Wall clock time and date at job start Tue Mar 31 2020 21:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46968 * 2 1 4 4 C 1.53007 * 109.46594 * 119.99637 * 2 1 3 5 5 H 1.09000 * 109.46814 * 304.71578 * 4 2 1 6 6 C 1.50697 * 109.47039 * 64.72087 * 4 2 1 7 7 O 1.21280 * 120.00070 * 75.30835 * 6 4 2 8 8 N 1.34776 * 120.00080 * 255.30891 * 6 4 2 9 9 C 1.47430 * 125.64359 * 356.61114 * 8 6 4 10 10 C 1.54912 * 104.82961 * 155.91324 * 9 8 6 11 11 C 1.55158 * 101.58209 * 37.00736 * 10 9 8 12 12 C 1.47483 * 125.59644 * 176.63494 * 8 6 4 13 13 H 1.09005 * 109.96203 * 300.33052 * 12 8 6 14 14 C 1.53002 * 110.03069 * 61.64199 * 12 8 6 15 15 N 1.46499 * 109.47074 * 281.07734 * 14 12 8 16 16 C 1.36937 * 119.99815 * 172.83853 * 15 14 12 17 17 H 1.08007 * 120.00242 * 0.02562 * 16 15 14 18 18 C 1.38810 * 119.99998 * 179.97438 * 16 15 14 19 19 N 1.31613 * 120.00052 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99789 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46916 * 90.00470 * 20 18 16 22 22 H 1.48498 * 109.47161 * 209.99878 * 20 18 16 23 23 H 1.48495 * 109.47246 * 330.00506 * 20 18 16 24 24 N 1.46902 * 109.46542 * 184.71954 * 4 2 1 25 25 C 1.46851 * 111.00172 * 299.20793 * 24 4 2 26 26 C 1.53029 * 109.52399 * 174.16246 * 25 24 4 27 27 C 1.53118 * 109.27619 * 59.18418 * 26 25 24 28 28 C 1.53122 * 109.16167 * 302.34158 * 27 26 25 29 29 C 1.46846 * 110.99417 * 175.00301 * 24 4 2 30 30 H 1.09002 * 109.47346 * 295.07301 * 1 2 3 31 31 H 1.09007 * 109.46480 * 55.06923 * 1 2 3 32 32 H 1.09000 * 109.46935 * 175.06470 * 1 2 3 33 33 H 1.08992 * 109.47173 * 239.99740 * 2 1 3 34 34 H 1.08999 * 109.46545 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.46815 * 299.99203 * 3 2 1 36 36 H 1.08992 * 109.47386 * 59.99870 * 3 2 1 37 37 H 1.09001 * 110.36519 * 37.07624 * 9 8 6 38 38 H 1.08994 * 110.36614 * 274.75006 * 9 8 6 39 39 H 1.09007 * 111.00316 * 278.93423 * 10 9 8 40 40 H 1.09003 * 111.03676 * 155.09645 * 10 9 8 41 41 H 1.09000 * 110.71655 * 82.86307 * 11 10 9 42 42 H 1.09006 * 110.72003 * 205.95825 * 11 10 9 43 43 H 1.08998 * 109.46815 * 41.07973 * 14 12 8 44 44 H 1.09000 * 109.47055 * 161.07783 * 14 12 8 45 45 H 0.96997 * 120.00130 * 352.83883 * 15 14 12 46 46 H 0.97004 * 119.99977 * 179.97438 * 19 18 16 47 47 H 1.08996 * 109.46050 * 294.18204 * 25 24 4 48 48 H 1.08998 * 109.45801 * 54.14588 * 25 24 4 49 49 H 1.08993 * 109.50739 * 299.24336 * 26 25 24 50 50 H 1.08999 * 109.50375 * 179.12026 * 26 25 24 51 51 H 1.09006 * 109.52226 * 182.44377 * 27 26 25 52 52 H 1.08998 * 109.58382 * 62.27998 * 27 26 25 53 53 H 1.09001 * 109.50168 * 297.71759 * 28 27 26 54 54 H 1.08998 * 109.53983 * 177.62055 * 28 27 26 55 55 H 1.08995 * 109.46257 * 305.84805 * 29 24 4 56 56 H 1.08995 * 109.46373 * 65.83575 * 29 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 1 1.6092 -0.2584 2.1373 6 6 1.6353 -2.1717 1.1924 7 8 2.2192 -2.9356 0.4531 8 7 0.6245 -2.6202 1.9629 9 6 -0.1208 -1.8214 2.9528 10 6 -1.4883 -2.5361 3.0904 11 6 -1.0734 -4.0269 2.9770 12 6 0.0822 -3.9916 1.9547 13 1 -0.2939 -4.2372 0.9615 14 6 1.1693 -4.9876 2.3637 15 7 2.0526 -5.2419 1.2230 16 6 3.1882 -5.9889 1.3896 17 1 3.4323 -6.3909 2.3619 18 6 4.0249 -6.2304 0.3087 19 7 3.7272 -5.7409 -0.8762 20 14 5.5743 -7.2488 0.5362 21 1 5.2643 -8.6815 0.2983 22 1 6.6085 -6.7992 -0.4299 23 1 6.0817 -7.0755 1.9210 24 7 3.5046 -0.6233 1.3077 25 6 4.1214 -1.2544 0.1340 26 6 5.6314 -1.0072 0.1547 27 6 6.2217 -1.5918 1.4410 28 6 5.5285 -0.9530 2.6477 29 6 4.0213 -1.2018 2.5546 30 1 -0.3634 0.4355 0.9308 31 1 -0.3632 0.5885 -0.8426 32 1 -0.3633 -1.0239 -0.0884 33 1 1.8934 -0.5138 -0.8899 34 1 3.1300 1.4424 0.0005 35 1 1.6768 1.9563 -0.8901 36 1 1.6767 1.9564 0.8899 37 1 -0.2599 -0.8027 2.5909 38 1 0.4029 -1.8172 3.9086 39 1 -2.1597 -2.2546 2.2791 40 1 -1.9420 -2.3295 4.0598 41 1 -0.7263 -4.4048 3.9386 42 1 -1.9008 -4.6301 2.6030 43 1 1.7501 -4.5733 3.1878 44 1 0.7056 -5.9221 2.6797 45 1 1.8332 -4.8812 0.3497 46 1 4.3121 -5.9094 -1.6315 47 1 3.9286 -2.3270 0.1550 48 1 3.6958 -0.8269 -0.7739 49 1 5.8253 0.0648 0.1198 50 1 6.0910 -1.4891 -0.7083 51 1 7.2902 -1.3799 1.4806 52 1 6.0633 -2.6700 1.4586 53 1 5.7207 0.1199 2.6519 54 1 5.9143 -1.3954 3.5661 55 1 3.5232 -0.7359 3.4048 56 1 3.8292 -2.2746 2.5642 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666486607.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:20 Heat of formation + Delta-G solvation = -31.962818 kcal Electronic energy + Delta-G solvation = -33707.772917 eV Core-core repulsion = 29844.287882 eV Total energy + Delta-G solvation = -3863.485035 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 337.247 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.79212 -39.81585 -37.96629 -36.82131 -36.10003 -33.40512 -33.28622 -32.51325 -31.62796 -30.33469 -28.11042 -27.72091 -26.66188 -24.72963 -24.22312 -24.09979 -23.06870 -22.13426 -20.94614 -20.68445 -19.59319 -19.10364 -18.01049 -17.54071 -17.05849 -16.67659 -16.41143 -15.76565 -15.61052 -15.25246 -15.22260 -14.95388 -14.82059 -14.68139 -14.52978 -14.32266 -14.01356 -13.96819 -13.68794 -13.50396 -13.20842 -13.13244 -13.06473 -12.91474 -12.89119 -12.84578 -12.68084 -12.33049 -12.24817 -12.07923 -11.94355 -11.88024 -11.84679 -11.66909 -11.62880 -11.60103 -11.50754 -11.25621 -11.02562 -10.91925 -10.76795 -9.44649 -8.97301 -8.79563 -7.82907 -5.08618 1.35925 1.38732 1.46107 1.92371 2.18393 2.54829 2.88986 3.45110 3.55795 3.71562 3.76289 3.87844 3.88103 4.00264 4.02994 4.04412 4.07437 4.29389 4.32637 4.37052 4.40803 4.42668 4.48865 4.52535 4.59150 4.65963 4.71077 4.77520 4.79822 4.82833 4.87542 4.89080 4.92118 4.97996 4.98970 5.03336 5.04239 5.11011 5.15211 5.16673 5.17769 5.23291 5.27646 5.30421 5.40605 5.44109 5.45191 5.52776 5.61365 5.67850 6.03865 6.07016 6.33610 6.82189 7.40596 7.60566 8.30012 8.55501 9.38369 Molecular weight = 337.25amu Principal moments of inertia in cm(-1) A = 0.008718 B = 0.006327 C = 0.004366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3211.141094 B = 4424.075315 C = 6411.634271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.080 4.080 3 C -0.123 4.123 4 C 0.084 3.916 5 H 0.116 0.884 6 C 0.473 3.527 7 O -0.518 6.518 8 N -0.617 5.617 9 C 0.090 3.910 10 C -0.115 4.115 11 C -0.116 4.116 12 C 0.132 3.868 13 H 0.042 0.958 14 C 0.149 3.851 15 N -0.724 5.724 16 C -0.238 4.238 17 H 0.056 0.944 18 C -0.066 4.066 19 N -0.948 5.948 20 Si 0.957 3.043 21 H -0.285 1.285 22 H -0.297 1.297 23 H -0.277 1.277 24 N -0.488 5.488 25 C 0.038 3.962 26 C -0.106 4.106 27 C -0.122 4.122 28 C -0.101 4.101 29 C 0.052 3.948 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.031 0.969 33 H 0.042 0.958 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.096 0.904 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.114 0.886 41 H 0.081 0.919 42 H 0.091 0.909 43 H 0.003 0.997 44 H 0.018 0.982 45 H 0.383 0.617 46 H 0.241 0.759 47 H 0.043 0.957 48 H 0.063 0.937 49 H 0.086 0.914 50 H 0.048 0.952 51 H 0.078 0.922 52 H 0.018 0.982 53 H 0.092 0.908 54 H 0.070 0.930 55 H 0.092 0.908 56 H -0.008 1.008 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.550 18.862 9.920 23.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.099 4.099 3 C -0.181 4.181 4 C -0.028 4.028 5 H 0.134 0.866 6 C 0.260 3.740 7 O -0.392 6.392 8 N -0.354 5.354 9 C -0.032 4.032 10 C -0.153 4.153 11 C -0.155 4.155 12 C 0.027 3.973 13 H 0.061 0.939 14 C 0.021 3.979 15 N -0.370 5.370 16 C -0.371 4.371 17 H 0.074 0.926 18 C -0.259 4.259 19 N -0.598 5.598 20 Si 0.787 3.213 21 H -0.213 1.213 22 H -0.224 1.224 23 H -0.202 1.202 24 N -0.210 5.210 25 C -0.090 4.090 26 C -0.144 4.144 27 C -0.160 4.160 28 C -0.138 4.138 29 C -0.076 4.076 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.051 0.949 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.114 0.886 38 H 0.087 0.913 39 H 0.101 0.899 40 H 0.132 0.868 41 H 0.100 0.900 42 H 0.110 0.890 43 H 0.020 0.980 44 H 0.035 0.965 45 H 0.220 0.780 46 H 0.050 0.950 47 H 0.061 0.939 48 H 0.082 0.918 49 H 0.104 0.896 50 H 0.066 0.934 51 H 0.097 0.903 52 H 0.037 0.963 53 H 0.111 0.889 54 H 0.089 0.911 55 H 0.111 0.889 56 H 0.010 0.990 Dipole moment (debyes) X Y Z Total from point charges -8.893 18.903 9.538 22.965 hybrid contribution 0.992 -2.390 -0.691 2.678 sum -7.901 16.513 8.847 20.332 Atomic orbital electron populations 1.21832 0.93340 1.00993 1.03585 1.21044 0.96651 0.97606 0.94597 1.21605 1.01591 0.92684 1.02195 1.22067 0.89397 0.89417 1.01915 0.86613 1.22313 0.79233 0.92183 0.80265 1.90870 1.50658 1.57985 1.39658 1.48981 1.34853 1.11179 1.40392 1.22619 0.92591 0.96230 0.91740 1.22755 0.95367 0.92572 1.04594 1.22607 0.95658 0.99077 0.98129 1.21826 0.93610 0.82772 0.99052 0.93945 1.21087 0.91264 0.95258 0.90280 1.42728 1.24350 1.61602 1.08356 1.19404 1.00403 1.23267 0.94032 0.92562 1.25350 1.01766 1.03109 0.95668 1.69919 1.39216 1.50816 0.99859 0.85389 0.80414 0.78728 0.76774 1.21256 1.22390 1.20220 1.62592 1.02562 1.53806 1.02089 1.22362 0.94662 0.99195 0.92756 1.21496 0.94286 1.01551 0.97056 1.21552 1.00394 0.98123 0.95908 1.21474 0.92851 1.02150 0.97350 1.22130 0.97341 0.95504 0.92620 0.89998 0.91051 0.94946 0.93965 0.92462 0.92198 0.91069 0.88627 0.91288 0.89925 0.86793 0.90009 0.89011 0.97954 0.96487 0.77957 0.94969 0.93862 0.91815 0.89569 0.93369 0.90292 0.96329 0.88926 0.91108 0.88946 0.98950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 8.55 71.98 0.62 -2.25 16 2 C -0.08 -2.02 1.99 -10.79 -0.02 -2.04 16 3 C -0.12 -2.43 8.98 71.98 0.65 -1.78 16 4 C 0.08 2.39 1.48 44.17 0.07 2.46 16 5 H 0.12 2.60 6.32 -2.39 -0.02 2.59 16 6 C 0.47 17.72 4.58 87.66 0.40 18.12 16 7 O -0.52 -26.25 10.02 -3.03 -0.03 -26.28 16 8 N -0.62 -19.38 3.08 -786.95 -2.42 -21.80 16 9 C 0.09 1.73 6.34 86.85 0.55 2.28 16 10 C -0.12 -1.72 7.09 31.99 0.23 -1.49 16 11 C -0.12 -2.55 6.41 31.78 0.20 -2.35 16 12 C 0.13 4.57 3.08 45.25 0.14 4.70 16 13 H 0.04 1.71 8.05 -2.38 -0.02 1.69 16 14 C 0.15 6.71 5.61 86.38 0.48 7.20 16 15 N -0.72 -41.58 4.12 -343.45 -1.42 -42.99 16 16 C -0.24 -14.91 9.99 84.03 0.84 -14.07 16 17 H 0.06 3.45 7.83 -2.91 -0.02 3.42 16 18 C -0.07 -4.17 5.50 84.86 0.47 -3.71 16 19 N -0.95 -63.77 13.06 21.65 0.28 -63.48 16 20 Si 0.96 50.85 29.55 68.60 2.03 52.88 16 21 H -0.29 -14.69 7.11 99.48 0.71 -13.98 16 22 H -0.30 -15.85 7.11 99.48 0.71 -15.14 16 23 H -0.28 -14.11 7.11 99.48 0.71 -13.40 16 24 N -0.49 -15.08 3.68 -875.52 -3.22 -18.31 16 25 C 0.04 1.46 4.44 86.32 0.38 1.84 16 26 C -0.11 -3.56 6.09 30.64 0.19 -3.38 16 27 C -0.12 -4.06 6.00 30.67 0.18 -3.88 16 28 C -0.10 -2.81 6.09 30.65 0.19 -2.62 16 29 C 0.05 1.65 5.13 86.33 0.44 2.10 16 30 H 0.08 1.21 7.07 -2.39 -0.02 1.19 16 31 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 32 H 0.03 0.82 7.53 -2.39 -0.02 0.80 16 33 H 0.04 1.39 6.55 -2.39 -0.02 1.38 16 34 H 0.06 1.28 7.42 -2.39 -0.02 1.27 16 35 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.10 1.40 5.60 -2.39 -0.01 1.39 16 38 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 40 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.08 1.72 7.85 -2.39 -0.02 1.71 16 42 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 43 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 44 H 0.02 0.77 8.05 -2.39 -0.02 0.75 16 45 H 0.38 24.04 5.46 -92.71 -0.51 23.53 16 46 H 0.24 15.85 8.31 -92.71 -0.77 15.08 16 47 H 0.04 2.27 5.26 -2.39 -0.01 2.25 16 48 H 0.06 2.43 6.13 -2.39 -0.01 2.42 16 49 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 50 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 51 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 52 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 53 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 54 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 55 H 0.09 2.37 8.08 -2.39 -0.02 2.35 16 56 H -0.01 -0.35 7.44 -2.39 -0.02 -0.36 16 Total: -1.00 -81.96 409.13 1.55 -80.41 By element: Atomic # 1 Polarization: 38.10 SS G_CDS: 0.33 Total: 38.43 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: 6.00 Total: 1.15 kcal Atomic # 7 Polarization: -139.81 SS G_CDS: -6.78 Total: -146.59 kcal Atomic # 8 Polarization: -26.25 SS G_CDS: -0.03 Total: -26.28 kcal Atomic # 14 Polarization: 50.85 SS G_CDS: 2.03 Total: 52.88 kcal Total: -81.96 1.55 -80.41 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666486607.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.445 kcal (2) G-P(sol) polarization free energy of solvation -81.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds