Wall clock time and date at job start Tue Mar 31 2020 20:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47008 * 2 1 4 4 C 1.53001 * 109.47317 * 120.00302 * 2 1 3 5 5 H 1.08994 * 109.46887 * 60.00428 * 4 2 1 6 6 C 1.52999 * 109.47200 * 300.00109 * 4 2 1 7 7 N 1.46497 * 109.46992 * 184.99961 * 6 4 2 8 8 C 1.34777 * 119.99525 * 179.97438 * 7 6 4 9 9 O 1.21283 * 120.00463 * 0.02562 * 8 7 6 10 10 C 1.50700 * 119.99675 * 179.72583 * 8 7 6 11 11 H 1.09005 * 109.90940 * 300.62616 * 10 8 7 12 12 C 1.53988 * 109.92082 * 61.73263 * 10 8 7 13 13 C 1.54592 * 105.14406 * 120.57769 * 12 10 8 14 14 C 1.54937 * 102.92114 * 21.95542 * 13 12 10 15 15 N 1.47903 * 109.91617 * 179.32365 * 10 8 7 16 16 C 1.46897 * 111.00345 * 94.80504 * 15 10 8 17 17 C 1.54271 * 110.03023 * 292.90763 * 16 15 10 18 18 C 1.54962 * 104.16241 * 217.13682 * 17 16 15 19 19 C 1.54896 * 102.77802 * 37.88570 * 18 17 16 20 20 C 1.53876 * 110.03591 * 175.69024 * 16 15 10 21 21 N 1.46501 * 109.47053 * 180.02562 * 4 2 1 22 22 C 1.36938 * 120.00226 * 275.00057 * 21 4 2 23 23 H 1.08003 * 119.99566 * 359.97438 * 22 21 4 24 24 C 1.38807 * 120.00578 * 180.02562 * 22 21 4 25 25 N 1.31630 * 119.99516 * 359.97438 * 24 22 21 26 26 Si 1.86792 * 120.00700 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.46746 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.47435 * 119.99882 * 26 24 22 29 29 H 1.48500 * 109.47735 * 240.00484 * 26 24 22 30 30 H 1.09001 * 109.47353 * 299.99599 * 1 2 3 31 31 H 1.09001 * 109.47457 * 60.00275 * 1 2 3 32 32 H 1.09003 * 109.47015 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47353 * 240.00401 * 2 1 3 34 34 H 1.09002 * 109.47459 * 179.97438 * 3 2 1 35 35 H 1.08993 * 109.47409 * 300.00098 * 3 2 1 36 36 H 1.09001 * 109.47212 * 60.00260 * 3 2 1 37 37 H 1.08995 * 109.46838 * 64.99849 * 6 4 2 38 38 H 1.09001 * 109.46617 * 305.00184 * 6 4 2 39 39 H 0.97000 * 120.00580 * 0.02562 * 7 6 4 40 40 H 1.09003 * 110.30954 * 239.49703 * 12 10 8 41 41 H 1.08997 * 110.30813 * 1.55783 * 12 10 8 42 42 H 1.08999 * 110.72366 * 140.31933 * 13 12 10 43 43 H 1.09004 * 110.72239 * 263.60127 * 13 12 10 44 44 H 1.09007 * 110.66463 * 81.02197 * 14 13 12 45 45 H 1.08998 * 110.66832 * 203.98260 * 14 13 12 46 46 H 1.08995 * 110.01898 * 54.29125 * 16 15 10 47 47 H 1.09005 * 110.48499 * 335.78136 * 17 16 15 48 48 H 1.09003 * 110.49029 * 98.42349 * 17 16 15 49 49 H 1.08996 * 110.72131 * 279.57738 * 18 17 16 50 50 H 1.08996 * 110.92900 * 156.29141 * 18 17 16 51 51 H 1.09002 * 110.48947 * 203.40821 * 19 18 17 52 52 H 1.09002 * 110.59664 * 80.81786 * 19 18 17 53 53 H 1.08995 * 110.02961 * 238.56690 * 20 16 15 54 54 H 1.09002 * 110.02502 * 359.97438 * 20 16 15 55 55 H 0.96996 * 119.99960 * 95.00040 * 21 4 2 56 56 H 0.97001 * 119.99721 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -1.7489 1.2491 6 6 1.5300 -0.0002 2.4985 7 7 2.1142 -0.6178 3.6915 8 6 1.8061 -0.1441 4.9151 9 8 1.0448 0.7933 5.0285 10 6 2.4022 -0.7834 6.1427 11 1 2.1223 -1.8360 6.1861 12 6 3.9359 -0.6493 6.1118 13 6 4.2982 0.1389 7.3915 14 6 3.0711 -0.1026 8.3061 15 7 1.9296 -0.0819 7.3560 16 6 0.7556 -0.7537 7.9290 17 6 -0.4478 -0.6217 6.9727 18 6 -1.6633 -0.4376 7.9162 19 6 -1.0885 0.4531 9.0456 20 6 0.3484 -0.0711 9.2465 21 7 3.5050 -0.7207 1.2494 22 6 4.1902 -1.6918 0.5692 23 1 3.6506 -2.4583 0.0328 24 6 5.5783 -1.6916 0.5698 25 7 6.2360 -0.7577 1.2240 26 14 6.5130 -3.0165 -0.3576 27 1 5.5485 -3.9410 -1.0060 28 1 7.3672 -2.3854 -1.3955 29 1 7.3664 -3.7764 0.5909 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 0.4437 -0.0771 2.5444 38 1 1.8183 1.0501 2.4548 39 1 2.7233 -1.3673 3.6009 40 1 4.4023 -1.6343 6.1295 41 1 4.2497 -0.0988 5.2250 42 1 5.2039 -0.2610 7.8474 43 1 4.4122 1.2004 7.1713 44 1 3.1437 -1.0720 8.7992 45 1 2.9769 0.6958 9.0422 46 1 0.9775 -1.8059 8.1066 47 1 -0.3295 0.2499 6.3288 48 1 -0.5613 -1.5261 6.3751 49 1 -1.9932 -1.3981 8.3119 50 1 -2.4810 0.0688 7.4034 51 1 -1.6699 0.3326 9.9597 52 1 -1.0737 1.4990 8.7391 53 1 0.3720 -0.7923 10.0634 54 1 1.0223 0.7584 9.4610 55 1 3.9896 -0.0326 1.7315 56 1 7.2060 -0.7577 1.2247 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271855310.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:27 Heat of formation + Delta-G solvation = -51.988733 kcal Electronic energy + Delta-G solvation = -31567.372304 eV Core-core repulsion = 27703.018879 eV Total energy + Delta-G solvation = -3864.353424 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 337.247 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.44888 -39.75550 -38.58055 -37.59569 -35.12060 -34.97514 -32.42933 -32.16654 -31.00874 -29.44326 -28.41519 -27.91664 -27.59670 -25.69882 -24.22833 -23.26462 -22.44120 -21.48069 -20.73746 -20.49079 -19.95993 -19.27795 -18.18362 -17.60782 -17.24373 -16.79736 -16.51181 -16.00705 -15.89686 -15.36719 -15.26786 -14.99691 -14.93582 -14.86065 -14.61313 -14.21298 -13.96789 -13.87488 -13.75426 -13.64792 -13.56473 -12.89821 -12.79306 -12.68067 -12.57534 -12.43162 -12.31875 -12.19020 -12.04339 -11.96052 -11.91980 -11.85587 -11.84776 -11.78841 -11.72999 -11.57413 -11.49176 -11.33794 -11.17639 -10.88812 -10.51939 -9.83499 -9.33192 -8.94511 -7.87937 -5.15499 1.48875 1.51466 1.59079 1.77194 2.21277 2.59347 3.07522 3.45297 3.52406 3.61566 3.76024 3.81584 3.89795 3.94575 3.95604 4.09735 4.18486 4.24352 4.27107 4.36802 4.45367 4.46971 4.54375 4.54694 4.58844 4.63112 4.69022 4.77176 4.80606 4.85228 4.87701 4.90925 4.96100 5.00305 5.02461 5.05902 5.10353 5.12243 5.17350 5.20564 5.21465 5.25633 5.31020 5.31689 5.36995 5.50578 5.56730 5.59603 5.65592 5.74893 5.88736 6.21957 6.32432 6.72725 7.40513 7.42186 8.12823 8.38357 9.34469 Molecular weight = 337.25amu Principal moments of inertia in cm(-1) A = 0.011983 B = 0.003362 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.150278 B = 8325.770356 C = 9926.874102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.107 4.107 3 C -0.133 4.133 4 C 0.173 3.827 5 H 0.053 0.947 6 C 0.125 3.875 7 N -0.716 5.716 8 C 0.517 3.483 9 O -0.555 6.555 10 C 0.056 3.944 11 H 0.084 0.916 12 C -0.123 4.123 13 C -0.118 4.118 14 C 0.040 3.960 15 N -0.504 5.504 16 C 0.074 3.926 17 C -0.136 4.136 18 C -0.118 4.118 19 C -0.117 4.117 20 C -0.112 4.112 21 N -0.723 5.723 22 C -0.228 4.228 23 H 0.074 0.926 24 C -0.067 4.067 25 N -0.962 5.962 26 Si 0.961 3.039 27 H -0.269 1.269 28 H -0.302 1.302 29 H -0.296 1.296 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.032 0.968 35 H 0.057 0.943 36 H 0.051 0.949 37 H 0.075 0.925 38 H 0.051 0.949 39 H 0.406 0.594 40 H 0.089 0.911 41 H 0.055 0.945 42 H 0.095 0.905 43 H 0.062 0.938 44 H 0.060 0.940 45 H 0.094 0.906 46 H 0.046 0.954 47 H 0.080 0.920 48 H 0.045 0.955 49 H 0.074 0.926 50 H 0.062 0.938 51 H 0.080 0.920 52 H 0.054 0.946 53 H 0.079 0.921 54 H 0.070 0.930 55 H 0.373 0.627 56 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.432 -1.156 15.069 19.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.128 4.128 3 C -0.191 4.191 4 C 0.064 3.936 5 H 0.071 0.929 6 C 0.001 3.999 7 N -0.368 5.368 8 C 0.303 3.697 9 O -0.434 6.434 10 C -0.056 4.056 11 H 0.101 0.899 12 C -0.162 4.162 13 C -0.156 4.156 14 C -0.087 4.087 15 N -0.229 5.229 16 C -0.034 4.034 17 C -0.174 4.174 18 C -0.156 4.156 19 C -0.155 4.155 20 C -0.150 4.150 21 N -0.363 5.363 22 C -0.360 4.360 23 H 0.092 0.908 24 C -0.259 4.259 25 N -0.613 5.613 26 Si 0.792 3.208 27 H -0.193 1.193 28 H -0.230 1.230 29 H -0.223 1.223 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.051 0.949 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.093 0.907 38 H 0.069 0.931 39 H 0.242 0.758 40 H 0.107 0.893 41 H 0.074 0.926 42 H 0.113 0.887 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.112 0.888 46 H 0.064 0.936 47 H 0.099 0.901 48 H 0.064 0.936 49 H 0.093 0.907 50 H 0.081 0.919 51 H 0.099 0.901 52 H 0.073 0.927 53 H 0.098 0.902 54 H 0.089 0.911 55 H 0.206 0.794 56 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -13.124 -0.130 14.929 19.878 hybrid contribution 1.696 -1.409 -0.817 2.351 sum -11.428 -1.538 14.112 18.224 Atomic orbital electron populations 1.21833 0.93891 1.01967 1.02073 1.21606 0.95918 0.96430 0.98883 1.21683 1.00223 0.96159 1.00994 1.20630 0.84004 0.97047 0.91943 0.92892 1.21587 0.97572 0.96723 0.84037 1.45998 1.48881 1.36557 1.05370 1.20739 0.80763 0.83479 0.84693 1.90548 1.36833 1.29253 1.86756 1.22230 0.95937 0.97039 0.90415 0.89881 1.22387 0.91828 1.02241 0.99711 1.22470 0.98490 1.00348 0.94277 1.23281 0.88748 1.01690 0.94933 1.64506 1.05019 1.50157 1.03206 1.22547 0.90400 0.95368 0.95100 1.22742 0.94384 1.02053 0.98205 1.22435 0.96703 1.00143 0.96305 1.22274 0.95536 0.98935 0.98706 1.22193 0.97123 1.00419 0.95259 1.42509 1.00417 1.32490 1.60902 1.19536 0.89110 1.04348 1.22987 0.90780 1.25346 0.97423 1.00706 1.02472 1.69818 1.06369 1.36708 1.48414 0.85254 0.78703 0.79142 0.77703 1.19338 1.23019 1.22338 0.92362 0.91998 0.92269 0.92834 0.94858 0.92439 0.92983 0.90662 0.93097 0.75849 0.89264 0.92588 0.88696 0.91892 0.92147 0.88779 0.93577 0.90132 0.93594 0.90700 0.91896 0.90108 0.92725 0.90192 0.91134 0.79435 0.94366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.61 8.84 71.98 0.64 -2.98 16 2 C -0.11 -3.54 2.91 -10.80 -0.03 -3.57 16 3 C -0.13 -4.53 8.69 71.98 0.63 -3.90 16 4 C 0.17 6.27 2.27 44.99 0.10 6.37 16 5 H 0.05 1.93 8.08 -2.39 -0.02 1.91 16 6 C 0.13 4.26 4.51 86.38 0.39 4.64 16 7 N -0.72 -24.05 5.26 -463.07 -2.44 -26.49 16 8 C 0.52 17.36 6.36 87.66 0.56 17.92 16 9 O -0.56 -21.70 13.65 -3.04 -0.04 -21.74 16 10 C 0.06 1.53 2.62 44.31 0.12 1.65 16 11 H 0.08 2.07 7.66 -2.38 -0.02 2.05 16 12 C -0.12 -3.26 6.47 31.47 0.20 -3.06 16 13 C -0.12 -2.60 7.06 31.80 0.22 -2.38 16 14 C 0.04 0.81 5.67 86.65 0.49 1.30 16 15 N -0.50 -12.87 4.26 -833.19 -3.55 -16.42 16 16 C 0.07 1.66 2.38 45.64 0.11 1.76 16 17 C -0.14 -3.43 5.38 31.70 0.17 -3.26 16 18 C -0.12 -2.32 6.91 31.91 0.22 -2.10 16 19 C -0.12 -2.10 6.83 31.67 0.22 -1.88 16 20 C -0.11 -2.03 6.05 31.32 0.19 -1.84 16 21 N -0.72 -32.95 3.79 -322.94 -1.22 -34.18 16 22 C -0.23 -11.61 9.93 84.03 0.83 -10.78 16 23 H 0.07 3.67 7.83 -2.91 -0.02 3.65 16 24 C -0.07 -3.60 5.50 84.86 0.47 -3.13 16 25 N -0.96 -55.75 13.06 21.65 0.28 -55.47 16 26 Si 0.96 44.31 29.55 68.60 2.03 46.34 16 27 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 28 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 29 H -0.30 -13.69 7.11 99.48 0.71 -12.99 16 30 H 0.06 1.45 6.54 -2.39 -0.02 1.44 16 31 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.03 1.34 7.60 -2.39 -0.02 1.33 16 35 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.05 1.69 6.32 -2.39 -0.02 1.67 16 37 H 0.08 2.38 6.71 -2.39 -0.02 2.36 16 38 H 0.05 1.90 6.17 -2.39 -0.01 1.89 16 39 H 0.41 13.90 8.10 -92.71 -0.75 13.15 16 40 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.06 1.82 7.63 -2.39 -0.02 1.81 16 42 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 44 H 0.06 1.02 8.02 -2.38 -0.02 1.00 16 45 H 0.09 1.70 7.16 -2.39 -0.02 1.68 16 46 H 0.05 0.96 7.96 -2.39 -0.02 0.94 16 47 H 0.08 2.63 5.09 -2.38 -0.01 2.62 16 48 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 49 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 50 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 51 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 52 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 53 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 54 H 0.07 1.34 6.53 -2.39 -0.02 1.32 16 55 H 0.37 18.91 7.80 -92.71 -0.72 18.19 16 56 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 Total: -1.00 -61.72 418.65 -0.04 -61.76 By element: Atomic # 1 Polarization: 52.04 SS G_CDS: -0.62 Total: 51.42 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: 5.52 Total: -5.23 kcal Atomic # 7 Polarization: -125.62 SS G_CDS: -6.93 Total: -132.55 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -0.04 Total: -21.74 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -61.72 -0.04 -61.76 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271855310.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.775 kcal (2) G-P(sol) polarization free energy of solvation -61.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds