1.08995 * 109.47038 * 179.97438 * 14 13 12 38 38 H 0.96992 * 119.99793 * 264.99891 * 17 15 14 39 39 H 1.09002 * 109.47210 * 59.99599 * 20 18 17 40 40 H 1.09001 * 109.46665 * 299.99857 * 20 18 17 41 41 H 1.09002 * 109.47103 * 59.99616 * 21 20 18 42 42 H 1.08998 * 109.46862 * 300.00428 * 21 20 18 43 43 H 1.09002 * 109.47153 * 59.99783 * 22 21 20 44 44 H 1.09001 * 109.46832 * 299.99974 * 22 21 20 45 45 H 1.09004 * 109.46019 * 294.17499 * 24 23 22 46 46 H 1.08999 * 109.46883 * 54.14319 * 24 23 22 47 47 H 1.09007 * 109.49669 * 299.23395 * 25 24 23 48 48 H 1.08996 * 109.50102 * 179.12000 * 25 24 23 49 49 H 1.08996 * 109.52692 * 182.44132 * 26 25 24 50 50 H 1.09007 * 109.52268 * 62.25145 * 26 25 24 51 51 H 1.09002 * 109.50021 * 297.71564 * 27 26 25 52 52 H 1.09003 * 109.53874 * 177.61210 * 27 26 25 53 53 H 1.08998 * 109.46877 * 305.85973 * 28 23 22 54 54 H 1.09002 * 109.46302 * 65.82604 * 28 23 22 55 55 H 1.09002 * 109.47015 * 180.02562 * 29 15 14 56 56 H 1.09004 * 109.47151 * 299.99696 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6962 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3882 0.0005 10 6 2.0580 -3.6568 0.0017 11 1 2.9691 -3.5509 -0.5871 12 6 2.4208 -4.0351 1.4391 13 6 3.1863 -5.3597 1.4403 14 6 2.3101 -6.4556 0.8303 15 6 1.9473 -6.0775 -0.6072 16 1 1.3234 -6.8584 -1.0420 17 7 3.1720 -5.9344 -1.3984 18 6 3.7394 -7.0183 -1.9638 19 8 3.2364 -8.1122 -1.8172 20 6 4.9989 -6.8712 -2.7781 21 6 5.4307 -8.2423 -3.3019 22 6 6.7090 -8.0928 -4.1292 23 7 7.1240 -9.4094 -4.6316 24 6 7.5175 -10.2938 -3.5274 25 6 7.8029 -11.6955 -4.0717 26 6 8.9244 -11.6156 -5.1110 27 6 8.5092 -10.6510 -6.2254 28 6 8.2034 -9.2797 -5.6187 29 6 1.1818 -4.7528 -0.6083 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3881 -0.0002 32 1 1.5097 -4.1410 2.0279 33 1 3.0454 -3.2545 1.8736 34 1 3.4452 -5.6289 2.4643 35 1 4.0975 -5.2533 0.8516 36 1 1.3989 -6.5621 1.4190 37 1 2.8556 -7.3993 0.8306 38 1 3.5744 -5.0597 -1.5153 39 1 5.7894 -6.4560 -2.1530 40 1 4.8119 -6.2031 -3.6189 41 1 4.6403 -8.6579 -3.9270 42 1 5.6177 -8.9100 -2.4610 43 1 7.4996 -7.6770 -3.5045 44 1 6.5215 -7.4252 -4.9702 45 1 8.4145 -9.9004 -3.0490 46 1 6.7097 -10.3452 -2.7975 47 1 6.9022 -12.0950 -4.5380 48 1 8.1100 -12.3476 -3.2541 49 1 9.1013 -12.6049 -5.5328 50 1 9.8360 -11.2527 -4.6361 51 1 7.6197 -11.0341 -6.7256 52 1 9.3206 -10.5569 -6.9471 53 1 7.8937 -8.5944 -6.4077 54 1 9.0971 -8.8911 -5.1306 55 1 0.9230 -4.4835 -1.6323 56 1 0.2706 -4.8592 -0.0197 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714418484.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:41 Heat of formation + Delta-G solvation = -76.367446 kcal Electronic energy + Delta-G solvation = -29627.736092 eV Core-core repulsion = 25762.325528 eV Total energy + Delta-G solvation = -3865.410564 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 337.247 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.22861 -39.98656 -39.21929 -36.17960 -35.71744 -34.39501 -33.09107 -32.80101 -31.73198 -30.87999 -29.51859 -27.70356 -25.67709 -24.81829 -23.93508 -23.32452 -22.59903 -22.18880 -21.32513 -20.59636 -20.07199 -19.13994 -18.16264 -17.10204 -16.92210 -16.74142 -16.50162 -16.18428 -15.91846 -15.46327 -15.40291 -15.26122 -15.07955 -14.86768 -14.74678 -14.46029 -14.31785 -13.97694 -13.86358 -13.51440 -13.26922 -13.09465 -13.01003 -12.89029 -12.80925 -12.74389 -12.52112 -12.34592 -12.24658 -12.10481 -12.06776 -11.93891 -11.76352 -11.57808 -11.54860 -11.44634 -11.25233 -11.12229 -10.99092 -10.81984 -10.76419 -9.95749 -9.23789 -8.97138 -7.91009 -5.18947 1.49080 1.51215 1.57157 1.74295 2.28275 2.58256 2.97431 3.42239 3.65545 3.81873 3.88443 3.90227 3.93827 3.94510 4.01215 4.11563 4.19154 4.29610 4.31368 4.33967 4.37436 4.46131 4.52531 4.56178 4.59549 4.61724 4.68485 4.70165 4.73277 4.75050 4.76984 4.82937 4.85989 4.95304 4.99837 5.06158 5.09007 5.12013 5.19293 5.22549 5.23927 5.24308 5.30691 5.37472 5.38870 5.49051 5.52156 5.54133 5.58918 5.69394 6.17588 6.21676 6.30900 6.64470 7.34000 7.37094 8.14205 8.36197 9.32274 Molecular weight = 337.25amu Principal moments of inertia in cm(-1) A = 0.016529 B = 0.001905 C = 0.001777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.595714 B =14695.696718 C =15751.202858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.078 4.078 3 Si 0.969 3.031 4 H -0.276 1.276 5 H -0.300 1.300 6 H -0.280 1.280 7 C -0.234 4.234 8 H 0.078 0.922 9 N -0.738 5.738 10 C 0.178 3.822 11 H 0.049 0.951 12 C -0.128 4.128 13 C -0.103 4.103 14 C -0.121 4.121 15 C 0.159 3.841 16 H 0.077 0.923 17 N -0.715 5.715 18 C 0.511 3.489 19 O -0.585 6.585 20 C -0.135 4.135 21 C -0.090 4.090 22 C 0.059 3.941 23 N -0.552 5.552 24 C 0.051 3.949 25 C -0.117 4.117 26 C -0.120 4.120 27 C -0.116 4.116 28 C 0.054 3.946 29 C -0.121 4.121 30 H 0.249 0.751 31 H 0.371 0.629 32 H 0.045 0.955 33 H 0.042 0.958 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.061 0.939 38 H 0.409 0.591 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.041 0.959 44 H 0.084 0.916 45 H 0.032 0.968 46 H 0.069 0.931 47 H 0.061 0.939 48 H 0.073 0.927 49 H 0.071 0.929 50 H 0.060 0.940 51 H 0.062 0.938 52 H 0.078 0.922 53 H 0.078 0.922 54 H 0.033 0.967 55 H 0.061 0.939 56 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.417 -21.613 -8.665 29.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.270 4.270 3 Si 0.798 3.202 4 H -0.202 1.202 5 H -0.227 1.227 6 H -0.206 1.206 7 C -0.366 4.366 8 H 0.096 0.904 9 N -0.377 5.377 10 C 0.070 3.930 11 H 0.067 0.933 12 C -0.168 4.168 13 C -0.141 4.141 14 C -0.159 4.159 15 C 0.053 3.947 16 H 0.095 0.905 17 N -0.368 5.368 18 C 0.299 3.701 19 O -0.466 6.466 20 C -0.175 4.175 21 C -0.128 4.128 22 C -0.068 4.068 23 N -0.277 5.277 24 C -0.076 4.076 25 C -0.155 4.155 26 C -0.158 4.158 27 C -0.154 4.154 28 C -0.074 4.074 29 C -0.160 4.160 30 H 0.057 0.943 31 H 0.203 0.797 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.246 0.754 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.059 0.941 44 H 0.103 0.897 45 H 0.050 0.950 46 H 0.088 0.912 47 H 0.079 0.921 48 H 0.092 0.908 49 H 0.090 0.910 50 H 0.079 0.921 51 H 0.081 0.919 52 H 0.097 0.903 53 H 0.097 0.903 54 H 0.051 0.949 55 H 0.080 0.920 56 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 17.807 -22.457 -8.815 29.986 hybrid contribution 0.312 1.967 0.640 2.092 sum 18.120 -20.490 -8.175 28.548 Atomic orbital electron populations 1.69806 1.06590 1.25889 1.59848 1.25522 0.96293 1.00979 1.04216 0.85276 0.77182 0.79547 0.78157 1.20249 1.22679 1.20619 1.19577 0.91436 0.85131 1.40442 0.90416 1.42641 1.05426 1.00993 1.88618 1.20367 0.94095 0.84549 0.94037 0.93284 1.22112 0.99393 0.96449 0.98859 1.21398 0.98250 0.93643 1.00845 1.21837 1.00710 0.98251 0.95150 1.20754 0.85783 0.96635 0.91511 0.90522 1.46213 1.27482 1.10903 1.52168 1.21220 0.86387 0.83544 0.78938 1.90670 1.65588 1.27469 1.62827 1.21660 0.94657 1.00261 1.00887 1.21185 0.97124 0.95381 0.99141 1.22087 0.95850 0.90148 0.98742 1.61877 1.38668 1.12306 1.14859 1.22147 0.98943 0.93670 0.92871 1.21590 0.99137 0.95702 0.99089 1.21579 0.97801 0.99995 0.96400 1.21590 1.01564 0.94403 0.97839 1.22131 0.91997 0.98222 0.95008 1.21958 0.98988 0.93657 1.01360 0.94256 0.79738 0.93605 0.93959 0.91534 0.91712 0.90742 0.92051 0.75432 0.86833 0.86862 0.92501 0.92562 0.94091 0.89721 0.94990 0.91247 0.92062 0.90810 0.91046 0.92109 0.91916 0.90298 0.90323 0.94904 0.92015 0.90828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.47 13.06 21.65 0.28 -58.19 16 2 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 3 Si 0.97 45.04 29.55 68.60 2.03 47.07 16 4 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 5 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 6 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.23 -12.40 9.93 84.03 0.83 -11.56 16 8 H 0.08 3.90 7.83 -2.91 -0.02 3.88 16 9 N -0.74 -35.26 5.12 -322.94 -1.65 -36.91 16 10 C 0.18 6.33 2.60 44.99 0.12 6.45 16 11 H 0.05 1.68 6.44 -2.39 -0.02 1.67 16 12 C -0.13 -4.21 5.50 30.59 0.17 -4.04 16 13 C -0.10 -2.62 5.77 30.59 0.18 -2.45 16 14 C -0.12 -3.02 5.60 30.60 0.17 -2.85 16 15 C 0.16 4.18 2.78 44.99 0.13 4.31 16 16 H 0.08 2.18 7.58 -2.39 -0.02 2.16 16 17 N -0.72 -16.75 4.23 -442.53 -1.87 -18.63 16 18 C 0.51 12.31 7.79 87.66 0.68 12.99 16 19 O -0.59 -18.67 15.64 -3.05 -0.05 -18.72 16 20 C -0.13 -2.18 5.70 29.84 0.17 -2.00 16 21 C -0.09 -1.63 4.43 30.59 0.14 -1.50 16 22 C 0.06 0.87 4.96 86.30 0.43 1.30 16 23 N -0.55 -8.92 4.66 -896.37 -4.17 -13.10 16 24 C 0.05 0.80 5.29 86.33 0.46 1.26 16 25 C -0.12 -1.58 6.09 30.65 0.19 -1.39 16 26 C -0.12 -1.34 6.00 30.67 0.18 -1.16 16 27 C -0.12 -1.34 6.09 30.65 0.19 -1.15 16 28 C 0.05 0.71 5.46 86.33 0.47 1.18 16 29 C -0.12 -3.69 5.08 30.59 0.16 -3.53 16 30 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 31 H 0.37 19.42 7.80 -92.71 -0.72 18.69 16 32 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.06 1.54 7.60 -2.39 -0.02 1.52 16 36 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.41 8.69 6.87 -92.71 -0.64 8.05 16 39 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.06 1.28 8.10 -2.39 -0.02 1.26 16 42 H 0.06 1.17 6.39 -2.39 -0.02 1.16 16 43 H 0.04 0.55 8.12 -2.39 -0.02 0.53 16 44 H 0.08 1.09 7.99 -2.39 -0.02 1.08 16 45 H 0.03 0.48 8.14 -2.38 -0.02 0.46 16 46 H 0.07 1.22 6.21 -2.39 -0.01 1.21 16 47 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 48 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 49 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 50 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 51 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 52 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 53 H 0.08 0.95 8.02 -2.39 -0.02 0.93 16 54 H 0.03 0.42 8.14 -2.39 -0.02 0.40 16 55 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 56 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -66.27 423.83 -0.84 -67.11 By element: Atomic # 1 Polarization: 39.94 SS G_CDS: -0.52 Total: 39.42 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: 5.12 Total: -8.05 kcal Atomic # 7 Polarization: -119.41 SS G_CDS: -7.42 Total: -126.82 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -0.05 Total: -18.72 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -66.27 -0.84 -67.11 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714418484.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.259 kcal (2) G-P(sol) polarization free energy of solvation -66.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds