Wall clock time and date at job start Tue Mar 31 2020 21:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47380 * 2 1 4 4 C 1.53005 * 109.47068 * 119.99659 * 2 1 3 5 5 H 1.08993 * 109.47500 * 180.83642 * 4 2 1 6 6 C 1.50697 * 109.46955 * 300.84083 * 4 2 1 7 7 O 1.21286 * 120.00189 * 104.51729 * 6 4 2 8 8 N 1.34776 * 119.99931 * 284.50493 * 6 4 2 9 9 C 1.46505 * 119.99928 * 175.70118 * 8 6 4 10 10 C 1.53003 * 109.47033 * 180.02562 * 9 8 6 11 11 H 1.08996 * 109.58606 * 61.07416 * 10 9 8 12 12 C 1.53193 * 109.58565 * 181.36095 * 10 9 8 13 13 C 1.53042 * 109.31307 * 174.41897 * 12 10 9 14 14 C 1.53041 * 109.53936 * 298.63631 * 13 12 10 15 15 C 1.53192 * 109.31144 * 61.36048 * 14 13 12 16 16 N 1.46926 * 109.58583 * 300.79322 * 10 9 8 17 17 C 1.36944 * 120.62809 * 6.60404 * 16 10 9 18 18 H 1.07996 * 119.99829 * 329.70252 * 17 16 10 19 19 C 1.38818 * 119.99552 * 149.70703 * 17 16 10 20 20 N 1.31616 * 119.99943 * 348.01741 * 19 17 16 21 21 Si 1.86795 * 119.99830 * 168.01838 * 19 17 16 22 22 H 1.48502 * 109.47238 * 89.99657 * 21 19 17 23 23 H 1.48491 * 109.47489 * 209.99948 * 21 19 17 24 24 H 1.48501 * 109.47348 * 330.00151 * 21 19 17 25 25 N 1.46903 * 109.46799 * 60.84084 * 4 2 1 26 26 C 1.48525 * 111.00196 * 57.60003 * 25 4 2 27 27 C 1.54940 * 103.22588 * 159.72032 * 26 25 4 28 28 C 1.54588 * 102.92195 * 322.58945 * 27 26 25 29 29 C 1.47904 * 110.99834 * 175.00197 * 25 4 2 30 30 H 1.09005 * 109.47549 * 300.00273 * 1 2 3 31 31 H 1.09003 * 109.46968 * 59.99877 * 1 2 3 32 32 H 1.08998 * 109.47315 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47648 * 239.99594 * 2 1 3 34 34 H 1.09001 * 109.47319 * 67.01381 * 3 2 1 35 35 H 1.09000 * 109.47481 * 187.01624 * 3 2 1 36 36 H 1.08997 * 109.47011 * 307.01539 * 3 2 1 37 37 H 0.96998 * 120.00326 * 355.98278 * 8 6 4 38 38 H 1.08999 * 109.47420 * 300.00403 * 9 8 6 39 39 H 1.08998 * 109.46806 * 60.00458 * 9 8 6 40 40 H 1.09000 * 109.49634 * 294.37565 * 12 10 9 41 41 H 1.09001 * 109.49558 * 54.43469 * 12 10 9 42 42 H 1.09003 * 109.45675 * 58.65274 * 13 12 10 43 43 H 1.08994 * 109.45875 * 178.62615 * 13 12 10 44 44 H 1.08999 * 109.49684 * 181.31558 * 14 13 12 45 45 H 1.09005 * 109.49561 * 301.41546 * 14 13 12 46 46 H 1.09005 * 109.58304 * 65.15656 * 15 14 13 47 47 H 1.08995 * 109.58850 * 185.43171 * 15 14 13 48 48 H 0.97005 * 119.99638 * 179.97438 * 20 19 17 49 49 H 1.08995 * 110.67032 * 278.15984 * 26 25 4 50 50 H 1.09002 * 110.66871 * 41.28705 * 26 25 4 51 51 H 1.09006 * 110.72533 * 204.22792 * 27 26 25 52 52 H 1.08995 * 110.72093 * 80.94911 * 27 26 25 53 53 H 1.09003 * 110.30899 * 263.03990 * 28 27 26 54 54 H 1.09003 * 110.39526 * 140.91798 * 28 27 26 55 55 H 1.08998 * 109.91398 * 333.50518 * 29 25 4 56 56 H 1.09005 * 109.91508 * 94.60351 * 29 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 3.1298 -0.7083 1.2569 6 6 1.5206 -0.0228 2.4796 7 8 0.6137 -0.5135 3.1182 8 7 2.0642 1.1469 2.8705 9 6 1.4985 1.8728 4.0104 10 6 2.2945 3.1588 4.2419 11 1 2.2274 3.7940 3.3587 12 6 1.7265 3.9031 5.4543 13 6 2.6104 5.1132 5.7651 14 6 4.0246 4.6394 6.1083 15 6 4.6186 3.9033 4.9033 16 7 3.7016 2.8267 4.5039 17 6 4.1487 1.5380 4.3819 18 1 3.4792 0.7135 4.5775 19 6 5.4623 1.2918 4.0069 20 7 6.2087 2.2713 3.5424 21 14 6.1707 -0.4297 4.1614 22 1 5.9321 -1.1782 2.9012 23 1 7.6309 -0.3432 4.4168 24 1 5.5120 -1.1367 5.2891 25 7 1.5669 -2.1119 1.2392 26 6 2.0121 -2.8167 0.0100 27 6 1.9045 -4.3123 0.4002 28 6 2.3559 -4.3172 1.8787 29 6 2.1382 -2.8743 2.3706 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.7828 1.9189 0.9461 35 1 3.1228 1.4451 -0.1255 36 1 1.5779 1.9913 -0.8205 37 1 2.8273 1.5101 2.3946 38 1 0.4581 2.1224 3.8022 39 1 1.5508 1.2474 4.9015 40 1 0.7137 4.2397 5.2328 41 1 1.7077 3.2350 6.3153 42 1 2.6482 5.7684 4.8948 43 1 2.1947 5.6585 6.6124 44 1 4.6474 5.5000 6.3522 45 1 3.9847 3.9644 6.9633 46 1 4.7434 4.6003 4.0745 47 1 5.5862 3.4806 5.1738 48 1 7.1268 2.0992 3.2807 49 1 1.3504 -2.5885 -0.8255 50 1 3.0424 -2.5554 -0.2316 51 1 2.5739 -4.9192 -0.2096 52 1 0.8759 -4.6614 0.3098 53 1 3.4096 -4.5868 1.9516 54 1 1.7477 -5.0108 2.4593 55 1 3.0902 -2.4364 2.6703 56 1 1.4447 -2.8662 3.2116 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714117708.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:37 Heat of formation + Delta-G solvation = -29.183282 kcal Electronic energy + Delta-G solvation = -32881.524920 eV Core-core repulsion = 29018.160414 eV Total energy + Delta-G solvation = -3863.364506 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 337.247 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -41.54109 -39.81267 -38.87234 -36.56628 -35.62938 -34.92271 -32.31988 -32.18403 -31.67172 -29.87530 -28.31415 -27.79563 -27.20068 -25.91391 -23.82508 -22.89634 -22.46872 -22.01908 -21.26001 -20.78268 -20.30119 -18.50532 -17.93475 -17.53861 -17.20319 -16.79330 -16.51337 -16.06596 -15.91218 -15.58641 -15.17899 -14.87229 -14.72687 -14.62504 -14.51433 -14.36764 -14.06303 -14.01014 -13.68178 -13.47674 -13.33038 -13.17912 -13.03596 -12.90686 -12.82122 -12.74190 -12.58215 -12.35297 -12.26629 -12.14857 -12.07808 -11.88054 -11.80412 -11.76034 -11.67812 -11.54343 -11.46086 -11.13492 -11.10451 -10.56442 -10.51197 -9.72777 -9.42619 -8.57175 -7.85476 -5.31447 1.31259 1.38223 1.44230 1.78331 2.29069 2.44186 2.97014 3.29087 3.55389 3.61525 3.70984 3.85710 3.90991 3.99238 3.99733 4.08461 4.21352 4.24934 4.26990 4.31610 4.39004 4.42268 4.55128 4.55939 4.64151 4.66063 4.69549 4.75785 4.80135 4.86217 4.86826 4.95221 4.97826 4.99301 5.01211 5.07382 5.12041 5.13901 5.16411 5.21060 5.27246 5.27667 5.37783 5.39997 5.45865 5.48619 5.63560 5.66741 5.73777 5.82938 5.85485 5.94816 6.42307 6.78277 7.17747 7.43396 7.87082 8.39418 9.18502 Molecular weight = 337.25amu Principal moments of inertia in cm(-1) A = 0.012050 B = 0.004622 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2323.111624 B = 6056.189932 C = 7218.843419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.074 4.074 3 C -0.164 4.164 4 C 0.065 3.935 5 H 0.045 0.955 6 C 0.517 3.483 7 O -0.573 6.573 8 N -0.696 5.696 9 C 0.140 3.860 10 C 0.161 3.839 11 H 0.034 0.966 12 C -0.122 4.122 13 C -0.102 4.102 14 C -0.136 4.136 15 C 0.177 3.823 16 N -0.600 5.600 17 C -0.230 4.230 18 H 0.058 0.942 19 C -0.032 4.032 20 N -0.922 5.922 21 Si 0.930 3.070 22 H -0.286 1.286 23 H -0.292 1.292 24 H -0.287 1.287 25 N -0.496 5.496 26 C 0.028 3.972 27 C -0.112 4.112 28 C -0.127 4.127 29 C 0.034 3.966 30 H 0.029 0.971 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.098 0.902 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.082 0.918 37 H 0.411 0.589 38 H 0.071 0.929 39 H 0.039 0.961 40 H 0.082 0.918 41 H 0.051 0.949 42 H 0.058 0.942 43 H 0.074 0.926 44 H 0.064 0.936 45 H 0.043 0.957 46 H 0.002 0.998 47 H 0.053 0.947 48 H 0.248 0.752 49 H 0.102 0.898 50 H 0.043 0.957 51 H 0.093 0.907 52 H 0.082 0.918 53 H 0.068 0.932 54 H 0.081 0.919 55 H 0.012 0.988 56 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.676 -3.408 -7.682 12.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.093 4.093 3 C -0.222 4.222 4 C -0.048 4.048 5 H 0.063 0.937 6 C 0.303 3.697 7 O -0.453 6.453 8 N -0.349 5.349 9 C 0.016 3.984 10 C 0.055 3.945 11 H 0.052 0.948 12 C -0.162 4.162 13 C -0.140 4.140 14 C -0.175 4.175 15 C 0.052 3.948 16 N -0.325 5.325 17 C -0.361 4.361 18 H 0.075 0.925 19 C -0.229 4.229 20 N -0.569 5.569 21 Si 0.761 3.239 22 H -0.213 1.213 23 H -0.218 1.218 24 H -0.213 1.213 25 N -0.220 5.220 26 C -0.099 4.099 27 C -0.149 4.149 28 C -0.165 4.165 29 C -0.094 4.094 30 H 0.048 0.952 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.116 0.884 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.101 0.899 37 H 0.249 0.751 38 H 0.089 0.911 39 H 0.057 0.943 40 H 0.100 0.900 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.092 0.908 44 H 0.083 0.917 45 H 0.062 0.938 46 H 0.020 0.980 47 H 0.071 0.929 48 H 0.058 0.942 49 H 0.120 0.880 50 H 0.061 0.939 51 H 0.111 0.889 52 H 0.101 0.899 53 H 0.087 0.913 54 H 0.100 0.900 55 H 0.031 0.969 56 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.719 -3.715 -7.238 12.675 hybrid contribution 2.379 -0.638 0.411 2.497 sum -7.340 -4.353 -6.827 10.928 Atomic orbital electron populations 1.21649 0.93577 1.02360 1.00971 1.21080 0.97400 0.95892 0.94885 1.22139 1.01183 0.95580 1.03272 1.21897 0.97022 0.90972 0.94881 0.93732 1.20542 0.82385 0.80961 0.85768 1.90597 1.31781 1.66013 1.56860 1.46320 1.33970 1.22283 1.32307 1.21211 0.96122 0.92619 0.88463 1.20875 0.84556 0.93052 0.96019 0.94813 1.21895 0.99160 0.97323 0.97783 1.21342 0.94578 0.96771 1.01259 1.22060 0.97432 0.99269 0.98745 1.20613 0.93500 0.88361 0.92355 1.44247 1.04526 1.04743 1.78985 1.19173 0.95087 0.84393 1.37417 0.92454 1.25421 0.98955 0.98449 1.00051 1.70083 1.08203 1.31408 1.47164 0.85845 0.77656 0.82787 0.77641 1.21269 1.21823 1.21261 1.64597 1.55084 0.99315 1.03018 1.23443 0.99220 0.94202 0.92997 1.22461 1.02899 0.95013 0.94563 1.22399 1.01818 0.94438 0.97860 1.22828 0.96403 0.94995 0.95186 0.95156 0.90914 0.91882 0.88359 0.92726 0.92894 0.89937 0.75058 0.91103 0.94262 0.89967 0.93064 0.92284 0.90780 0.91697 0.93818 0.98029 0.92875 0.94245 0.87961 0.93899 0.88856 0.89888 0.91275 0.89998 0.96919 0.91920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.28 8.78 71.98 0.63 -2.65 16 2 C -0.07 -1.93 2.42 -10.79 -0.03 -1.95 16 3 C -0.16 -4.33 8.50 71.98 0.61 -3.72 16 4 C 0.06 2.14 1.43 44.17 0.06 2.21 16 5 H 0.04 1.64 7.96 -2.39 -0.02 1.62 16 6 C 0.52 20.21 4.97 87.66 0.44 20.65 16 7 O -0.57 -25.45 15.41 -3.05 -0.05 -25.50 16 8 N -0.70 -27.27 2.28 -463.05 -1.06 -28.33 16 9 C 0.14 5.35 4.44 86.38 0.38 5.73 16 10 C 0.16 6.08 3.02 44.98 0.14 6.21 16 11 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 12 C -0.12 -3.84 5.37 30.67 0.16 -3.68 16 13 C -0.10 -3.05 5.88 30.62 0.18 -2.87 16 14 C -0.14 -4.87 6.08 30.67 0.19 -4.68 16 15 C 0.18 8.02 5.26 86.36 0.45 8.47 16 16 N -0.60 -27.49 2.98 -675.14 -2.01 -29.51 16 17 C -0.23 -11.68 6.95 84.03 0.58 -11.10 16 18 H 0.06 3.06 5.80 -2.91 -0.02 3.04 16 19 C -0.03 -1.72 5.03 84.86 0.43 -1.29 16 20 N -0.92 -50.83 11.06 21.65 0.24 -50.59 16 21 Si 0.93 44.41 29.57 68.60 2.03 46.44 16 22 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 23 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 24 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 25 N -0.50 -15.30 4.05 -862.25 -3.49 -18.79 16 26 C 0.03 0.65 5.31 86.65 0.46 1.11 16 27 C -0.11 -2.16 7.06 31.80 0.22 -1.94 16 28 C -0.13 -3.06 6.93 31.47 0.22 -2.85 16 29 C 0.03 1.13 5.72 86.45 0.49 1.63 16 30 H 0.03 0.92 7.13 -2.38 -0.02 0.90 16 31 H 0.07 1.47 8.14 -2.39 -0.02 1.46 16 32 H 0.06 1.66 7.63 -2.39 -0.02 1.64 16 33 H 0.10 2.15 6.84 -2.39 -0.02 2.13 16 34 H 0.05 1.65 5.12 -2.39 -0.01 1.64 16 35 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.41 16.95 5.82 -92.71 -0.54 16.41 16 38 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 39 H 0.04 1.69 7.49 -2.39 -0.02 1.67 16 40 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 46 H 0.00 0.08 8.14 -2.38 -0.02 0.06 16 47 H 0.05 2.78 6.08 -2.39 -0.01 2.76 16 48 H 0.25 13.50 8.31 -92.70 -0.77 12.73 16 49 H 0.10 1.95 7.63 -2.39 -0.02 1.94 16 50 H 0.04 1.00 8.02 -2.39 -0.02 0.98 16 51 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 52 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 53 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 54 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 55 H 0.01 0.47 7.65 -2.39 -0.02 0.46 16 56 H 0.06 2.35 7.56 -2.38 -0.02 2.34 16 Total: -1.00 -61.85 409.14 1.58 -60.27 By element: Atomic # 1 Polarization: 36.42 SS G_CDS: 0.29 Total: 36.71 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: 5.63 Total: 9.29 kcal Atomic # 7 Polarization: -120.89 SS G_CDS: -6.32 Total: -127.21 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: -0.05 Total: -25.50 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -61.85 1.58 -60.27 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714117708.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.084 kcal (2) G-P(sol) polarization free energy of solvation -61.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds