Wall clock time and date at job start Tue Mar 31 2020 20:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50710 * 110.53345 * 2 1 4 4 C 1.38242 * 119.99830 * 238.27489 * 3 2 1 5 5 C 1.38220 * 120.00420 * 179.97438 * 4 3 2 6 6 C 1.38264 * 120.02097 * 359.97438 * 5 4 3 7 7 C 1.38197 * 120.01117 * 359.97438 * 6 5 4 8 8 C 1.38296 * 120.00586 * 58.52080 * 3 2 1 9 9 Br 1.89099 * 120.01306 * 0.02562 * 8 3 2 10 10 N 1.47305 * 110.60130 * 237.16770 * 2 1 3 11 11 C 1.34527 * 106.62102 * 241.31773 * 10 2 1 12 12 O 1.21522 * 123.77602 * 179.97438 * 11 10 2 13 13 N 1.33797 * 112.45825 * 359.97438 * 11 10 2 14 14 C 1.37508 * 124.18203 * 179.97438 * 13 11 10 15 15 H 1.07999 * 119.99871 * 319.50159 * 14 13 11 16 16 C 1.38897 * 119.99843 * 139.49278 * 14 13 11 17 17 N 1.31386 * 119.99623 * 170.32600 * 16 14 13 18 18 Si 1.86796 * 120.00277 * 350.32513 * 16 14 13 19 19 H 1.48497 * 109.46938 * 95.83674 * 18 16 14 20 20 H 1.48499 * 109.47048 * 215.83954 * 18 16 14 21 21 H 1.48500 * 109.47136 * 335.83271 * 18 16 14 22 22 C 1.34769 * 111.64036 * 359.97438 * 13 11 10 23 23 O 1.21233 * 127.15510 * 180.02562 * 22 13 11 24 24 H 1.09002 * 109.47444 * 64.63243 * 1 2 3 25 25 H 1.09005 * 109.47189 * 184.63621 * 1 2 3 26 26 H 1.09004 * 109.47284 * 304.63144 * 1 2 3 27 27 H 1.07998 * 119.99792 * 359.97438 * 4 3 2 28 28 H 1.07998 * 119.98495 * 180.02562 * 5 4 3 29 29 H 1.08002 * 119.99300 * 180.02562 * 6 5 4 30 30 H 1.07994 * 120.00022 * 179.97438 * 7 6 5 31 31 H 0.96997 * 126.69224 * 61.35415 * 10 2 1 32 32 H 0.96999 * 119.99740 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0586 1.4114 0.0000 4 6 2.8906 1.8378 -1.0183 5 6 3.3750 3.1323 -1.0187 6 6 3.0274 4.0014 -0.0011 7 6 2.1949 3.5762 1.0167 8 6 1.7155 2.2784 1.0214 9 35 0.5837 1.6932 2.4186 10 7 2.0483 -0.7476 -1.1586 11 6 2.7628 -1.7751 -0.6652 12 8 3.3320 -2.5961 -1.3571 13 7 2.7767 -1.7922 0.6726 14 6 3.4332 -2.7365 1.4264 15 1 3.4137 -3.7743 1.1283 16 6 4.1216 -2.3555 2.5710 17 7 4.5865 -3.2693 3.3927 18 14 4.3866 -0.5440 2.9421 19 1 3.3290 -0.0690 3.8700 20 1 5.7183 -0.3575 3.5722 21 1 4.3233 0.2344 1.6791 22 6 2.0678 -0.7695 1.1901 23 8 1.8954 -0.5178 2.3635 24 1 -0.3634 0.4403 -0.9286 25 1 -0.3634 -1.0243 0.0831 26 1 -0.3634 0.5840 0.8456 27 1 3.1620 1.1594 -1.8136 28 1 4.0247 3.4653 -1.8147 29 1 3.4058 5.0129 -0.0021 30 1 1.9238 4.2550 1.8117 31 1 1.9032 -0.5393 -2.0948 32 1 5.0669 -3.0032 4.1922 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003572827.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:38 Heat of formation + Delta-G solvation = 1.980662 kcal Electronic energy + Delta-G solvation = -22310.283908 eV Core-core repulsion = 18897.668116 eV Total energy + Delta-G solvation = -3412.615791 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.64508 -40.37645 -39.47604 -37.32395 -36.49114 -34.35341 -33.63966 -32.28498 -30.72685 -30.07300 -28.05197 -25.75058 -24.07876 -23.53521 -22.49275 -21.66421 -19.96841 -18.90335 -18.16983 -17.49362 -17.29767 -16.96048 -16.58691 -16.14474 -15.82475 -15.70385 -15.11499 -14.97461 -14.71185 -14.51118 -14.35608 -14.15281 -13.68733 -13.43813 -13.21932 -12.70152 -12.48667 -12.25030 -12.16480 -11.87156 -11.69364 -11.29525 -10.84408 -10.73881 -10.54733 -10.18635 -9.94276 -9.45863 -8.66386 -6.61524 -0.03458 0.17035 0.60790 0.66748 1.17001 1.29517 1.39342 1.62087 2.04278 2.24671 2.31419 2.60390 2.83716 3.10099 3.26154 3.73598 3.82131 4.08890 4.30941 4.37059 4.41299 4.54825 4.63706 4.70908 4.84740 5.05617 5.14445 5.18914 5.27589 5.37442 5.62362 5.78533 5.87432 6.20567 6.35182 6.78345 6.87466 7.47884 8.42605 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.013672 B = 0.008181 C = 0.007025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.541127 B = 3421.536145 C = 3985.030746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.170 3.830 3 C -0.086 4.086 4 C -0.110 4.110 5 C -0.100 4.100 6 C -0.102 4.102 7 C -0.097 4.097 8 C -0.097 4.097 9 Br -0.030 7.030 10 N -0.701 5.701 11 C 0.682 3.318 12 O -0.587 6.587 13 N -0.444 5.444 14 C -0.355 4.355 15 H 0.078 0.922 16 C 0.043 3.957 17 N -0.892 5.892 18 Si 0.965 3.035 19 H -0.243 1.243 20 H -0.298 1.298 21 H -0.282 1.282 22 C 0.473 3.527 23 O -0.469 6.469 24 H 0.107 0.893 25 H 0.066 0.934 26 H 0.099 0.901 27 H 0.141 0.859 28 H 0.165 0.835 29 H 0.171 0.829 30 H 0.154 0.846 31 H 0.449 0.551 32 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.757 20.896 -7.597 23.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.079 3.921 3 C -0.089 4.089 4 C -0.129 4.129 5 C -0.118 4.118 6 C -0.120 4.120 7 C -0.117 4.117 8 C -0.177 4.177 9 Br 0.058 6.942 10 N -0.368 5.368 11 C 0.385 3.615 12 O -0.465 6.465 13 N -0.178 5.178 14 C -0.481 4.481 15 H 0.095 0.905 16 C -0.164 4.164 17 N -0.527 5.527 18 Si 0.795 3.205 19 H -0.169 1.169 20 H -0.228 1.228 21 H -0.208 1.208 22 C 0.263 3.737 23 O -0.344 6.344 24 H 0.126 0.874 25 H 0.085 0.915 26 H 0.117 0.883 27 H 0.158 0.842 28 H 0.183 0.817 29 H 0.189 0.811 30 H 0.172 0.828 31 H 0.297 0.703 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.854 20.203 -6.558 23.012 hybrid contribution 0.605 -0.128 -0.222 0.657 sum -8.249 20.075 -6.780 22.738 Atomic orbital electron populations 1.22462 0.87516 1.04728 1.06921 1.20154 0.98430 0.89436 0.84093 1.19467 1.00292 0.92401 0.96729 1.21276 0.95826 0.97798 0.97966 1.21694 0.98413 0.92182 0.99533 1.21690 0.95904 1.01728 0.92675 1.21455 0.97050 0.92913 1.00260 1.21912 1.03161 0.97383 0.95273 1.96676 1.62219 1.90071 1.45282 1.45343 1.54887 1.27567 1.09026 1.16386 0.79929 0.82608 0.82619 1.90833 1.50408 1.43260 1.61954 1.42249 1.43184 1.26130 1.06234 1.18728 1.33195 0.88965 1.07192 0.90454 1.25904 0.92872 1.03021 0.94553 1.69687 1.35061 1.35836 1.12160 0.85348 0.76312 0.79121 0.79757 1.16852 1.22768 1.20838 1.21336 0.78660 0.82831 0.90860 1.90702 1.56972 1.69694 1.17073 0.87394 0.91459 0.88271 0.84163 0.81713 0.81109 0.82791 0.70314 0.90445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.21 8.70 71.98 0.63 -3.58 16 2 C 0.17 5.70 1.00 2.24 0.00 5.70 16 3 C -0.09 -2.54 4.82 -19.85 -0.10 -2.63 16 4 C -0.11 -2.65 9.38 22.27 0.21 -2.44 16 5 C -0.10 -1.78 10.05 22.27 0.22 -1.56 16 6 C -0.10 -1.67 10.05 22.27 0.22 -1.45 16 7 C -0.10 -2.08 9.79 22.29 0.22 -1.86 16 8 C -0.10 -2.77 5.98 22.31 0.13 -2.63 16 9 Br -0.03 -0.92 25.86 -20.37 -0.53 -1.45 16 10 N -0.70 -22.96 4.59 -443.26 -2.04 -24.99 16 11 C 0.68 31.64 8.57 179.44 1.54 33.18 16 12 O -0.59 -30.95 17.62 -3.78 -0.07 -31.02 16 13 N -0.44 -23.05 2.37 -598.60 -1.42 -24.47 16 14 C -0.35 -21.62 9.93 83.96 0.83 -20.79 16 15 H 0.08 5.18 8.06 -2.91 -0.02 5.15 16 16 C 0.04 2.58 5.37 84.92 0.46 3.04 16 17 N -0.89 -55.18 13.95 21.65 0.30 -54.87 16 18 Si 0.97 49.99 24.19 68.60 1.66 51.65 16 19 H -0.24 -12.50 6.35 99.48 0.63 -11.87 16 20 H -0.30 -14.93 7.11 99.48 0.71 -14.22 16 21 H -0.28 -14.28 6.63 99.48 0.66 -13.62 16 22 C 0.47 21.55 4.57 87.94 0.40 21.95 16 23 O -0.47 -22.72 9.13 -2.89 -0.03 -22.74 16 24 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 25 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 26 H 0.10 2.68 4.34 -2.38 -0.01 2.67 16 27 H 0.14 3.10 6.69 -2.91 -0.02 3.08 16 28 H 0.17 1.79 8.06 -2.91 -0.02 1.77 16 29 H 0.17 1.48 8.06 -2.91 -0.02 1.45 16 30 H 0.15 2.61 8.06 -2.91 -0.02 2.58 16 31 H 0.45 10.60 8.53 -92.71 -0.79 9.81 16 32 H 0.29 16.28 8.31 -92.71 -0.77 15.51 16 Total: -1.00 -77.69 282.42 2.93 -74.76 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: 0.27 Total: 6.21 kcal Atomic # 6 Polarization: 22.15 SS G_CDS: 4.77 Total: 26.93 kcal Atomic # 7 Polarization: -101.19 SS G_CDS: -3.15 Total: -104.34 kcal Atomic # 8 Polarization: -53.67 SS G_CDS: -0.09 Total: -53.76 kcal Atomic # 14 Polarization: 49.99 SS G_CDS: 1.66 Total: 51.65 kcal Atomic # 35 Polarization: -0.92 SS G_CDS: -0.53 Total: -1.45 kcal Total: -77.69 2.93 -74.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003572827.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.736 kcal (2) G-P(sol) polarization free energy of solvation -77.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds