Wall clock time and date at job start Tue Mar 31 2020 20:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.46939 * 2 1 4 4 C 1.50700 * 109.46783 * 298.57601 * 3 2 1 5 5 O 1.21278 * 119.99528 * 112.56920 * 4 3 2 6 6 N 1.34777 * 120.00467 * 292.56886 * 4 3 2 7 7 C 1.46500 * 120.00157 * 175.08474 * 6 4 3 8 8 C 1.52997 * 109.47042 * 179.97438 * 7 6 4 9 9 N 1.46896 * 109.46935 * 179.97438 * 8 7 6 10 10 C 1.46898 * 111.00418 * 294.29824 * 9 8 7 11 11 C 1.53234 * 109.34509 * 172.74493 * 10 9 8 12 12 N 1.47081 * 108.51984 * 53.83175 * 11 10 9 13 13 C 1.36935 * 120.88266 * 128.83184 * 12 11 10 14 14 H 1.07995 * 120.00312 * 210.17006 * 13 12 11 15 15 C 1.38812 * 119.99771 * 30.17891 * 13 12 11 16 16 N 1.31621 * 120.00171 * 9.74334 * 15 13 12 17 17 Si 1.86798 * 119.99864 * 189.74865 * 15 13 12 18 18 H 1.48500 * 109.47311 * 89.99844 * 17 15 13 19 19 H 1.48509 * 109.46873 * 209.99668 * 17 15 13 20 20 H 1.48494 * 109.47196 * 329.99324 * 17 15 13 21 21 C 1.47080 * 118.23655 * 308.81689 * 12 11 10 22 22 C 1.46900 * 110.99960 * 169.99534 * 9 8 7 23 23 C 1.53000 * 109.47251 * 58.57994 * 3 2 1 24 24 C 1.53003 * 109.46901 * 180.02562 * 23 3 2 25 25 C 1.53007 * 109.46914 * 300.00049 * 24 23 3 26 26 C 1.52999 * 109.47005 * 60.00216 * 25 24 23 27 27 C 1.52998 * 109.47212 * 299.99337 * 26 25 24 28 28 H 1.08999 * 109.46340 * 62.29540 * 1 2 3 29 29 H 1.08994 * 109.47105 * 182.29034 * 1 2 3 30 30 H 1.08993 * 109.47325 * 302.29579 * 1 2 3 31 31 H 1.08996 * 109.47570 * 239.99761 * 2 1 3 32 32 H 1.09005 * 109.46680 * 119.99231 * 2 1 3 33 33 H 0.96998 * 119.99541 * 355.08048 * 6 4 3 34 34 H 1.09003 * 109.46593 * 300.00021 * 7 6 4 35 35 H 1.09000 * 109.47211 * 59.99474 * 7 6 4 36 36 H 1.09002 * 109.46931 * 299.99508 * 8 7 6 37 37 H 1.09000 * 109.47538 * 59.99685 * 8 7 6 38 38 H 1.08997 * 109.49127 * 292.71473 * 10 9 8 39 39 H 1.09003 * 109.48969 * 52.78787 * 10 9 8 40 40 H 1.08997 * 109.62936 * 294.12839 * 11 10 9 41 41 H 1.09000 * 109.63127 * 173.54158 * 11 10 9 42 42 H 0.97000 * 120.00177 * 180.02562 * 16 15 13 43 43 H 1.08998 * 109.63101 * 291.46910 * 21 12 11 44 44 H 1.09006 * 109.78754 * 170.98712 * 21 12 11 45 45 H 1.08998 * 109.49876 * 307.21929 * 22 9 8 46 46 H 1.09004 * 109.49436 * 67.29427 * 22 9 8 47 47 H 1.08999 * 109.47141 * 60.00076 * 23 3 2 48 48 H 1.08998 * 109.46795 * 299.99733 * 23 3 2 49 49 H 1.09000 * 109.46911 * 180.02562 * 24 23 3 50 50 H 1.09003 * 109.46931 * 59.99646 * 24 23 3 51 51 H 1.08997 * 109.46639 * 180.02562 * 25 24 23 52 52 H 1.08999 * 109.47202 * 300.00014 * 25 24 23 53 53 H 1.08995 * 109.47431 * 60.00360 * 26 25 24 54 54 H 1.09010 * 109.46808 * 180.02562 * 26 25 24 55 55 H 1.08999 * 109.47414 * 300.00458 * 27 26 25 56 56 H 1.09001 * 109.47452 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.5667 2.1426 -1.2478 5 8 0.7604 3.0451 -1.1679 6 7 2.0392 1.7659 -2.4524 7 6 1.5005 2.3715 -3.6727 8 6 2.2037 1.7729 -4.8925 9 7 1.6630 2.3797 -6.1162 10 6 0.2520 2.0173 -6.3046 11 6 -0.3226 2.8099 -7.4834 12 7 0.5373 2.5918 -8.6565 13 6 0.0041 2.2031 -9.8564 14 1 0.5859 1.5967 -10.5347 15 6 -1.2841 2.5887 -10.2008 16 7 -1.9217 3.4794 -9.4712 17 14 -2.1128 1.8432 -11.6998 18 1 -2.8528 0.6196 -11.2991 19 1 -3.0610 2.8269 -12.2817 20 1 -1.0834 1.4905 -12.7103 21 6 1.9852 2.8026 -8.5067 22 6 2.4690 2.0104 -7.2875 23 6 1.5010 2.1741 1.2310 24 6 2.0105 3.6168 1.2306 25 6 3.5402 3.6174 1.2659 26 6 4.0791 2.8859 0.0349 27 6 3.5697 1.4432 0.0354 28 1 -0.3632 0.4778 -0.9099 29 1 -0.3633 -1.0268 0.0411 30 1 -0.3633 0.5490 0.8686 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.7361 1.0937 -2.5114 34 1 0.4306 2.1722 -3.7354 35 1 1.6687 3.4482 -3.6488 36 1 3.2734 1.9726 -4.8296 37 1 2.0359 0.6961 -4.9166 38 1 0.1752 0.9500 -6.5118 39 1 -0.3081 2.2537 -5.3998 40 1 -0.3423 3.8712 -7.2362 41 1 -1.3329 2.4627 -7.7004 42 1 -2.8221 3.7486 -9.7117 43 1 2.1874 3.8633 -8.3579 44 1 2.5034 2.4530 -9.3997 45 1 3.5168 2.2416 -7.0957 46 1 2.3614 0.9431 -7.4812 47 1 1.8434 1.6677 2.1334 48 1 0.4114 2.1740 1.2054 49 1 1.6269 4.1378 2.1078 50 1 1.6678 4.1229 0.3280 51 1 3.9031 4.6452 1.2661 52 1 3.8830 3.1113 2.1684 53 1 3.7364 3.3921 -0.8675 54 1 5.1689 2.8860 0.0604 55 1 3.9125 0.9371 0.9378 56 1 3.9539 0.9219 -0.8414 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713079110.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:14 Heat of formation + Delta-G solvation = -51.902212 kcal Electronic energy + Delta-G solvation = -30964.625594 eV Core-core repulsion = 27100.275922 eV Total energy + Delta-G solvation = -3864.349672 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 337.247 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.89939 -39.84455 -38.36814 -36.80787 -35.52910 -34.92931 -33.30586 -31.76960 -31.66196 -30.37128 -29.81870 -27.64342 -25.30867 -24.81126 -24.29791 -23.78032 -23.17180 -22.44037 -21.34780 -20.88160 -20.19227 -18.73457 -17.44961 -17.38843 -16.85977 -16.78879 -16.33161 -16.05396 -15.88213 -15.39620 -15.28490 -15.23662 -15.12145 -14.90533 -14.72727 -14.65722 -14.27972 -14.21164 -13.89737 -13.58249 -13.22816 -13.04864 -12.95308 -12.90615 -12.78768 -12.67992 -12.58518 -12.49577 -12.29375 -12.23475 -12.04527 -11.93065 -11.91415 -11.87152 -11.58473 -11.51570 -11.39812 -10.96181 -10.85354 -10.61679 -10.51056 -10.02151 -9.31000 -8.65033 -7.87791 -5.39197 1.45619 1.46440 1.56007 1.73201 2.11237 2.49056 3.08362 3.28915 3.59472 3.62420 3.67193 3.79093 3.84789 4.04522 4.08079 4.19565 4.24210 4.28806 4.33659 4.34862 4.43083 4.44456 4.50489 4.53538 4.61795 4.63759 4.68386 4.69999 4.71560 4.80992 4.82262 4.91803 4.96076 4.99235 5.03781 5.06979 5.07856 5.13096 5.19238 5.19972 5.27198 5.31828 5.32635 5.36667 5.38976 5.43068 5.51025 5.59582 5.64196 5.68130 6.13137 6.22197 6.38354 6.61146 7.12691 7.34212 7.81898 8.37610 9.18475 Molecular weight = 337.25amu Principal moments of inertia in cm(-1) A = 0.021211 B = 0.002220 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.761610 B =12612.025082 C =12999.735048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.106 4.106 3 C -0.070 4.070 4 C 0.524 3.476 5 O -0.580 6.580 6 N -0.717 5.717 7 C 0.133 3.867 8 C 0.056 3.944 9 N -0.543 5.543 10 C 0.051 3.949 11 C 0.187 3.813 12 N -0.615 5.615 13 C -0.263 4.263 14 H 0.070 0.930 15 C -0.054 4.054 16 N -0.939 5.939 17 Si 0.973 3.027 18 H -0.284 1.284 19 H -0.295 1.295 20 H -0.266 1.266 21 C 0.142 3.858 22 C 0.058 3.942 23 C -0.094 4.094 24 C -0.133 4.133 25 C -0.116 4.116 26 C -0.125 4.125 27 C -0.104 4.104 28 H 0.024 0.976 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.077 0.923 32 H 0.101 0.899 33 H 0.413 0.587 34 H 0.045 0.955 35 H 0.053 0.947 36 H 0.101 0.899 37 H 0.046 0.954 38 H 0.023 0.977 39 H 0.071 0.929 40 H -0.007 1.007 41 H 0.057 0.943 42 H 0.250 0.750 43 H 0.014 0.986 44 H 0.064 0.936 45 H 0.100 0.900 46 H 0.029 0.971 47 H 0.091 0.909 48 H 0.052 0.948 49 H 0.060 0.940 50 H 0.047 0.953 51 H 0.054 0.946 52 H 0.080 0.920 53 H 0.036 0.964 54 H 0.082 0.918 55 H 0.099 0.901 56 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.302 -9.494 24.597 30.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.144 4.144 3 C -0.073 4.073 4 C 0.312 3.688 5 O -0.459 6.459 6 N -0.370 5.370 7 C 0.008 3.992 8 C -0.072 4.072 9 N -0.268 5.268 10 C -0.079 4.079 11 C 0.061 3.939 12 N -0.339 5.339 13 C -0.393 4.393 14 H 0.087 0.913 15 C -0.249 4.249 16 N -0.586 5.586 17 Si 0.801 3.199 18 H -0.211 1.211 19 H -0.222 1.222 20 H -0.190 1.190 21 C 0.016 3.984 22 C -0.071 4.071 23 C -0.131 4.131 24 C -0.171 4.171 25 C -0.153 4.153 26 C -0.163 4.163 27 C -0.142 4.142 28 H 0.043 0.957 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.096 0.904 32 H 0.119 0.881 33 H 0.250 0.750 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.119 0.881 37 H 0.064 0.936 38 H 0.041 0.959 39 H 0.090 0.910 40 H 0.011 0.989 41 H 0.075 0.925 42 H 0.059 0.941 43 H 0.032 0.968 44 H 0.082 0.918 45 H 0.119 0.881 46 H 0.047 0.953 47 H 0.110 0.890 48 H 0.071 0.929 49 H 0.079 0.921 50 H 0.066 0.934 51 H 0.073 0.927 52 H 0.098 0.902 53 H 0.055 0.945 54 H 0.100 0.900 55 H 0.118 0.882 56 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 14.606 -8.293 24.623 29.806 hybrid contribution -1.081 -0.641 -1.322 1.824 sum 13.526 -8.934 23.301 28.384 Atomic orbital electron populations 1.21878 0.96726 1.02109 1.00964 1.21606 0.95281 0.92870 1.04603 1.20965 0.98139 0.96462 0.91722 1.21091 0.79984 0.82293 0.85425 1.90663 1.36169 1.31825 1.87260 1.45820 1.42091 1.44049 1.05030 1.21032 0.97206 0.97536 0.83442 1.22174 1.00190 0.96661 0.88177 1.61749 1.02269 1.59808 1.03007 1.22606 0.89360 0.97065 0.98837 1.20586 0.94256 0.94582 0.84478 1.44368 1.02403 1.79742 1.07434 1.19555 0.98861 1.24967 0.95931 0.91263 1.25984 0.99939 0.97785 1.01177 1.70158 1.12991 1.33566 1.41849 0.85182 0.78170 0.77169 0.79396 1.21116 1.22170 1.19044 1.21166 0.84487 0.96556 0.96173 1.22474 0.97371 0.97228 0.90004 1.21435 1.00086 0.95156 0.96438 1.21693 0.96465 0.97295 1.01640 1.21532 0.94598 1.00372 0.98841 1.21594 1.01235 0.95847 0.97590 1.21677 0.90692 0.97055 1.04742 0.95672 0.91216 0.92259 0.90424 0.88070 0.75041 0.93661 0.92866 0.88075 0.93569 0.95923 0.91030 0.98862 0.92515 0.94108 0.96829 0.91769 0.88144 0.95308 0.89019 0.92881 0.92129 0.93384 0.92687 0.90165 0.94522 0.89966 0.88236 0.89962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 9.32 71.98 0.67 -1.92 16 2 C -0.11 -1.21 4.97 30.60 0.15 -1.06 16 3 C -0.07 -1.03 0.44 -52.92 -0.02 -1.06 16 4 C 0.52 12.13 3.68 87.66 0.32 12.45 16 5 O -0.58 -19.23 13.98 -3.02 -0.04 -19.27 16 6 N -0.72 -14.30 5.43 -463.06 -2.52 -16.82 16 7 C 0.13 3.50 5.61 86.38 0.48 3.98 16 8 C 0.06 1.35 5.08 86.30 0.44 1.79 16 9 N -0.54 -18.34 4.63 -895.28 -4.14 -22.48 16 10 C 0.05 2.02 5.46 86.38 0.47 2.50 16 11 C 0.19 9.61 5.36 86.35 0.46 10.07 16 12 N -0.62 -32.11 3.03 -698.14 -2.12 -34.22 16 13 C -0.26 -14.76 9.63 84.03 0.81 -13.95 16 14 H 0.07 3.73 7.85 -2.91 -0.02 3.71 16 15 C -0.05 -3.08 5.09 84.86 0.43 -2.65 16 16 N -0.94 -57.36 10.98 21.65 0.24 -57.13 16 17 Si 0.97 45.59 29.56 68.60 2.03 47.62 16 18 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 19 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 20 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 21 C 0.14 5.98 6.69 86.35 0.58 6.56 16 22 C 0.06 1.91 5.62 86.38 0.49 2.39 16 23 C -0.09 -1.54 3.97 30.60 0.12 -1.42 16 24 C -0.13 -2.57 5.63 30.60 0.17 -2.40 16 25 C -0.12 -1.66 5.92 30.60 0.18 -1.48 16 26 C -0.13 -1.67 5.70 30.59 0.17 -1.49 16 27 C -0.10 -1.00 4.57 30.60 0.14 -0.87 16 28 H 0.02 0.55 7.34 -2.39 -0.02 0.53 16 29 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.06 0.98 6.28 -2.39 -0.02 0.97 16 31 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 33 H 0.41 5.33 7.35 -92.71 -0.68 4.65 16 34 H 0.05 1.42 6.40 -2.39 -0.02 1.40 16 35 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.10 1.93 7.97 -2.39 -0.02 1.91 16 37 H 0.05 1.03 8.12 -2.39 -0.02 1.01 16 38 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.07 2.72 6.16 -2.39 -0.01 2.70 16 40 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 41 H 0.06 3.27 6.16 -2.39 -0.01 3.25 16 42 H 0.25 14.77 8.31 -92.71 -0.77 13.99 16 43 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.06 2.55 7.96 -2.38 -0.02 2.53 16 45 H 0.10 2.57 7.99 -2.39 -0.02 2.55 16 46 H 0.03 0.96 8.14 -2.38 -0.02 0.94 16 47 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 48 H 0.05 1.09 6.23 -2.39 -0.01 1.07 16 49 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 50 H 0.05 1.30 5.79 -2.39 -0.01 1.29 16 51 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 52 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 53 H 0.04 0.69 7.22 -2.39 -0.02 0.67 16 54 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 55 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 56 H 0.08 0.54 7.10 -2.39 -0.02 0.52 16 Total: -1.00 -73.44 409.88 -0.32 -73.76 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: 0.16 Total: 17.08 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: 6.07 Total: 11.46 kcal Atomic # 7 Polarization: -122.11 SS G_CDS: -8.54 Total: -130.65 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -0.04 Total: -19.27 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -73.44 -0.32 -73.76 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713079110.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.856 kcal (2) G-P(sol) polarization free energy of solvation -73.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds