Wall clock time and date at job start Tue Mar 31 2020 20:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46851 * 111.00020 * 2 1 4 4 C 1.53029 * 109.52354 * 185.83953 * 3 2 1 5 5 C 1.53115 * 109.28154 * 300.82554 * 4 3 2 6 6 C 1.53116 * 109.16115 * 57.65459 * 5 4 3 7 7 H 1.09002 * 109.50387 * 62.28972 * 6 5 4 8 8 C 1.52998 * 109.53637 * 182.38595 * 6 5 4 9 9 C 1.53005 * 109.47319 * 184.82319 * 8 6 5 10 10 N 1.46490 * 109.47327 * 179.97438 * 9 8 6 11 11 C 1.34779 * 120.00434 * 179.97438 * 10 9 8 12 12 O 1.21593 * 119.99375 * 355.01860 * 11 10 9 13 13 N 1.34768 * 120.00407 * 175.02008 * 11 10 9 14 14 C 1.46931 * 120.63112 * 184.94571 * 13 11 10 15 15 C 1.52752 * 109.01019 * 233.58624 * 14 13 11 16 16 C 1.53046 * 109.38404 * 305.58697 * 15 14 13 17 17 C 1.53001 * 109.45929 * 181.26313 * 16 15 14 18 18 C 1.50694 * 109.47286 * 64.93512 * 17 16 15 19 19 H 1.08001 * 120.00379 * 359.97438 * 18 17 16 20 20 C 1.37873 * 120.00118 * 180.02562 * 18 17 16 21 21 N 1.31519 * 120.00111 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 120.00363 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46826 * 59.99711 * 22 20 18 24 24 H 1.48497 * 109.47155 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47055 * 300.00024 * 22 20 18 26 26 C 1.53035 * 109.53594 * 61.23988 * 16 15 14 27 27 C 1.46927 * 120.63133 * 5.22717 * 13 11 10 28 28 C 1.46842 * 111.00364 * 124.21479 * 2 1 3 29 29 H 1.09004 * 109.47157 * 295.78440 * 1 2 3 30 30 H 1.09000 * 109.47290 * 55.78793 * 1 2 3 31 31 H 1.09002 * 109.47157 * 175.78275 * 1 2 3 32 32 H 1.08995 * 109.46270 * 305.86263 * 3 2 1 33 33 H 1.09004 * 109.45743 * 65.82489 * 3 2 1 34 34 H 1.09001 * 109.50091 * 180.88630 * 4 3 2 35 35 H 1.08997 * 109.53439 * 60.79047 * 4 3 2 36 36 H 1.09005 * 109.52696 * 297.74789 * 5 4 3 37 37 H 1.09005 * 109.57802 * 177.59203 * 5 4 3 38 38 H 1.09006 * 109.47140 * 304.82413 * 8 6 5 39 39 H 1.09000 * 109.47354 * 64.82195 * 8 6 5 40 40 H 1.08996 * 109.47097 * 300.00111 * 9 8 6 41 41 H 1.09003 * 109.46769 * 60.00128 * 9 8 6 42 42 H 0.97006 * 120.00437 * 0.02562 * 10 9 8 43 43 H 1.09000 * 109.58402 * 353.42299 * 14 13 11 44 44 H 1.09001 * 109.58539 * 113.84505 * 14 13 11 45 45 H 1.08998 * 109.56501 * 185.55756 * 15 14 13 46 46 H 1.08997 * 109.36441 * 65.50067 * 15 14 13 47 47 H 1.09000 * 109.46042 * 301.22368 * 16 15 14 48 48 H 1.09000 * 109.46683 * 184.93670 * 17 16 15 49 49 H 1.09000 * 109.47054 * 304.92839 * 17 16 15 50 50 H 0.96996 * 120.00459 * 180.02562 * 21 20 18 51 51 H 1.09001 * 109.50087 * 178.67898 * 26 16 15 52 52 H 1.09001 * 109.49762 * 58.58794 * 26 16 15 53 53 H 1.08996 * 109.58859 * 246.15360 * 27 13 11 54 54 H 1.09000 * 109.58786 * 6.58420 * 27 13 11 55 55 H 1.08997 * 109.46308 * 294.17893 * 28 2 1 56 56 H 1.09008 * 109.45860 * 54.14557 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5181 1.3342 -0.1467 5 6 4.1188 0.5369 1.0142 6 6 3.5182 -0.8715 1.0206 7 1 3.7814 -1.3836 0.0951 8 6 4.0680 -1.6568 2.2130 9 6 3.5617 -3.0993 2.1509 10 7 4.0887 -3.8514 3.2923 11 6 3.7726 -5.1525 3.4459 12 8 2.9789 -5.6786 2.6897 13 7 4.3361 -5.8704 4.4375 14 6 4.0857 -7.3137 4.5524 15 6 3.5840 -7.6209 5.9621 16 6 4.5798 -7.0720 6.9865 17 6 4.0949 -7.4064 8.3986 18 6 4.1045 -8.9008 8.5923 19 1 4.4240 -9.5475 7.7885 20 6 3.7043 -9.4426 9.7953 21 7 3.3146 -8.6551 10.7740 22 14 3.7155 -11.2951 10.0353 23 1 5.0963 -11.8096 9.8517 24 1 3.2449 -11.6196 11.4058 25 1 2.8147 -11.9287 9.0391 26 6 4.6890 -5.5534 6.8311 27 6 5.2077 -5.2237 5.4279 28 6 1.9953 -0.7708 1.1336 29 1 -0.3634 0.4470 0.9254 30 1 -0.3634 0.5778 -0.8498 31 1 -0.3633 -1.0249 -0.0756 32 1 1.5633 1.9258 -0.8328 33 1 1.7324 1.8608 0.9376 34 1 3.9098 2.3513 -0.1309 35 1 3.7818 0.8573 -1.0907 36 1 3.8888 1.0353 1.9560 37 1 5.1999 0.4713 0.8915 38 1 5.1576 -1.6524 2.1797 39 1 3.7310 -1.1931 3.1401 40 1 2.4723 -3.1037 2.1842 41 1 3.8988 -3.5630 1.2238 42 1 4.6646 -3.4128 3.9380 43 1 3.3316 -7.6127 3.8244 44 1 5.0105 -7.8607 4.3693 45 1 3.4893 -8.6994 6.0888 46 1 2.6124 -7.1499 6.1106 47 1 5.5574 -7.5250 6.8216 48 1 4.7561 -6.9409 9.1295 49 1 3.0813 -7.0289 8.5336 50 1 3.0334 -9.0362 11.6205 51 1 5.3805 -5.1602 7.5763 52 1 3.7069 -5.1018 6.9714 53 1 6.2258 -5.5968 5.3177 54 1 5.1936 -4.1442 5.2774 55 1 1.7325 -0.2710 2.0659 56 1 1.5634 -1.7717 1.1240 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575042645.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:32 Heat of formation + Delta-G solvation = -72.988087 kcal Electronic energy + Delta-G solvation = -29613.496471 eV Core-core repulsion = 25748.232446 eV Total energy + Delta-G solvation = -3865.264024 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 337.247 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.46045 -40.18881 -38.89075 -36.73200 -35.71480 -34.83121 -33.94080 -32.98448 -31.90921 -30.04337 -28.84805 -27.70208 -26.34343 -25.00978 -24.02213 -23.70774 -23.26491 -22.09654 -21.44875 -20.68260 -20.31260 -19.03501 -18.37543 -17.41395 -16.92968 -16.67035 -16.54208 -16.28802 -15.70542 -15.55421 -15.41463 -15.24804 -15.09203 -14.95480 -14.73639 -14.46056 -14.36880 -14.15132 -13.83545 -13.79746 -13.41275 -13.20625 -13.12391 -13.01155 -12.94786 -12.73259 -12.60954 -12.47151 -12.33848 -12.15495 -12.09275 -11.86562 -11.79823 -11.54232 -11.40290 -11.30488 -11.18545 -11.11433 -11.01918 -10.79654 -10.50680 -10.19097 -9.42207 -9.30046 -8.16165 -6.25083 1.41023 1.43212 1.50585 1.67602 2.13119 2.42828 2.91482 3.00248 3.17350 3.68138 3.86594 3.89653 3.95396 4.00995 4.08928 4.15020 4.21046 4.24604 4.33299 4.36304 4.44429 4.48431 4.52142 4.55003 4.57471 4.62176 4.68668 4.70748 4.82107 4.85664 4.90708 4.93141 4.95776 4.97696 4.99402 5.01423 5.09025 5.12250 5.16411 5.26110 5.31615 5.34478 5.35831 5.39706 5.52723 5.53917 5.56124 5.62493 5.82352 5.90977 6.01252 6.10717 6.15553 6.30851 6.91368 6.98276 7.43280 7.55843 8.95277 Molecular weight = 337.25amu Principal moments of inertia in cm(-1) A = 0.025012 B = 0.001728 C = 0.001718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.187311 B =16199.693969 C =16297.768796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.557 5.557 3 C 0.051 3.949 4 C -0.115 4.115 5 C -0.113 4.113 6 C -0.075 4.075 7 H 0.075 0.925 8 C -0.112 4.112 9 C 0.138 3.862 10 N -0.735 5.735 11 C 0.700 3.300 12 O -0.639 6.639 13 N -0.625 5.625 14 C 0.136 3.864 15 C -0.111 4.111 16 C -0.073 4.073 17 C 0.033 3.967 18 C -0.529 4.529 19 H 0.063 0.937 20 C -0.003 4.003 21 N -0.935 5.935 22 Si 0.958 3.042 23 H -0.265 1.265 24 H -0.287 1.287 25 H -0.270 1.270 26 C -0.125 4.125 27 C 0.119 3.881 28 C 0.056 3.944 29 H 0.024 0.976 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.030 0.970 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.077 0.923 40 H 0.049 0.951 41 H 0.055 0.945 42 H 0.409 0.591 43 H 0.074 0.926 44 H 0.080 0.920 45 H 0.068 0.932 46 H 0.035 0.965 47 H 0.065 0.935 48 H -0.007 1.007 49 H -0.018 1.018 50 H 0.261 0.739 51 H 0.083 0.917 52 H 0.047 0.953 53 H 0.089 0.911 54 H 0.102 0.898 55 H 0.031 0.969 56 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.956 22.774 -21.659 31.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.281 5.281 3 C -0.076 4.076 4 C -0.153 4.153 5 C -0.150 4.150 6 C -0.094 4.094 7 H 0.094 0.906 8 C -0.151 4.151 9 C 0.014 3.986 10 N -0.393 5.393 11 C 0.401 3.599 12 O -0.522 6.522 13 N -0.362 5.362 14 C 0.013 3.987 15 C -0.149 4.149 16 C -0.091 4.091 17 C -0.004 4.004 18 C -0.567 4.567 19 H 0.081 0.919 20 C -0.200 4.200 21 N -0.576 5.576 22 Si 0.783 3.217 23 H -0.190 1.190 24 H -0.213 1.213 25 H -0.195 1.195 26 C -0.163 4.163 27 C -0.003 4.003 28 C -0.072 4.072 29 H 0.043 0.957 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.048 0.952 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.097 0.903 38 H 0.109 0.891 39 H 0.095 0.905 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.248 0.752 43 H 0.092 0.908 44 H 0.098 0.902 45 H 0.086 0.914 46 H 0.054 0.946 47 H 0.084 0.916 48 H 0.011 0.989 49 H 0.000 1.000 50 H 0.069 0.931 51 H 0.101 0.899 52 H 0.066 0.934 53 H 0.107 0.893 54 H 0.120 0.880 55 H 0.049 0.951 56 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.496 22.190 -22.483 31.782 hybrid contribution -0.747 -0.649 1.836 2.086 sum 2.749 21.541 -20.647 29.964 Atomic orbital electron populations 1.22379 0.86868 1.02411 1.00799 1.61931 1.08123 1.14487 1.43602 1.22179 0.96436 0.88504 1.00501 1.21579 0.93686 1.00936 0.99120 1.21615 1.00649 0.94071 0.98703 1.21051 0.93414 0.96597 0.98380 0.90613 1.21744 1.02225 0.91820 0.99264 1.21283 0.98089 0.91669 0.87539 1.45192 1.55221 1.08506 1.30413 1.16062 0.80435 0.82168 0.81195 1.90861 1.39928 1.71939 1.49425 1.47383 1.50938 1.09082 1.28772 1.21355 1.01367 0.79300 0.96693 1.21690 0.98055 1.01288 0.93880 1.21033 0.98315 0.94890 0.94904 1.19020 0.94061 0.95071 0.92290 1.21657 1.42941 0.93618 0.98497 0.91873 1.25935 0.95232 1.02746 0.96066 1.70091 1.46034 1.36850 1.04631 0.85604 0.78938 0.80106 0.77028 1.19024 1.21276 1.19535 1.21944 1.01295 0.95991 0.97082 1.21810 0.93938 0.98180 0.86388 1.22224 0.95905 0.97833 0.91189 0.95744 0.90398 0.91659 0.90289 0.95183 0.90055 0.91564 0.91886 0.90342 0.89067 0.90477 0.93265 0.92641 0.75193 0.90776 0.90186 0.91379 0.94575 0.91615 0.98855 0.99975 0.93056 0.89887 0.93439 0.89325 0.87985 0.95102 0.91623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.59 127.69 1.22 1.54 16 2 N -0.56 -8.42 4.91 -922.60 -4.53 -12.95 16 3 C 0.05 0.61 5.46 86.32 0.47 1.08 16 4 C -0.12 -1.11 6.09 30.64 0.19 -0.92 16 5 C -0.11 -1.04 5.29 30.67 0.16 -0.88 16 6 C -0.07 -0.90 2.35 -10.74 -0.03 -0.92 16 7 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 8 C -0.11 -1.24 4.80 30.60 0.15 -1.09 16 9 C 0.14 2.55 5.43 86.38 0.47 3.02 16 10 N -0.73 -15.29 5.46 -478.54 -2.62 -17.91 16 11 C 0.70 21.12 8.30 179.06 1.49 22.60 16 12 O -0.64 -24.90 15.77 -4.01 -0.06 -24.97 16 13 N -0.63 -17.73 2.98 -837.75 -2.50 -20.22 16 14 C 0.14 4.30 6.41 86.21 0.55 4.85 16 15 C -0.11 -4.15 5.17 30.53 0.16 -3.99 16 16 C -0.07 -2.79 2.10 -10.77 -0.02 -2.81 16 17 C 0.03 1.67 4.45 29.85 0.13 1.80 16 18 C -0.53 -29.30 8.39 25.60 0.21 -29.09 16 19 H 0.06 3.33 7.06 -2.91 -0.02 3.31 16 20 C 0.00 -0.15 5.46 84.65 0.46 0.32 16 21 N -0.94 -56.92 13.29 21.45 0.28 -56.63 16 22 Si 0.96 44.28 29.54 68.60 2.03 46.31 16 23 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 24 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 25 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 26 C -0.12 -3.71 5.36 30.67 0.16 -3.55 16 27 C 0.12 2.62 6.39 86.36 0.55 3.17 16 28 C 0.06 0.85 4.48 86.33 0.39 1.24 16 29 H 0.02 0.32 8.14 -2.38 -0.02 0.30 16 30 H 0.08 0.87 8.09 -2.39 -0.02 0.85 16 31 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.08 0.82 8.08 -2.39 -0.02 0.80 16 33 H 0.03 0.36 8.14 -2.39 -0.02 0.34 16 34 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.07 0.72 8.14 -2.39 -0.02 0.71 16 36 H 0.06 0.57 8.14 -2.38 -0.02 0.56 16 37 H 0.08 0.57 8.14 -2.38 -0.02 0.55 16 38 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 39 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.05 1.09 6.59 -2.39 -0.02 1.08 16 41 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.41 5.97 5.96 -92.70 -0.55 5.42 16 43 H 0.07 2.55 6.99 -2.39 -0.02 2.53 16 44 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 45 H 0.07 2.74 6.91 -2.39 -0.02 2.72 16 46 H 0.04 1.47 8.14 -2.39 -0.02 1.46 16 47 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 48 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 49 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 50 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 51 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 52 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 53 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 54 H 0.10 1.54 5.65 -2.39 -0.01 1.52 16 55 H 0.03 0.48 8.14 -2.39 -0.02 0.46 16 56 H 0.07 1.16 6.59 -2.38 -0.02 1.15 16 Total: -1.00 -72.66 421.87 -0.40 -73.06 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 0.27 Total: 16.94 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: 6.72 Total: -3.62 kcal Atomic # 7 Polarization: -98.36 SS G_CDS: -9.36 Total: -107.71 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -0.06 Total: -24.97 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -72.66 -0.40 -73.06 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575042645.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.070 kcal (2) G-P(sol) polarization free energy of solvation -72.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds