Wall clock time and date at job start Tue Mar 31 2020 21:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.46952 * 2 1 4 4 C 1.53004 * 109.47424 * 119.99847 * 2 1 3 5 5 N 1.46904 * 109.46839 * 65.00314 * 4 2 1 6 6 C 1.48809 * 111.18657 * 52.66267 * 5 4 2 7 7 C 1.54933 * 103.34631 * 159.50716 * 6 5 4 8 8 C 1.54599 * 102.92320 * 322.68671 * 7 6 5 9 9 C 1.47896 * 110.99817 * 170.00233 * 5 4 2 10 10 H 1.08999 * 109.91765 * 333.70059 * 9 5 4 11 11 C 1.50696 * 109.91850 * 94.79911 * 9 5 4 12 12 O 1.21279 * 120.00328 * 359.60079 * 11 9 5 13 13 N 1.34777 * 120.00307 * 179.59563 * 11 9 5 14 14 C 1.46496 * 120.00601 * 179.97438 * 13 11 9 15 15 C 1.53000 * 109.47519 * 154.99911 * 14 13 11 16 16 C 1.52996 * 109.47359 * 180.02562 * 15 14 13 17 17 C 1.52995 * 109.47465 * 300.00435 * 16 15 14 18 18 N 1.46496 * 109.47630 * 179.97438 * 17 16 15 19 19 C 1.36934 * 120.00548 * 154.99681 * 18 17 16 20 20 H 1.08004 * 119.99288 * 0.02562 * 19 18 17 21 21 C 1.38805 * 120.00389 * 180.02562 * 19 18 17 22 22 N 1.31624 * 120.00257 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47174 * 270.00277 * 23 21 19 25 25 H 1.48501 * 109.47062 * 30.00228 * 23 21 19 26 26 H 1.48499 * 109.46981 * 150.00382 * 23 21 19 27 27 C 1.53000 * 109.47187 * 59.99460 * 17 16 15 28 28 C 1.52995 * 109.47468 * 275.00445 * 14 13 11 29 29 H 1.08999 * 109.47489 * 60.00259 * 1 2 3 30 30 H 1.09006 * 109.47212 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47371 * 299.99723 * 1 2 3 32 32 H 1.08999 * 109.47371 * 240.00277 * 2 1 3 33 33 H 1.08996 * 109.47164 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.46865 * 299.99675 * 3 2 1 35 35 H 1.08990 * 109.47154 * 59.99992 * 3 2 1 36 36 H 1.08996 * 109.46994 * 305.00488 * 4 2 1 37 37 H 1.09006 * 109.46920 * 185.00014 * 4 2 1 38 38 H 1.09001 * 110.51953 * 41.06932 * 6 5 4 39 39 H 1.09001 * 110.69715 * 278.02568 * 6 5 4 40 40 H 1.09005 * 110.72035 * 204.33036 * 7 6 5 41 41 H 1.08999 * 110.87814 * 81.12355 * 7 6 5 42 42 H 1.08994 * 110.31173 * 263.04867 * 8 7 6 43 43 H 1.09006 * 110.30691 * 140.87375 * 8 7 6 44 44 H 0.97006 * 119.99876 * 0.02562 * 13 11 9 45 45 H 1.09002 * 109.46908 * 35.00168 * 14 13 11 46 46 H 1.09002 * 109.46821 * 60.00204 * 15 14 13 47 47 H 1.09006 * 109.47229 * 300.00745 * 15 14 13 48 48 H 1.08997 * 109.47363 * 179.97438 * 16 15 14 49 49 H 1.09002 * 109.47071 * 60.00256 * 16 15 14 50 50 H 1.09002 * 109.46830 * 299.99968 * 17 16 15 51 51 H 0.96999 * 119.99694 * 335.00205 * 18 17 16 52 52 H 0.97001 * 119.99885 * 179.97438 * 22 21 19 53 53 H 1.09002 * 109.46821 * 60.00502 * 27 17 16 54 54 H 1.09006 * 109.47229 * 179.97438 * 27 17 16 55 55 H 1.09002 * 109.46830 * 299.99770 * 28 14 13 56 56 H 1.09007 * 109.47250 * 59.99436 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6515 -2.1367 1.1904 6 6 2.0756 -2.7579 -0.0936 7 6 2.0821 -4.2736 0.2273 8 6 2.6072 -4.3171 1.6807 9 6 2.3241 -2.9156 2.2526 10 1 3.2604 -2.4321 2.5312 11 6 1.4248 -3.0246 3.4569 12 8 0.3306 -2.5015 3.4461 13 7 1.8363 -3.7034 4.5461 14 6 0.9624 -3.8089 5.7171 15 6 1.3270 -5.0629 6.5143 16 6 0.4138 -5.1734 7.7369 17 6 0.5927 -3.9373 8.6206 18 7 -0.2821 -4.0428 9.7909 19 6 0.0344 -3.3768 10.9447 20 1 0.9289 -2.7733 10.9917 21 6 -0.7942 -3.4772 12.0538 22 7 -0.4901 -2.8366 13.1627 23 14 -2.3416 -4.5204 11.9721 24 1 -3.4781 -3.6847 11.5084 25 1 -2.1325 -5.6426 11.0223 26 1 -2.6444 -5.0632 13.3208 27 6 0.2281 -2.6834 7.8233 28 6 1.1418 -2.5728 6.6005 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.1299 1.4426 -0.0005 34 1 1.6766 1.9563 -0.8901 35 1 1.6766 1.9563 0.8899 36 1 1.6054 -0.2618 2.1370 37 1 3.1264 -0.6443 1.2951 38 1 3.0738 -2.4189 -0.3706 39 1 1.3593 -2.5351 -0.8845 40 1 2.7566 -4.8068 -0.4427 41 1 1.0754 -4.6875 0.1683 42 1 3.6780 -4.5202 1.6902 43 1 2.0725 -5.0746 2.2537 44 1 2.7116 -4.1215 4.5550 45 1 -0.0756 -3.8748 5.3910 46 1 2.3650 -4.9970 6.8405 47 1 1.1992 -5.9436 5.8849 48 1 0.6733 -6.0669 8.3046 49 1 -0.6240 -5.2395 7.4104 50 1 1.6306 -3.8712 8.9471 51 1 -1.0856 -4.5846 9.7485 52 1 -1.0694 -2.9065 13.9376 53 1 -0.8098 -2.7495 7.4968 54 1 0.3551 -1.8027 8.4530 55 1 2.1798 -2.5069 6.9267 56 1 0.8820 -1.6794 6.0325 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026519476.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:37 Heat of formation + Delta-G solvation = -63.793738 kcal Electronic energy + Delta-G solvation = -30396.385987 eV Core-core repulsion = 26531.520659 eV Total energy + Delta-G solvation = -3864.865328 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 337.247 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.41223 -40.01943 -38.82133 -36.53684 -36.40087 -34.61354 -32.93851 -32.06637 -31.70503 -30.68569 -28.82019 -27.97688 -26.37703 -25.32452 -23.84732 -23.36475 -22.51886 -22.11630 -21.27358 -20.71676 -20.43635 -19.53885 -18.20882 -17.42120 -17.15850 -16.82319 -16.38842 -16.00279 -15.85827 -15.62716 -15.14681 -15.02803 -14.91910 -14.62963 -14.52213 -14.43368 -14.34160 -13.97592 -13.81608 -13.58354 -13.34561 -13.19293 -13.11649 -12.92734 -12.80488 -12.53888 -12.48003 -12.39626 -12.26443 -12.13285 -12.06275 -11.94448 -11.85063 -11.79855 -11.66672 -11.60541 -11.48599 -11.41361 -11.22248 -10.89882 -10.64529 -9.95209 -9.30817 -9.29538 -8.02067 -5.34835 1.37028 1.40669 1.47705 1.75627 2.10222 2.48543 3.05384 3.29032 3.53055 3.60370 3.66137 3.76286 3.86158 3.91090 3.97263 4.04176 4.15115 4.21814 4.25600 4.32686 4.33195 4.35340 4.51847 4.53340 4.57724 4.61277 4.64288 4.69828 4.75947 4.79967 4.81792 4.86698 4.90266 4.93751 5.01992 5.02930 5.07707 5.11915 5.13688 5.15740 5.22894 5.23211 5.25736 5.29153 5.42390 5.48321 5.48780 5.55577 5.62512 5.78476 5.88400 6.08982 6.22789 6.71717 7.08831 7.42682 7.86126 8.04757 9.19595 Molecular weight = 337.25amu Principal moments of inertia in cm(-1) A = 0.018786 B = 0.002171 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.149875 B =12891.809557 C =13678.450532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.090 4.090 3 C -0.145 4.145 4 C 0.057 3.943 5 N -0.516 5.516 6 C 0.037 3.963 7 C -0.121 4.121 8 C -0.117 4.117 9 C 0.049 3.951 10 H 0.093 0.907 11 C 0.515 3.485 12 O -0.567 6.567 13 N -0.714 5.714 14 C 0.155 3.845 15 C -0.105 4.105 16 C -0.117 4.117 17 C 0.176 3.824 18 N -0.754 5.754 19 C -0.226 4.226 20 H 0.056 0.944 21 C -0.068 4.068 22 N -0.986 5.986 23 Si 0.954 3.046 24 H -0.284 1.284 25 H -0.248 1.248 26 H -0.295 1.295 27 C -0.124 4.124 28 C -0.112 4.112 29 H 0.059 0.941 30 H 0.050 0.950 31 H 0.034 0.966 32 H 0.084 0.916 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.045 0.955 36 H 0.048 0.952 37 H 0.046 0.954 38 H 0.062 0.938 39 H 0.084 0.916 40 H 0.099 0.901 41 H 0.061 0.939 42 H 0.106 0.894 43 H 0.074 0.926 44 H 0.414 0.586 45 H 0.063 0.937 46 H 0.086 0.914 47 H 0.092 0.908 48 H 0.075 0.925 49 H 0.060 0.940 50 H 0.047 0.953 51 H 0.364 0.636 52 H 0.257 0.743 53 H 0.046 0.954 54 H 0.035 0.965 55 H 0.072 0.928 56 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.635 -3.588 -34.526 36.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.108 4.108 3 C -0.203 4.203 4 C -0.071 4.071 5 N -0.240 5.240 6 C -0.090 4.090 7 C -0.159 4.159 8 C -0.155 4.155 9 C -0.063 4.063 10 H 0.110 0.890 11 C 0.301 3.699 12 O -0.445 6.445 13 N -0.367 5.367 14 C 0.050 3.950 15 C -0.143 4.143 16 C -0.156 4.156 17 C 0.068 3.932 18 N -0.396 5.396 19 C -0.357 4.357 20 H 0.074 0.926 21 C -0.259 4.259 22 N -0.636 5.636 23 Si 0.782 3.218 24 H -0.211 1.211 25 H -0.173 1.173 26 H -0.222 1.222 27 C -0.165 4.165 28 C -0.151 4.151 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.053 0.947 32 H 0.102 0.898 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.080 0.920 39 H 0.102 0.898 40 H 0.117 0.883 41 H 0.080 0.920 42 H 0.125 0.875 43 H 0.093 0.907 44 H 0.251 0.749 45 H 0.081 0.919 46 H 0.104 0.896 47 H 0.111 0.889 48 H 0.093 0.907 49 H 0.079 0.921 50 H 0.065 0.935 51 H 0.197 0.803 52 H 0.065 0.935 53 H 0.065 0.935 54 H 0.053 0.947 55 H 0.090 0.910 56 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 10.412 -3.098 -34.337 36.015 hybrid contribution -0.210 0.147 1.048 1.079 sum 10.202 -2.951 -33.289 34.942 Atomic orbital electron populations 1.21675 0.95386 1.01513 1.00627 1.21158 0.96042 0.96378 0.97250 1.21805 1.01284 0.95173 1.02021 1.22328 0.97822 0.88158 0.98746 1.64330 1.55496 1.01874 1.02318 1.23349 0.99867 0.94207 0.91589 1.22494 1.01982 0.95506 0.95910 1.22447 1.03515 0.92923 0.96635 1.22410 0.94887 0.97906 0.91122 0.88969 1.21066 0.87371 0.77278 0.84202 1.90694 1.23832 1.47225 1.82713 1.45938 1.21052 1.55570 1.14134 1.20780 0.94523 0.95000 0.84682 1.21645 1.00658 0.96611 0.95413 1.21697 1.00363 0.97524 0.95971 1.20464 0.93531 0.93581 0.85603 1.42847 1.27910 1.58287 1.10579 1.19031 1.05984 1.21028 0.89618 0.92627 1.25512 1.02574 1.02262 0.95574 1.69889 1.40975 1.49038 1.03740 0.85413 0.79860 0.79562 0.76987 1.21053 1.17264 1.22202 1.22018 0.98954 0.99535 0.95998 1.21757 1.00102 0.97903 0.95344 0.92242 0.93096 0.94716 0.89801 0.91860 0.91563 0.93555 0.93336 0.93558 0.92015 0.89798 0.88284 0.92005 0.87515 0.90723 0.74879 0.91897 0.89564 0.88946 0.90667 0.92102 0.93452 0.80273 0.93452 0.93540 0.94653 0.90970 0.93892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 9.08 71.98 0.65 -1.78 16 2 C -0.09 -1.30 2.61 -10.79 -0.03 -1.33 16 3 C -0.15 -1.80 9.19 71.98 0.66 -1.14 16 4 C 0.06 1.00 4.42 86.30 0.38 1.38 16 5 N -0.52 -9.25 3.99 -861.67 -3.44 -12.69 16 6 C 0.04 0.43 5.10 86.59 0.44 0.87 16 7 C -0.12 -1.16 7.06 31.80 0.22 -0.94 16 8 C -0.12 -1.11 6.48 31.48 0.20 -0.91 16 9 C 0.05 0.76 2.87 44.31 0.13 0.89 16 10 H 0.09 1.13 7.57 -2.39 -0.02 1.12 16 11 C 0.51 11.95 6.95 87.66 0.61 12.56 16 12 O -0.57 -19.39 16.12 -3.03 -0.05 -19.44 16 13 N -0.71 -13.21 4.95 -442.55 -2.19 -15.40 16 14 C 0.16 3.72 2.45 44.99 0.11 3.83 16 15 C -0.10 -2.09 5.39 30.59 0.16 -1.92 16 16 C -0.12 -3.24 5.39 30.59 0.16 -3.07 16 17 C 0.18 6.55 2.77 44.99 0.12 6.68 16 18 N -0.75 -35.58 4.92 -322.96 -1.59 -37.17 16 19 C -0.23 -13.05 10.41 84.03 0.87 -12.18 16 20 H 0.06 3.53 8.06 -2.91 -0.02 3.50 16 21 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 22 N -0.99 -64.36 13.97 21.65 0.30 -64.06 16 23 Si 0.95 46.53 27.74 68.60 1.90 48.44 16 24 H -0.28 -13.74 7.11 99.48 0.71 -13.04 16 25 H -0.25 -10.80 6.52 99.48 0.65 -10.15 16 26 H -0.30 -14.50 7.11 99.48 0.71 -13.80 16 27 C -0.12 -4.55 5.50 30.61 0.17 -4.38 16 28 C -0.11 -3.26 5.50 30.61 0.17 -3.09 16 29 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.05 1.07 7.75 -2.38 -0.02 1.05 16 31 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.08 0.99 6.54 -2.39 -0.02 0.97 16 33 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.05 0.65 7.81 -2.38 -0.02 0.63 16 38 H 0.06 0.53 8.01 -2.39 -0.02 0.51 16 39 H 0.08 1.00 7.58 -2.39 -0.02 0.98 16 40 H 0.10 0.49 8.14 -2.38 -0.02 0.47 16 41 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 43 H 0.07 0.80 7.63 -2.38 -0.02 0.78 16 44 H 0.41 4.58 8.58 -92.70 -0.80 3.79 16 45 H 0.06 1.86 7.58 -2.39 -0.02 1.84 16 46 H 0.09 1.46 8.14 -2.39 -0.02 1.45 16 47 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 48 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 49 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 50 H 0.05 1.84 8.08 -2.39 -0.02 1.82 16 51 H 0.36 16.54 5.66 -92.71 -0.52 16.02 16 52 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 53 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 54 H 0.03 1.48 8.14 -2.38 -0.02 1.47 16 55 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 56 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 Total: -1.00 -77.79 426.70 -0.09 -77.88 By element: Atomic # 1 Polarization: 31.14 SS G_CDS: -0.55 Total: 30.59 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: 5.52 Total: -8.15 kcal Atomic # 7 Polarization: -122.40 SS G_CDS: -6.92 Total: -129.32 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.05 Total: -19.44 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 1.90 Total: 48.44 kcal Total: -77.79 -0.09 -77.88 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026519476.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.089 kcal (2) G-P(sol) polarization free energy of solvation -77.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds