Wall clock time and date at job start Tue Mar 31 2020 20:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31443 * 1 3 3 Si 1.86797 * 119.99875 * 2 1 4 4 H 1.48497 * 109.47085 * 269.99787 * 3 2 1 5 5 H 1.48501 * 109.47116 * 29.99951 * 3 2 1 6 6 H 1.48501 * 109.46865 * 149.99539 * 3 2 1 7 7 C 1.38747 * 119.99828 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00171 * 180.02562 * 7 2 1 9 9 O 1.34923 * 120.00118 * 359.97438 * 7 2 1 10 10 C 1.34313 * 116.99802 * 180.02562 * 9 7 2 11 11 O 1.21212 * 120.00433 * 0.02562 * 10 9 7 12 12 C 1.50705 * 119.99902 * 180.02562 * 10 9 7 13 13 S 1.81000 * 109.47372 * 179.97438 * 12 10 9 14 14 C 1.76194 * 100.00051 * 180.02562 * 13 12 10 15 15 N 1.31276 * 125.82451 * 359.95873 * 14 13 12 16 16 C 1.34378 * 109.35891 * 180.02562 * 15 14 13 17 17 C 1.34391 * 108.40526 * 359.97438 * 16 15 14 18 18 N 1.36395 * 125.81974 * 180.02562 * 14 13 12 19 19 C 1.40198 * 126.53400 * 359.69997 * 18 14 13 20 20 C 1.38857 * 120.05738 * 309.72389 * 19 18 14 21 21 C 1.38110 * 119.96000 * 179.74872 * 20 19 18 22 22 C 1.38278 * 120.07808 * 0.53061 * 21 20 19 23 23 C 1.38382 * 120.11646 * 359.73964 * 22 21 20 24 24 Cl 1.73597 * 119.97951 * 180.02562 * 23 22 21 25 25 C 1.38261 * 120.03786 * 359.97438 * 23 22 21 26 26 H 0.96997 * 120.00406 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46922 * 60.00347 * 12 10 9 28 28 H 1.08991 * 109.46966 * 300.00293 * 12 10 9 29 29 H 1.07996 * 125.79379 * 179.97438 * 16 15 14 30 30 H 1.08004 * 126.52260 * 180.02562 * 17 16 15 31 31 H 1.08005 * 120.01952 * 0.02562 * 20 19 18 32 32 H 1.07994 * 119.96332 * 180.24754 * 21 20 19 33 33 H 1.07997 * 119.94433 * 179.72573 * 22 21 20 34 34 H 1.07999 * 120.03683 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 2.4959 2.0464 -1.4000 5 1 1.4458 2.6527 0.7000 6 1 3.5459 1.4402 0.7002 7 6 2.0081 -1.2016 -0.0005 8 1 3.0881 -1.2017 -0.0001 9 8 1.3335 -2.3701 -0.0005 10 6 2.0651 -3.4965 -0.0005 11 8 3.2755 -3.4331 -0.0001 12 6 1.3809 -4.8393 -0.0011 13 16 2.6274 -6.1516 -0.0017 14 6 1.5800 -7.5685 -0.0031 15 7 0.2674 -7.5536 -0.0027 16 6 -0.1924 -8.8163 -0.0035 17 6 0.8606 -9.6513 -0.0050 18 7 1.9949 -8.8678 -0.0035 19 6 3.3219 -9.3202 -0.0087 20 6 4.2240 -8.8187 -0.9376 21 6 5.5320 -9.2620 -0.9376 22 6 5.9416 -10.2127 -0.0208 23 6 5.0438 -10.7188 0.9027 24 17 5.5620 -11.9118 2.0524 25 6 3.7347 -10.2741 0.9108 26 1 -0.4850 0.8400 -0.0004 27 1 0.7585 -4.9295 -0.8914 28 1 0.7578 -4.9299 0.8885 29 1 -1.2316 -9.1101 -0.0031 30 1 0.8250 -10.7307 -0.0063 31 1 3.9041 -8.0791 -1.6567 32 1 6.2347 -8.8690 -1.6574 33 1 6.9638 -10.5610 -0.0256 34 1 3.0340 -10.6694 1.6313 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000021478333.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:02 Heat of formation + Delta-G solvation = -4.502459 kcal Electronic energy + Delta-G solvation = -22634.125995 eV Core-core repulsion = 18878.409631 eV Total energy + Delta-G solvation = -3755.716364 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 338.028 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.21458 -41.09967 -40.29829 -37.62768 -37.41700 -35.17132 -34.37177 -32.11068 -31.71673 -30.79138 -30.25027 -27.37026 -24.76539 -24.17774 -22.96296 -22.33548 -21.91895 -20.01993 -19.97051 -18.56809 -17.74037 -17.28886 -17.20131 -17.01750 -16.53086 -16.30820 -16.08868 -15.87993 -15.25763 -15.02081 -14.87292 -14.60957 -14.45284 -14.42285 -14.37603 -13.59961 -13.09549 -13.03063 -12.89116 -12.68817 -12.41899 -12.19810 -12.09449 -12.06289 -11.79578 -11.47974 -11.31564 -11.21194 -10.74311 -10.56055 -10.08155 -9.80136 -8.57946 -8.57802 -6.39043 -0.33225 -0.13390 -0.01800 0.77222 0.85310 0.96268 1.20497 1.35230 1.52629 1.55691 1.68636 1.90552 2.08903 2.35393 2.59755 2.93531 3.60646 3.65828 3.82045 3.90150 3.92479 4.08806 4.18098 4.23975 4.37483 4.46321 4.50921 4.58932 4.77698 4.97733 5.11841 5.12952 5.18679 5.40848 5.58451 5.76206 5.94716 6.48997 6.71058 6.85828 7.62073 8.62530 Molecular weight = 338.03amu Principal moments of inertia in cm(-1) A = 0.018497 B = 0.002458 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.418174 B =11389.974852 C =12419.787181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C -0.003 4.003 3 Si 1.021 2.979 4 H -0.258 1.258 5 H -0.260 1.260 6 H -0.261 1.261 7 C -0.422 4.422 8 H 0.088 0.912 9 O -0.232 6.232 10 C 0.414 3.586 11 O -0.563 6.563 12 C -0.089 4.089 13 S 0.061 5.939 14 C 0.164 3.836 15 N -0.511 5.511 16 C -0.029 4.029 17 C -0.028 4.028 18 N -0.401 5.401 19 C 0.109 3.891 20 C -0.118 4.118 21 C -0.080 4.080 22 C -0.096 4.096 23 C -0.027 4.027 24 Cl -0.053 7.053 25 C -0.105 4.105 26 H 0.281 0.719 27 H 0.131 0.869 28 H 0.128 0.872 29 H 0.203 0.797 30 H 0.219 0.781 31 H 0.133 0.867 32 H 0.172 0.828 33 H 0.168 0.832 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.417 -25.635 -0.555 26.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.204 4.204 3 Si 0.840 3.160 4 H -0.183 1.183 5 H -0.184 1.184 6 H -0.185 1.185 7 C -0.498 4.498 8 H 0.106 0.894 9 O -0.140 6.140 10 C 0.260 3.740 11 O -0.461 6.461 12 C -0.238 4.238 13 S 0.290 5.710 14 C -0.204 4.204 15 N -0.234 5.234 16 C -0.177 4.177 17 C -0.160 4.160 18 N -0.084 5.084 19 C 0.018 3.982 20 C -0.138 4.138 21 C -0.098 4.098 22 C -0.115 4.115 23 C -0.055 4.055 24 Cl -0.024 7.024 25 C -0.126 4.126 26 H 0.090 0.910 27 H 0.149 0.851 28 H 0.146 0.854 29 H 0.220 0.780 30 H 0.236 0.764 31 H 0.151 0.849 32 H 0.189 0.811 33 H 0.185 0.815 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 9.327 -24.792 -0.437 26.492 hybrid contribution -1.080 -0.124 0.176 1.102 sum 8.247 -24.916 -0.261 26.247 Atomic orbital electron populations 1.70086 1.07776 1.29655 1.46186 1.26629 0.96917 1.02462 0.94382 0.84575 0.77693 0.74134 0.79642 1.18287 1.18439 1.18531 1.21533 0.92430 0.80572 1.55253 0.89387 1.83884 1.40025 1.13953 1.76163 1.22927 0.86278 0.87152 0.77642 1.90559 1.16075 1.88020 1.51485 1.22891 1.01060 0.89757 1.10098 1.85911 1.03011 0.88686 1.93361 1.25560 0.94492 0.89612 1.10776 1.70834 1.05696 1.25629 1.21202 1.22919 1.01041 0.87180 1.06565 1.23562 0.83385 0.99568 1.09513 1.43050 1.05430 1.04800 1.55122 1.17708 0.82516 0.99556 0.98450 1.21462 0.94477 1.00347 0.97520 1.21377 0.94568 0.95204 0.98690 1.21570 1.00918 0.95878 0.93099 1.20775 0.93810 0.95744 0.95136 1.98399 1.90471 1.54965 1.58599 1.20922 0.95866 0.97631 0.98142 0.90986 0.85099 0.85355 0.78016 0.76415 0.84876 0.81058 0.81484 0.83466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.37 13.67 21.62 0.30 -53.08 16 2 C 0.00 -0.17 5.49 84.87 0.47 0.29 16 3 Si 1.02 43.11 29.55 68.60 2.03 45.14 16 4 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 5 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 6 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 7 C -0.42 -25.60 9.64 67.94 0.66 -24.94 16 8 H 0.09 5.35 6.86 -2.91 -0.02 5.33 16 9 O -0.23 -13.85 9.75 14.82 0.14 -13.71 16 10 C 0.41 21.18 7.92 71.24 0.56 21.74 16 11 O -0.56 -30.63 15.10 20.77 0.31 -30.32 16 12 C -0.09 -3.55 5.79 71.24 0.41 -3.13 16 13 S 0.06 2.10 19.80 -56.49 -1.12 0.98 16 14 C 0.16 5.08 7.81 179.60 1.40 6.48 16 15 N -0.51 -16.25 10.60 -196.24 -2.08 -18.33 16 16 C -0.03 -0.68 11.84 83.42 0.99 0.30 16 17 C -0.03 -0.55 11.32 82.87 0.94 0.39 16 18 N -0.40 -9.85 2.91 -346.09 -1.01 -10.86 16 19 C 0.11 2.29 5.85 38.08 0.22 2.51 16 20 C -0.12 -2.30 8.87 22.39 0.20 -2.10 16 21 C -0.08 -1.08 10.04 22.25 0.22 -0.86 16 22 C -0.10 -1.18 9.83 22.31 0.22 -0.96 16 23 C -0.03 -0.41 6.32 22.31 0.14 -0.27 16 24 Cl -0.05 -0.74 28.95 -2.72 -0.08 -0.82 16 25 C -0.11 -1.83 9.49 22.40 0.21 -1.62 16 26 H 0.28 15.03 8.31 -92.71 -0.77 14.26 16 27 H 0.13 4.95 8.14 -2.40 -0.02 4.93 16 28 H 0.13 4.92 8.14 -2.40 -0.02 4.90 16 29 H 0.20 3.37 8.06 -2.91 -0.02 3.35 16 30 H 0.22 2.32 8.06 -2.91 -0.02 2.30 16 31 H 0.13 2.84 7.59 -2.91 -0.02 2.82 16 32 H 0.17 1.39 8.06 -2.91 -0.02 1.36 16 33 H 0.17 1.17 8.06 -2.91 -0.02 1.14 16 34 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -75.89 341.20 6.29 -69.60 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: 1.15 Total: 13.56 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: 6.65 Total: -2.17 kcal Atomic # 7 Polarization: -79.48 SS G_CDS: -2.79 Total: -82.27 kcal Atomic # 8 Polarization: -44.48 SS G_CDS: 0.46 Total: -44.02 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Atomic # 16 Polarization: 2.10 SS G_CDS: -1.12 Total: 0.98 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -0.08 Total: -0.82 kcal Total: -75.89 6.29 -69.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021478333.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.094 kcal (2) G-P(sol) polarization free energy of solvation -75.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds