Wall clock time and date at job start Tue Mar 31 2020 20:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46846 * 110.99384 * 2 1 4 4 C 1.53040 * 109.52043 * 174.16110 * 3 2 1 5 5 C 1.53119 * 109.28190 * 59.17624 * 4 3 2 6 6 C 1.53118 * 109.16139 * 302.34970 * 5 4 3 7 7 H 1.08998 * 109.50219 * 297.71383 * 6 5 4 8 8 C 1.52994 * 109.53687 * 177.61038 * 6 5 4 9 9 C 1.53003 * 109.46928 * 175.09333 * 8 6 5 10 10 N 1.46501 * 109.46696 * 180.02562 * 9 8 6 11 11 C 1.34780 * 119.99864 * 180.02562 * 10 9 8 12 12 O 1.21583 * 120.00067 * 355.02228 * 11 10 9 13 13 N 1.34776 * 120.00234 * 175.01666 * 11 10 9 14 14 C 1.46923 * 120.63364 * 184.94803 * 13 11 10 15 15 C 1.52756 * 109.01235 * 233.58529 * 14 13 11 16 16 C 1.53040 * 109.38036 * 305.58957 * 15 14 13 17 17 C 1.53007 * 109.45977 * 181.25807 * 16 15 14 18 18 C 1.50702 * 109.46765 * 64.92906 * 17 16 15 19 19 H 1.07995 * 120.00468 * 0.02562 * 18 17 16 20 20 C 1.37882 * 119.99796 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99774 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00083 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.47045 * 59.99748 * 22 20 18 24 24 H 1.48499 * 109.47120 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.46800 * 300.00016 * 22 20 18 26 26 C 1.53041 * 109.54070 * 61.23934 * 16 15 14 27 27 C 1.46925 * 120.62701 * 5.23094 * 13 11 10 28 28 C 1.46842 * 111.00002 * 235.78897 * 2 1 3 29 29 H 1.09004 * 109.46681 * 184.21090 * 1 2 3 30 30 H 1.08997 * 109.46968 * 304.20819 * 1 2 3 31 31 H 1.08999 * 109.46908 * 64.21685 * 1 2 3 32 32 H 1.08996 * 109.46277 * 294.17263 * 3 2 1 33 33 H 1.08999 * 109.46682 * 54.14448 * 3 2 1 34 34 H 1.09002 * 109.50342 * 179.12247 * 4 3 2 35 35 H 1.08997 * 109.50426 * 299.23302 * 4 3 2 36 36 H 1.08995 * 109.52422 * 182.43955 * 5 4 3 37 37 H 1.09007 * 109.51708 * 62.24904 * 5 4 3 38 38 H 1.08990 * 109.47227 * 295.09899 * 8 6 5 39 39 H 1.09005 * 109.47040 * 55.10065 * 8 6 5 40 40 H 1.09001 * 109.47414 * 299.99849 * 9 8 6 41 41 H 1.08995 * 109.47045 * 60.00937 * 9 8 6 42 42 H 0.97001 * 120.00474 * 0.02562 * 10 9 8 43 43 H 1.09000 * 109.58601 * 353.42123 * 14 13 11 44 44 H 1.09004 * 109.58569 * 113.84373 * 14 13 11 45 45 H 1.08996 * 109.56643 * 185.55132 * 15 14 13 46 46 H 1.09006 * 109.38282 * 65.51497 * 15 14 13 47 47 H 1.08996 * 109.44792 * 301.21971 * 16 15 14 48 48 H 1.08990 * 109.47283 * 184.93118 * 17 16 15 49 49 H 1.09001 * 109.46735 * 304.93434 * 17 16 15 50 50 H 0.97007 * 120.00004 * 180.02562 * 21 20 18 51 51 H 1.09003 * 109.49635 * 178.68051 * 26 16 15 52 52 H 1.09000 * 109.52546 * 58.60329 * 26 16 15 53 53 H 1.09008 * 109.58720 * 246.15583 * 27 13 11 54 54 H 1.09000 * 109.59308 * 6.57919 * 27 13 11 55 55 H 1.08998 * 109.46242 * 65.82525 * 28 2 1 56 56 H 1.08996 * 109.45710 * 305.84310 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3343 0.1467 5 6 4.1189 0.5371 -1.0143 6 6 3.5183 -0.8714 -1.0208 7 1 3.7814 -1.3834 -0.0953 8 6 4.0681 -1.6565 -2.2133 9 6 3.5634 -3.0996 -2.1501 10 7 4.0904 -3.8515 -3.2916 11 6 3.7757 -5.1531 -3.4443 12 8 3.1298 -5.7268 -2.5888 13 7 4.1767 -5.8187 -4.5455 14 6 3.7512 -7.2055 -4.7785 15 6 4.9865 -8.0715 -5.0184 16 6 5.8163 -7.4690 -6.1543 17 6 7.0378 -8.3522 -6.4172 18 6 6.5852 -9.6980 -6.9222 19 1 5.5319 -9.9028 -7.0440 20 6 7.5161 -10.6679 -7.2288 21 7 8.7988 -10.4186 -7.0801 22 14 6.9552 -12.3358 -7.8555 23 1 6.1919 -12.1595 -9.1170 24 1 8.1407 -13.1930 -8.1105 25 1 6.0871 -12.9806 -6.8377 26 6 6.2782 -6.0639 -5.7613 27 6 5.0529 -5.1733 -5.5326 28 6 1.9953 -0.7708 -1.1337 29 1 -0.3633 -1.0250 0.0755 30 1 -0.3633 0.5777 0.8499 31 1 -0.3633 0.4470 -0.9254 32 1 1.7324 1.8608 -0.9376 33 1 1.5633 1.9258 0.8329 34 1 3.9098 2.3514 0.1311 35 1 3.7813 0.8570 1.0906 36 1 5.1998 0.4716 -0.8904 37 1 3.8887 1.0356 -1.9560 38 1 3.7299 -1.1935 -3.1402 39 1 5.1576 -1.6510 -2.1807 40 1 3.9017 -3.5626 -1.2231 41 1 2.4740 -3.1052 -2.1827 42 1 4.6659 -3.4127 -3.9375 43 1 3.2122 -7.5739 -3.9056 44 1 3.1037 -7.2468 -5.6545 45 1 4.6775 -9.0811 -5.2893 46 1 5.5860 -8.1064 -4.1087 47 1 5.2083 -7.4122 -7.0572 48 1 7.6743 -7.8788 -7.1647 49 1 7.5986 -8.4813 -5.4915 50 1 9.4537 -11.1008 -7.2961 51 1 6.8886 -5.6446 -6.5611 52 1 6.8658 -6.1166 -4.8447 53 1 4.5138 -5.0454 -6.4714 54 1 5.3727 -4.2012 -5.1573 55 1 1.7325 -0.2709 -2.0659 56 1 1.5636 -1.7715 -1.1239 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575042646.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:37 Heat of formation + Delta-G solvation = -72.886972 kcal Electronic energy + Delta-G solvation = -29571.528235 eV Core-core repulsion = 25706.268595 eV Total energy + Delta-G solvation = -3865.259640 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 337.247 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.46099 -40.18513 -38.88956 -36.73163 -35.71276 -34.82900 -33.93840 -32.98398 -31.90765 -30.04074 -28.84419 -27.69018 -26.34026 -25.00839 -24.01991 -23.70383 -23.26273 -22.09680 -21.44820 -20.67469 -20.31873 -19.03179 -18.37251 -17.41294 -16.93624 -16.65259 -16.54171 -16.29468 -15.69032 -15.56349 -15.40251 -15.23484 -15.10056 -14.96787 -14.72681 -14.44293 -14.36636 -14.16215 -13.83973 -13.79151 -13.41627 -13.17669 -13.11531 -13.02417 -12.93024 -12.74565 -12.60670 -12.46808 -12.32966 -12.15475 -12.08992 -11.86682 -11.79587 -11.54662 -11.39964 -11.30242 -11.18867 -11.10878 -11.01751 -10.79383 -10.50381 -10.19297 -9.42204 -9.28049 -8.15869 -6.24747 1.41238 1.43418 1.50806 1.67528 2.13102 2.43114 2.91676 3.01167 3.17678 3.68127 3.86760 3.89892 3.95617 4.01164 4.09191 4.14961 4.21461 4.24792 4.33373 4.36402 4.44458 4.48896 4.53230 4.55402 4.58162 4.62244 4.68502 4.71248 4.82094 4.85721 4.90340 4.94147 4.96125 4.97614 5.00307 5.01653 5.09047 5.12355 5.16281 5.26174 5.31911 5.34853 5.36097 5.39982 5.52404 5.54037 5.56341 5.62622 5.82678 5.91281 6.01262 6.12701 6.16660 6.31141 6.91642 6.98260 7.43562 7.55816 8.95533 Molecular weight = 337.25amu Principal moments of inertia in cm(-1) A = 0.031609 B = 0.001699 C = 0.001644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.611765 B =16480.729705 C =17030.454085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.560 5.560 3 C 0.053 3.947 4 C -0.116 4.116 5 C -0.113 4.113 6 C -0.076 4.076 7 H 0.071 0.929 8 C -0.112 4.112 9 C 0.138 3.862 10 N -0.735 5.735 11 C 0.700 3.300 12 O -0.639 6.639 13 N -0.625 5.625 14 C 0.136 3.864 15 C -0.111 4.111 16 C -0.073 4.073 17 C 0.033 3.967 18 C -0.530 4.530 19 H 0.063 0.937 20 C -0.002 4.002 21 N -0.935 5.935 22 Si 0.958 3.042 23 H -0.266 1.266 24 H -0.287 1.287 25 H -0.270 1.270 26 C -0.125 4.125 27 C 0.119 3.881 28 C 0.058 3.942 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.026 0.974 32 H 0.033 0.967 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.048 0.952 41 H 0.056 0.944 42 H 0.409 0.591 43 H 0.074 0.926 44 H 0.080 0.920 45 H 0.068 0.932 46 H 0.036 0.964 47 H 0.065 0.935 48 H -0.007 1.007 49 H -0.018 1.018 50 H 0.261 0.739 51 H 0.083 0.917 52 H 0.047 0.953 53 H 0.088 0.912 54 H 0.102 0.898 55 H 0.035 0.965 56 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.089 28.238 10.152 32.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.284 5.284 3 C -0.075 4.075 4 C -0.154 4.154 5 C -0.150 4.150 6 C -0.096 4.096 7 H 0.089 0.911 8 C -0.150 4.150 9 C 0.014 3.986 10 N -0.393 5.393 11 C 0.401 3.599 12 O -0.521 6.521 13 N -0.362 5.362 14 C 0.013 3.987 15 C -0.149 4.149 16 C -0.091 4.091 17 C -0.005 4.005 18 C -0.568 4.568 19 H 0.081 0.919 20 C -0.199 4.199 21 N -0.576 5.576 22 Si 0.783 3.217 23 H -0.190 1.190 24 H -0.213 1.213 25 H -0.195 1.195 26 C -0.163 4.163 27 C -0.003 4.003 28 C -0.070 4.070 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.045 0.955 32 H 0.051 0.949 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.248 0.752 43 H 0.092 0.908 44 H 0.098 0.902 45 H 0.086 0.914 46 H 0.054 0.946 47 H 0.084 0.916 48 H 0.012 0.988 49 H 0.001 0.999 50 H 0.069 0.931 51 H 0.101 0.899 52 H 0.066 0.934 53 H 0.106 0.894 54 H 0.120 0.880 55 H 0.053 0.947 56 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.261 27.561 11.170 32.561 hybrid contribution 0.198 -0.944 -1.190 1.532 sum -13.063 26.617 9.980 31.285 Atomic orbital electron populations 1.22374 0.86727 1.02431 1.00846 1.61916 1.08242 1.14485 1.43766 1.22164 0.96215 0.88542 1.00585 1.21587 0.93917 1.00885 0.99030 1.21613 1.00479 0.94128 0.98820 1.21056 0.93765 0.96517 0.98251 0.91062 1.21736 1.01985 0.91847 0.99464 1.21282 0.98202 0.91538 0.87536 1.45194 1.55074 1.08521 1.30546 1.16061 0.79823 0.82304 0.81669 1.90859 1.48203 1.68982 1.44094 1.47383 1.52163 1.14434 1.22197 1.21353 0.96027 0.79669 1.01662 1.21689 0.96149 0.99204 0.97868 1.21032 0.96742 0.94186 0.97172 1.19022 0.93280 0.93927 0.94221 1.21661 0.93185 0.99121 1.42798 0.91889 1.25932 0.95009 1.02785 0.96221 1.70094 1.01518 1.35613 1.50337 0.85603 0.77618 0.79268 0.79185 1.19049 1.21263 1.19542 1.21944 0.97537 0.95349 1.01482 1.21809 0.90194 0.95711 0.92607 1.22205 0.95538 0.97911 0.91297 0.91604 0.90555 0.95510 0.94921 0.90361 0.90075 0.91838 0.90725 0.91561 0.89883 0.89661 0.93350 0.92584 0.75189 0.90775 0.90216 0.91391 0.94552 0.91649 0.98848 0.99943 0.93063 0.89889 0.93385 0.89374 0.87972 0.94669 0.91482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.59 127.69 1.22 1.52 16 2 N -0.56 -8.04 4.91 -922.58 -4.53 -12.57 16 3 C 0.05 0.59 5.46 86.33 0.47 1.06 16 4 C -0.12 -1.14 6.09 30.65 0.19 -0.95 16 5 C -0.11 -1.06 5.29 30.67 0.16 -0.90 16 6 C -0.08 -0.92 2.35 -10.74 -0.03 -0.95 16 7 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 8 C -0.11 -1.24 4.80 30.59 0.15 -1.09 16 9 C 0.14 2.56 5.44 86.38 0.47 3.03 16 10 N -0.73 -15.30 5.47 -478.53 -2.62 -17.91 16 11 C 0.70 21.12 8.30 179.05 1.49 22.60 16 12 O -0.64 -24.90 15.77 -3.98 -0.06 -24.97 16 13 N -0.63 -17.73 2.98 -837.75 -2.50 -20.22 16 14 C 0.14 4.30 6.41 86.22 0.55 4.85 16 15 C -0.11 -4.15 5.17 30.53 0.16 -3.99 16 16 C -0.07 -2.78 2.10 -10.76 -0.02 -2.81 16 17 C 0.03 1.66 4.45 29.85 0.13 1.80 16 18 C -0.53 -29.34 8.39 25.60 0.21 -29.13 16 19 H 0.06 3.32 7.06 -2.91 -0.02 3.30 16 20 C 0.00 -0.13 5.46 84.66 0.46 0.34 16 21 N -0.93 -56.87 13.29 21.45 0.28 -56.59 16 22 Si 0.96 44.28 29.54 68.60 2.03 46.31 16 23 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 24 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 25 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 26 C -0.12 -3.71 5.36 30.67 0.16 -3.55 16 27 C 0.12 2.62 6.39 86.36 0.55 3.17 16 28 C 0.06 0.81 4.48 86.33 0.39 1.20 16 29 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.08 0.78 8.09 -2.39 -0.02 0.76 16 31 H 0.03 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.03 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.08 0.78 8.09 -2.39 -0.02 0.76 16 34 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 38 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 40 H 0.05 1.08 8.14 -2.39 -0.02 1.07 16 41 H 0.06 1.15 6.59 -2.39 -0.02 1.13 16 42 H 0.41 5.97 5.96 -92.71 -0.55 5.42 16 43 H 0.07 2.55 6.99 -2.39 -0.02 2.53 16 44 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 45 H 0.07 2.73 6.91 -2.39 -0.02 2.72 16 46 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 47 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 48 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 49 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 50 H 0.26 15.04 8.31 -92.70 -0.77 14.27 16 51 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 52 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 53 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 54 H 0.10 1.54 5.65 -2.39 -0.01 1.52 16 55 H 0.04 0.47 8.14 -2.39 -0.02 0.45 16 56 H 0.07 1.09 6.59 -2.39 -0.02 1.07 16 Total: -1.00 -72.62 421.88 -0.40 -73.02 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 0.27 Total: 16.72 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: 6.72 Total: -3.78 kcal Atomic # 7 Polarization: -97.94 SS G_CDS: -9.36 Total: -107.29 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -0.06 Total: -24.97 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -72.62 -0.40 -73.02 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575042646.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.130 kcal (2) G-P(sol) polarization free energy of solvation -72.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds