Wall clock time and date at job start Tue Mar 31 2020 21:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86804 * 119.99609 * 2 1 4 4 H 1.48501 * 109.47412 * 270.00082 * 3 2 1 5 5 H 1.48498 * 109.47010 * 30.00140 * 3 2 1 6 6 H 1.48500 * 109.47145 * 149.99702 * 3 2 1 7 7 C 1.38651 * 120.00761 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00340 * 179.97438 * 7 2 1 9 9 O 1.34835 * 119.99283 * 0.02562 * 7 2 1 10 10 C 1.35747 * 116.99699 * 175.28000 * 9 7 2 11 11 C 1.38951 * 120.03533 * 174.15533 * 10 9 7 12 12 C 1.38126 * 120.08400 * 179.97438 * 11 10 9 13 13 C 1.38194 * 120.14478 * 359.74409 * 12 11 10 14 14 C 1.38968 * 120.05675 * 0.51103 * 13 12 11 15 15 N 1.39670 * 120.03864 * 179.77031 * 14 13 12 16 16 S 1.65606 * 119.99835 * 285.26411 * 15 14 13 17 17 O 1.42096 * 106.40218 * 178.96174 * 16 15 14 18 18 O 1.42104 * 106.40075 * 46.04245 * 16 15 14 19 19 C 1.76197 * 107.21854 * 292.49982 * 16 15 14 20 20 C 1.38244 * 120.40296 * 95.38894 * 19 16 15 21 21 N 1.31850 * 120.81852 * 179.72112 * 20 19 16 22 22 C 1.31865 * 121.74915 * 0.25677 * 21 20 19 23 23 C 1.38426 * 120.73239 * 359.97438 * 22 21 20 24 24 F 1.35094 * 120.44740 * 180.02562 * 23 22 21 25 25 C 1.38594 * 120.40991 * 275.61895 * 19 16 15 26 26 C 1.38724 * 120.03104 * 354.13190 * 10 9 7 27 27 H 0.96990 * 120.00648 * 0.02562 * 1 2 3 28 28 H 1.08002 * 119.95785 * 359.95701 * 11 10 9 29 29 H 1.08007 * 119.93183 * 180.02562 * 12 11 10 30 30 H 1.07998 * 119.97451 * 180.27786 * 13 12 11 31 31 H 0.97001 * 120.00059 * 105.26865 * 15 14 13 32 32 H 1.08002 * 119.58775 * 0.02562 * 20 19 16 33 33 H 1.08004 * 119.63908 * 180.02562 * 22 21 20 34 34 H 1.08001 * 120.79691 * 359.97438 * 25 19 16 35 35 H 1.08004 * 120.07288 * 0.04363 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4969 2.0466 -1.4001 5 1 1.4468 2.6527 0.7001 6 1 3.5470 1.4404 0.7001 7 6 2.0090 -1.2007 0.0005 8 1 3.0889 -1.2006 0.0001 9 8 1.3348 -2.3684 0.0005 10 6 2.0707 -3.5048 -0.0985 11 6 1.4544 -4.7447 0.0174 12 6 2.2021 -5.9017 -0.0837 13 6 3.5643 -5.8305 -0.3056 14 6 4.1876 -4.5935 -0.4171 15 7 5.5651 -4.5219 -0.6365 16 16 6.6184 -4.8427 0.6005 17 8 7.9254 -4.7113 0.0589 18 8 6.1523 -6.0303 1.2266 19 6 6.4390 -3.5518 1.7863 20 6 5.6038 -3.7138 2.8759 21 7 5.4677 -2.7553 3.7710 22 6 6.1120 -1.6098 3.6644 23 6 6.9624 -1.3730 2.5981 24 9 7.6201 -0.1974 2.4949 25 6 7.1299 -2.3599 1.6355 26 6 3.4387 -3.4293 -0.3158 27 1 -0.4850 0.8399 -0.0004 28 1 0.3894 -4.8040 0.1869 29 1 1.7205 -6.8642 0.0063 30 1 4.1455 -6.7369 -0.3886 31 1 5.9048 -4.2843 -1.5134 32 1 5.0598 -4.6387 2.9980 33 1 5.9755 -0.8481 4.4179 34 1 7.7868 -2.2043 0.7924 35 1 3.9201 -2.4667 -0.4059 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044261011.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:58 Heat of formation + Delta-G solvation = -72.118351 kcal Electronic energy + Delta-G solvation = -26875.379317 eV Core-core repulsion = 22688.394533 eV Total energy + Delta-G solvation = -4186.984784 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.057 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.22306 -40.24206 -39.33897 -37.47101 -36.99980 -36.02053 -34.37383 -32.99148 -32.36285 -31.28650 -29.34458 -28.48257 -25.45314 -24.67771 -23.96337 -22.04020 -21.63920 -19.86041 -18.69806 -18.11551 -17.94631 -17.65624 -17.51632 -17.15217 -16.17301 -16.06070 -15.84726 -15.21619 -14.94617 -14.68736 -14.29451 -14.18751 -13.78442 -13.73702 -13.55696 -13.24754 -12.86834 -12.77604 -12.57396 -12.26088 -12.14925 -11.92364 -11.82915 -11.46886 -11.25640 -11.03863 -10.95250 -10.60902 -10.56630 -10.03450 -9.75763 -9.65567 -9.40902 -8.97159 -8.30990 -7.44151 -6.58218 -4.18144 0.02622 0.33297 0.69875 1.82955 2.16638 2.76688 3.02392 3.03524 3.07971 3.15976 3.55755 3.63475 3.84056 4.04609 4.22660 4.30957 4.45570 4.49523 4.66015 4.94829 5.08223 5.13011 5.40166 5.41868 5.48700 5.59253 5.76746 5.94472 6.11428 6.19963 6.40647 6.54701 6.85077 6.97526 7.05233 7.10643 7.24692 7.39900 7.61150 7.84683 8.86836 9.54024 10.59188 Molecular weight = 338.06amu Principal moments of inertia in cm(-1) A = 0.009219 B = 0.005912 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3036.397966 B = 4735.223776 C = 6788.378775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.043 3.957 3 Si 0.936 3.064 4 H -0.272 1.272 5 H -0.275 1.275 6 H -0.268 1.268 7 C -0.394 4.394 8 H 0.089 0.911 9 O -0.171 6.171 10 C 0.156 3.844 11 C -0.177 4.177 12 C -0.070 4.070 13 C -0.190 4.190 14 C 0.152 3.848 15 N -1.053 6.053 16 S 2.700 3.300 17 O -0.956 6.956 18 O -0.937 6.937 19 C -0.708 4.708 20 C 0.201 3.799 21 N -0.463 5.463 22 C 0.134 3.866 23 C 0.027 3.973 24 F -0.124 7.124 25 C -0.006 4.006 26 C -0.228 4.228 27 H 0.272 0.728 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.423 0.577 32 H 0.183 0.817 33 H 0.177 0.823 34 H 0.162 0.838 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.984 -5.451 2.401 13.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.162 4.162 3 Si 0.760 3.240 4 H -0.197 1.197 5 H -0.200 1.200 6 H -0.193 1.193 7 C -0.470 4.470 8 H 0.106 0.894 9 O -0.074 6.074 10 C 0.101 3.899 11 C -0.197 4.197 12 C -0.089 4.089 13 C -0.212 4.212 14 C 0.058 3.942 15 N -0.809 5.809 16 S 2.788 3.212 17 O -0.946 6.946 18 O -0.927 6.927 19 C -0.794 4.794 20 C 0.043 3.957 21 N -0.170 5.170 22 C -0.025 4.025 23 C 0.005 3.995 24 F -0.103 7.103 25 C -0.034 4.034 26 C -0.250 4.250 27 H 0.082 0.918 28 H 0.140 0.860 29 H 0.140 0.860 30 H 0.138 0.862 31 H 0.261 0.739 32 H 0.200 0.800 33 H 0.194 0.806 34 H 0.180 0.820 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 11.562 -6.030 3.389 13.473 hybrid contribution 1.037 2.215 -0.937 2.619 sum 12.599 -3.815 2.452 13.390 Atomic orbital electron populations 1.70014 1.05901 1.27878 1.45290 1.25251 0.95820 0.98753 0.96370 0.85791 0.78993 0.80295 0.78883 1.19706 1.19993 1.19300 1.21225 0.91548 0.80807 1.53380 0.89400 1.84020 1.33840 1.11327 1.78249 1.19195 0.89663 0.88286 0.92746 1.20400 1.00331 0.89959 1.08983 1.20595 0.93067 0.97225 0.98039 1.20893 0.94975 0.95968 1.09328 1.16942 0.80796 0.93234 1.03183 1.52897 1.15279 1.87328 1.25429 1.02075 0.72500 0.73809 0.72836 1.93599 1.36085 1.86895 1.78071 1.93615 1.81171 1.41756 1.76145 1.32031 1.10985 1.17582 1.18809 1.22766 0.89279 0.97471 0.86196 1.67933 1.20501 1.00499 1.28109 1.23357 0.88994 0.95247 0.94907 1.18722 0.98269 0.83742 0.98810 1.91554 1.78838 1.43932 1.95987 1.21300 0.94525 0.90106 0.97451 1.21297 0.94522 0.98079 1.11131 0.91820 0.85970 0.86032 0.86191 0.73886 0.79997 0.80628 0.82015 0.85196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.13 13.67 55.48 0.76 -23.37 16 2 C 0.04 1.14 5.49 -17.52 -0.10 1.05 16 3 Si 0.94 19.83 29.55 -169.99 -5.02 14.81 16 4 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 5 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 6 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 7 C -0.39 -10.40 9.45 30.89 0.29 -10.11 16 8 H 0.09 2.15 5.28 -52.49 -0.28 1.87 16 9 O -0.17 -4.57 9.76 0.04 0.00 -4.57 16 10 C 0.16 3.44 6.64 -39.14 -0.26 3.18 16 11 C -0.18 -3.35 9.99 -39.36 -0.39 -3.74 16 12 C -0.07 -1.12 10.03 -39.64 -0.40 -1.52 16 13 C -0.19 -3.02 9.22 -39.33 -0.36 -3.38 16 14 C 0.15 2.48 5.83 -83.81 -0.49 1.99 16 15 N -1.05 -13.81 5.70 32.40 0.18 -13.63 16 16 S 2.70 35.83 5.73 -107.50 -0.62 35.21 16 17 O -0.96 -13.69 17.51 -57.17 -1.00 -14.69 16 18 O -0.94 -14.13 16.11 -57.17 -0.92 -15.05 16 19 C -0.71 -9.52 5.96 -39.45 -0.24 -9.76 16 20 C 0.20 2.86 10.69 -17.54 -0.19 2.67 16 21 N -0.46 -6.74 10.36 -13.19 -0.14 -6.88 16 22 C 0.13 1.71 11.17 -17.47 -0.20 1.51 16 23 C 0.03 0.35 7.35 -39.28 -0.29 0.06 16 24 F -0.12 -1.57 17.28 2.25 0.04 -1.53 16 25 C -0.01 -0.08 9.64 -39.21 -0.38 -0.46 16 26 C -0.23 -4.43 9.06 -39.20 -0.35 -4.78 16 27 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16 29 H 0.12 1.55 8.06 -52.48 -0.42 1.12 16 30 H 0.12 1.72 7.94 -52.49 -0.42 1.30 16 31 H 0.42 4.44 8.95 -34.48 -0.31 4.13 16 32 H 0.18 2.36 7.52 -52.49 -0.39 1.97 16 33 H 0.18 1.69 8.06 -52.48 -0.42 1.27 16 34 H 0.16 1.67 7.84 -52.49 -0.41 1.25 16 35 H 0.13 2.56 5.70 -52.48 -0.30 2.26 16 LS Contribution 333.23 15.07 5.02 5.02 Total: -1.00 -32.36 333.23 -7.55 -39.91 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -2.51 Total: 8.05 kcal Atomic # 6 Polarization: -19.94 SS G_CDS: -3.35 Total: -23.29 kcal Atomic # 7 Polarization: -44.68 SS G_CDS: 0.81 Total: -43.88 kcal Atomic # 8 Polarization: -32.39 SS G_CDS: -1.92 Total: -34.31 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Atomic # 16 Polarization: 35.83 SS G_CDS: -0.62 Total: 35.21 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.36 -7.55 -39.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044261011.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.205 kcal (2) G-P(sol) polarization free energy of solvation -32.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds