Wall clock time and date at job start Tue Mar 31 2020 20:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50710 * 110.53345 * 2 1 4 4 C 1.38242 * 119.99830 * 238.27489 * 3 2 1 5 5 C 1.38220 * 120.00420 * 179.97438 * 4 3 2 6 6 C 1.38264 * 120.02097 * 359.97438 * 5 4 3 7 7 C 1.38197 * 120.01117 * 359.97438 * 6 5 4 8 8 C 1.38296 * 120.00586 * 58.52080 * 3 2 1 9 9 Br 1.89099 * 120.01306 * 0.02562 * 8 3 2 10 10 N 1.47305 * 110.60130 * 237.16770 * 2 1 3 11 11 C 1.34527 * 106.62102 * 241.31773 * 10 2 1 12 12 O 1.21522 * 123.77602 * 179.97438 * 11 10 2 13 13 N 1.33797 * 112.45825 * 359.97438 * 11 10 2 14 14 C 1.37508 * 124.18203 * 179.97438 * 13 11 10 15 15 H 1.07999 * 119.99871 * 319.50159 * 14 13 11 16 16 C 1.38897 * 119.99843 * 139.49278 * 14 13 11 17 17 N 1.31386 * 119.99623 * 170.32600 * 16 14 13 18 18 Si 1.86796 * 120.00277 * 350.32513 * 16 14 13 19 19 H 1.48497 * 109.46938 * 95.83674 * 18 16 14 20 20 H 1.48499 * 109.47048 * 215.83954 * 18 16 14 21 21 H 1.48500 * 109.47136 * 335.83271 * 18 16 14 22 22 C 1.34769 * 111.64036 * 359.97438 * 13 11 10 23 23 O 1.21233 * 127.15510 * 180.02562 * 22 13 11 24 24 H 1.09002 * 109.47444 * 64.63243 * 1 2 3 25 25 H 1.09005 * 109.47189 * 184.63621 * 1 2 3 26 26 H 1.09004 * 109.47284 * 304.63144 * 1 2 3 27 27 H 1.07998 * 119.99792 * 359.97438 * 4 3 2 28 28 H 1.07998 * 119.98495 * 180.02562 * 5 4 3 29 29 H 1.08002 * 119.99300 * 180.02562 * 6 5 4 30 30 H 1.07994 * 120.00022 * 179.97438 * 7 6 5 31 31 H 0.96997 * 126.69224 * 61.35415 * 10 2 1 32 32 H 0.96999 * 119.99740 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0586 1.4114 0.0000 4 6 2.8906 1.8378 -1.0183 5 6 3.3750 3.1323 -1.0187 6 6 3.0274 4.0014 -0.0011 7 6 2.1949 3.5762 1.0167 8 6 1.7155 2.2784 1.0214 9 35 0.5837 1.6932 2.4186 10 7 2.0483 -0.7476 -1.1586 11 6 2.7628 -1.7751 -0.6652 12 8 3.3320 -2.5961 -1.3571 13 7 2.7767 -1.7922 0.6726 14 6 3.4332 -2.7365 1.4264 15 1 3.4137 -3.7743 1.1283 16 6 4.1216 -2.3555 2.5710 17 7 4.5865 -3.2693 3.3927 18 14 4.3866 -0.5440 2.9421 19 1 3.3290 -0.0690 3.8700 20 1 5.7183 -0.3575 3.5722 21 1 4.3233 0.2344 1.6791 22 6 2.0678 -0.7695 1.1901 23 8 1.8954 -0.5178 2.3635 24 1 -0.3634 0.4403 -0.9286 25 1 -0.3634 -1.0243 0.0831 26 1 -0.3634 0.5840 0.8456 27 1 3.1620 1.1594 -1.8136 28 1 4.0247 3.4653 -1.8147 29 1 3.4058 5.0129 -0.0021 30 1 1.9238 4.2550 1.8117 31 1 1.9032 -0.5393 -2.0948 32 1 5.0669 -3.0032 4.1922 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003572827.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:39 Heat of formation + Delta-G solvation = 26.047625 kcal Electronic energy + Delta-G solvation = -22309.240286 eV Core-core repulsion = 18897.668116 eV Total energy + Delta-G solvation = -3411.572170 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.94581 -39.22630 -37.64512 -35.71370 -34.58464 -32.65569 -32.11041 -31.00516 -29.55912 -29.00785 -26.04311 -24.24926 -22.73339 -22.36483 -20.80671 -20.14865 -18.05868 -17.47409 -16.40478 -16.00882 -15.59653 -15.58764 -15.02124 -14.56518 -14.44072 -14.06940 -13.68709 -13.51598 -13.25548 -13.00208 -12.76054 -12.46572 -12.38502 -12.22993 -11.57861 -11.28885 -11.15219 -10.65764 -10.38210 -10.16881 -9.89453 -9.63814 -9.18742 -9.13102 -8.98222 -8.75610 -8.47593 -8.06406 -6.43399 -4.34725 0.99889 1.15839 1.76182 2.39096 3.21427 3.29182 3.35672 3.49073 3.52562 3.99962 4.09881 4.29280 4.43544 4.65654 4.79969 4.89865 5.03671 5.13456 5.17274 5.34936 5.49910 5.70532 5.72771 5.83445 6.09531 6.14072 6.19014 6.27022 6.38534 6.69178 7.26089 7.35563 7.73886 8.19143 8.42740 8.62771 9.06277 9.40897 10.61350 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.013672 B = 0.008181 C = 0.007025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.541127 B = 3421.536145 C = 3985.030746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.158 3.842 3 C -0.057 4.057 4 C -0.099 4.099 5 C -0.106 4.106 6 C -0.115 4.115 7 C -0.093 4.093 8 C -0.078 4.078 9 Br -0.010 7.010 10 N -0.735 5.735 11 C 0.684 3.316 12 O -0.549 6.549 13 N -0.419 5.419 14 C -0.343 4.343 15 H 0.117 0.883 16 C 0.083 3.917 17 N -0.854 5.854 18 Si 0.909 3.091 19 H -0.241 1.241 20 H -0.304 1.304 21 H -0.286 1.286 22 C 0.478 3.522 23 O -0.454 6.454 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.097 0.903 27 H 0.134 0.866 28 H 0.130 0.870 29 H 0.131 0.869 30 H 0.135 0.865 31 H 0.426 0.574 32 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.473 16.918 -6.072 19.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.065 3.935 3 C -0.060 4.060 4 C -0.118 4.118 5 C -0.125 4.125 6 C -0.134 4.134 7 C -0.113 4.113 8 C -0.158 4.158 9 Br 0.078 6.922 10 N -0.401 5.401 11 C 0.387 3.613 12 O -0.424 6.424 13 N -0.152 5.152 14 C -0.468 4.468 15 H 0.134 0.866 16 C -0.127 4.127 17 N -0.488 5.488 18 Si 0.740 3.260 19 H -0.167 1.167 20 H -0.233 1.233 21 H -0.212 1.212 22 C 0.266 3.734 23 O -0.329 6.329 24 H 0.088 0.912 25 H 0.092 0.908 26 H 0.115 0.885 27 H 0.152 0.848 28 H 0.148 0.852 29 H 0.149 0.851 30 H 0.152 0.848 31 H 0.270 0.730 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.532 16.185 -5.001 18.967 hybrid contribution 0.570 1.034 -0.627 1.337 sum -7.963 17.219 -5.628 19.788 Atomic orbital electron populations 1.22395 0.90105 1.04666 1.04700 1.20186 0.96770 0.89110 0.87395 1.19559 0.97993 0.93632 0.94815 1.21051 0.96176 0.96266 0.98284 1.21246 0.99130 0.93391 0.98721 1.21180 0.97850 1.00110 0.94252 1.21094 0.97289 0.93825 0.99123 1.21753 1.02275 0.96106 0.95673 1.96695 1.61544 1.89728 1.44252 1.45627 1.56910 1.29730 1.07790 1.16377 0.79588 0.81903 0.83461 1.90865 1.48564 1.41547 1.61458 1.42118 1.42081 1.25691 1.05273 1.19018 1.32123 0.89332 1.06300 0.86566 1.25269 0.93064 0.99657 0.94735 1.69623 1.33644 1.34228 1.11297 0.86218 0.76450 0.83264 0.80051 1.16667 1.23319 1.21192 1.20451 0.79827 0.83657 0.89439 1.90727 1.56908 1.69518 1.15744 0.91233 0.90790 0.88471 0.84783 0.85182 0.85092 0.84757 0.73046 0.91035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 8.70 37.16 0.32 -1.99 16 2 C 0.16 2.79 1.00 -133.24 -0.13 2.65 16 3 C -0.06 -0.92 4.82 -104.59 -0.50 -1.43 16 4 C -0.10 -1.39 9.38 -39.59 -0.37 -1.76 16 5 C -0.11 -1.23 10.05 -39.58 -0.40 -1.63 16 6 C -0.12 -1.27 10.05 -39.59 -0.40 -1.67 16 7 C -0.09 -1.20 9.79 -39.56 -0.39 -1.58 16 8 C -0.08 -1.22 5.98 -39.52 -0.24 -1.46 16 9 Br -0.01 -0.16 25.86 -68.01 -1.76 -1.91 16 10 N -0.74 -12.68 4.59 -54.02 -0.25 -12.93 16 11 C 0.68 15.81 8.57 -88.01 -0.75 15.06 16 12 O -0.55 -14.22 17.62 5.35 0.09 -14.12 16 13 N -0.42 -10.71 2.37 -65.57 -0.16 -10.86 16 14 C -0.34 -10.02 9.93 -14.76 -0.15 -10.17 16 15 H 0.12 3.63 8.06 -52.49 -0.42 3.21 16 16 C 0.08 2.43 5.37 -17.50 -0.09 2.33 16 17 N -0.85 -25.55 13.95 55.49 0.77 -24.78 16 18 Si 0.91 23.90 24.19 -169.99 -4.11 19.79 16 19 H -0.24 -6.32 6.35 56.52 0.36 -5.96 16 20 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 21 H -0.29 -7.47 6.63 56.52 0.37 -7.10 16 22 C 0.48 10.98 4.57 -10.55 -0.05 10.93 16 23 O -0.45 -11.05 9.13 5.60 0.05 -11.00 16 24 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 26 H 0.10 1.40 4.34 -51.93 -0.23 1.18 16 27 H 0.13 1.73 6.69 -52.49 -0.35 1.38 16 28 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 29 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 30 H 0.13 1.42 8.06 -52.49 -0.42 0.99 16 31 H 0.43 5.62 8.53 -40.82 -0.35 5.27 16 32 H 0.28 7.76 8.31 -40.82 -0.34 7.42 16 LS Contribution 282.42 15.07 4.26 4.26 Total: -1.00 -34.08 282.42 -6.91 -41.00 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -2.67 Total: 1.26 kcal Atomic # 6 Polarization: 12.45 SS G_CDS: -3.15 Total: 9.30 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: 0.37 Total: -48.57 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: 0.15 Total: -25.12 kcal Atomic # 14 Polarization: 23.90 SS G_CDS: -4.11 Total: 19.79 kcal Atomic # 35 Polarization: -0.16 SS G_CDS: -1.76 Total: -1.91 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -34.08 -6.91 -41.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003572827.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.045 kcal (2) G-P(sol) polarization free energy of solvation -34.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds