Wall clock time and date at job start Tue Mar 31 2020 21:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86804 * 119.99609 * 2 1 4 4 H 1.48501 * 109.47412 * 270.00082 * 3 2 1 5 5 H 1.48498 * 109.47010 * 30.00140 * 3 2 1 6 6 H 1.48500 * 109.47145 * 149.99702 * 3 2 1 7 7 C 1.38651 * 120.00761 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00340 * 179.97438 * 7 2 1 9 9 O 1.34835 * 119.99283 * 0.02562 * 7 2 1 10 10 C 1.35747 * 116.99699 * 175.28000 * 9 7 2 11 11 C 1.38951 * 120.03533 * 174.15533 * 10 9 7 12 12 C 1.38126 * 120.08400 * 179.97438 * 11 10 9 13 13 C 1.38194 * 120.14478 * 359.74409 * 12 11 10 14 14 C 1.38968 * 120.05675 * 0.51103 * 13 12 11 15 15 N 1.39670 * 120.03864 * 179.77031 * 14 13 12 16 16 S 1.65606 * 119.99835 * 285.26411 * 15 14 13 17 17 O 1.42096 * 106.40218 * 178.96174 * 16 15 14 18 18 O 1.42104 * 106.40075 * 46.04245 * 16 15 14 19 19 C 1.76197 * 107.21854 * 292.49982 * 16 15 14 20 20 C 1.38244 * 120.40296 * 95.38894 * 19 16 15 21 21 N 1.31850 * 120.81852 * 179.72112 * 20 19 16 22 22 C 1.31865 * 121.74915 * 0.25677 * 21 20 19 23 23 C 1.38426 * 120.73239 * 359.97438 * 22 21 20 24 24 F 1.35094 * 120.44740 * 180.02562 * 23 22 21 25 25 C 1.38594 * 120.40991 * 275.61895 * 19 16 15 26 26 C 1.38724 * 120.03104 * 354.13190 * 10 9 7 27 27 H 0.96990 * 120.00648 * 0.02562 * 1 2 3 28 28 H 1.08002 * 119.95785 * 359.95701 * 11 10 9 29 29 H 1.08007 * 119.93183 * 180.02562 * 12 11 10 30 30 H 1.07998 * 119.97451 * 180.27786 * 13 12 11 31 31 H 0.97001 * 120.00059 * 105.26865 * 15 14 13 32 32 H 1.08002 * 119.58775 * 0.02562 * 20 19 16 33 33 H 1.08004 * 119.63908 * 180.02562 * 22 21 20 34 34 H 1.08001 * 120.79691 * 359.97438 * 25 19 16 35 35 H 1.08004 * 120.07288 * 0.04363 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4969 2.0466 -1.4001 5 1 1.4468 2.6527 0.7001 6 1 3.5470 1.4404 0.7001 7 6 2.0090 -1.2007 0.0005 8 1 3.0889 -1.2006 0.0001 9 8 1.3348 -2.3684 0.0005 10 6 2.0707 -3.5048 -0.0985 11 6 1.4544 -4.7447 0.0174 12 6 2.2021 -5.9017 -0.0837 13 6 3.5643 -5.8305 -0.3056 14 6 4.1876 -4.5935 -0.4171 15 7 5.5651 -4.5219 -0.6365 16 16 6.6184 -4.8427 0.6005 17 8 7.9254 -4.7113 0.0589 18 8 6.1523 -6.0303 1.2266 19 6 6.4390 -3.5518 1.7863 20 6 5.6038 -3.7138 2.8759 21 7 5.4677 -2.7553 3.7710 22 6 6.1120 -1.6098 3.6644 23 6 6.9624 -1.3730 2.5981 24 9 7.6201 -0.1974 2.4949 25 6 7.1299 -2.3599 1.6355 26 6 3.4387 -3.4293 -0.3158 27 1 -0.4850 0.8399 -0.0004 28 1 0.3894 -4.8040 0.1869 29 1 1.7205 -6.8642 0.0063 30 1 4.1455 -6.7369 -0.3886 31 1 5.9048 -4.2843 -1.5134 32 1 5.0598 -4.6387 2.9980 33 1 5.9755 -0.8481 4.4179 34 1 7.7868 -2.2043 0.7924 35 1 3.9201 -2.4667 -0.4059 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044261011.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:57 Heat of formation + Delta-G solvation = -95.499037 kcal Electronic energy + Delta-G solvation = -26876.393180 eV Core-core repulsion = 22688.394533 eV Total energy + Delta-G solvation = -4187.998647 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.057 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.21648 -41.27248 -40.89489 -38.82296 -38.37473 -37.16859 -35.71737 -34.22704 -34.02067 -32.30762 -30.84267 -29.93729 -27.31057 -25.69727 -25.00406 -23.49323 -23.13876 -20.98344 -20.06614 -19.51437 -19.34404 -18.79454 -18.69238 -18.16803 -17.40299 -17.14818 -17.04021 -16.77216 -16.25878 -16.19751 -15.84218 -15.49635 -15.18366 -14.83998 -14.64867 -14.56434 -14.43999 -13.90427 -13.79528 -13.64541 -13.41881 -13.30950 -13.01308 -12.96168 -12.70977 -12.55421 -12.44487 -12.18488 -11.66613 -11.42735 -11.21282 -10.88837 -10.79587 -10.43122 -9.71569 -9.05301 -8.49130 -6.16649 -1.05132 -0.72686 -0.32550 0.40941 0.68529 1.31113 1.38878 1.46221 1.65925 2.10640 2.12728 2.48625 2.61491 2.76391 3.04023 3.11272 3.22817 3.46538 3.48617 3.50277 3.66233 4.03364 4.14321 4.20525 4.36352 4.43496 4.47628 4.48497 4.66702 5.04460 5.06692 5.19893 5.20870 5.56220 5.60443 5.65351 5.87486 5.99200 6.20697 6.36855 6.96002 7.75937 8.73539 Molecular weight = 338.06amu Principal moments of inertia in cm(-1) A = 0.009219 B = 0.005912 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3036.397966 B = 4735.223776 C = 6788.378775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.017 4.017 3 Si 1.004 2.996 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.256 1.256 7 C -0.407 4.407 8 H 0.097 0.903 9 O -0.225 6.225 10 C 0.120 3.880 11 C -0.186 4.186 12 C -0.057 4.057 13 C -0.174 4.174 14 C 0.162 3.838 15 N -1.046 6.046 16 S 2.725 3.275 17 O -0.961 6.961 18 O -0.951 6.951 19 C -0.714 4.714 20 C 0.187 3.813 21 N -0.485 5.485 22 C 0.129 3.871 23 C 0.022 3.978 24 F -0.122 7.122 25 C -0.010 4.010 26 C -0.230 4.230 27 H 0.272 0.728 28 H 0.122 0.878 29 H 0.164 0.836 30 H 0.149 0.851 31 H 0.437 0.563 32 H 0.188 0.812 33 H 0.203 0.797 34 H 0.185 0.815 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.267 -6.661 2.127 15.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.215 4.215 3 Si 0.824 3.176 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.180 1.180 7 C -0.483 4.483 8 H 0.115 0.885 9 O -0.132 6.132 10 C 0.069 3.931 11 C -0.206 4.206 12 C -0.075 4.075 13 C -0.196 4.196 14 C 0.068 3.932 15 N -0.804 5.804 16 S 2.812 3.188 17 O -0.951 6.951 18 O -0.941 6.941 19 C -0.801 4.801 20 C 0.029 3.971 21 N -0.193 5.193 22 C -0.029 4.029 23 C 0.000 4.000 24 F -0.101 7.101 25 C -0.037 4.037 26 C -0.253 4.253 27 H 0.082 0.918 28 H 0.140 0.860 29 H 0.182 0.818 30 H 0.167 0.833 31 H 0.278 0.722 32 H 0.205 0.795 33 H 0.220 0.780 34 H 0.202 0.798 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 13.893 -7.293 3.093 15.993 hybrid contribution 0.483 2.268 -0.843 2.468 sum 14.376 -5.025 2.250 15.395 Atomic orbital electron populations 1.70150 1.07785 1.28718 1.48613 1.26392 0.96706 1.02319 0.96079 0.84788 0.77928 0.75522 0.79350 1.18706 1.19582 1.18015 1.21635 0.92116 0.81435 1.53112 0.88527 1.83983 1.35388 1.12388 1.81411 1.19747 0.90926 0.88169 0.94261 1.20674 1.00907 0.90003 1.09014 1.21049 0.93031 0.97784 0.95675 1.21379 0.95229 0.96671 1.06286 1.16886 0.81938 0.92444 1.01937 1.52803 1.13769 1.87285 1.26513 1.01327 0.71960 0.73213 0.72278 1.93594 1.36302 1.86981 1.78244 1.93592 1.81414 1.42737 1.76388 1.32002 1.11384 1.17990 1.18721 1.22965 0.89694 0.97854 0.86602 1.67949 1.21373 1.01250 1.28713 1.23828 0.88299 0.95252 0.95505 1.18788 0.98361 0.83903 0.98961 1.91561 1.78765 1.43772 1.95978 1.21634 0.94370 0.89669 0.98023 1.21303 0.93814 0.98952 1.11186 0.91840 0.85956 0.81832 0.83332 0.72231 0.79494 0.78001 0.79780 0.86052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.09 13.67 21.61 0.30 -53.79 16 2 C -0.02 -0.90 5.49 84.83 0.47 -0.44 16 3 Si 1.00 41.35 29.55 68.60 2.03 43.38 16 4 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 5 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 6 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 7 C -0.41 -22.33 9.45 67.92 0.64 -21.68 16 8 H 0.10 4.86 5.28 -2.91 -0.02 4.85 16 9 O -0.23 -12.63 9.76 -22.76 -0.22 -12.85 16 10 C 0.12 5.40 6.64 22.56 0.15 5.55 16 11 C -0.19 -6.95 9.99 22.41 0.22 -6.73 16 12 C -0.06 -1.63 10.03 22.23 0.22 -1.41 16 13 C -0.17 -4.89 9.22 22.43 0.21 -4.68 16 14 C 0.16 4.91 5.83 38.20 0.22 5.13 16 15 N -1.05 -24.53 5.70 -51.41 -0.29 -24.82 16 16 S 2.72 65.22 5.73 -56.49 -0.32 64.89 16 17 O -0.96 -24.76 17.51 -128.00 -2.24 -27.00 16 18 O -0.95 -25.97 16.11 -128.00 -2.06 -28.04 16 19 C -0.71 -17.98 5.96 22.36 0.13 -17.85 16 20 C 0.19 5.12 10.69 84.69 0.91 6.03 16 21 N -0.48 -13.73 10.36 -195.65 -2.03 -15.76 16 22 C 0.13 3.13 11.17 84.73 0.95 4.08 16 23 C 0.02 0.53 7.35 22.47 0.17 0.70 16 24 F -0.12 -2.84 17.28 44.97 0.78 -2.07 16 25 C -0.01 -0.23 9.64 22.51 0.22 -0.01 16 26 C -0.23 -8.85 9.06 22.52 0.20 -8.64 16 27 H 0.27 14.83 8.31 -92.72 -0.77 14.06 16 28 H 0.12 4.48 8.06 -2.91 -0.02 4.45 16 29 H 0.16 3.35 8.06 -2.91 -0.02 3.33 16 30 H 0.15 3.46 7.94 -2.91 -0.02 3.43 16 31 H 0.44 7.87 8.95 -96.74 -0.87 7.01 16 32 H 0.19 4.69 7.52 -2.91 -0.02 4.67 16 33 H 0.20 3.55 8.06 -2.91 -0.02 3.53 16 34 H 0.18 3.31 7.84 -2.91 -0.02 3.29 16 35 H 0.12 4.82 5.70 -2.91 -0.02 4.80 16 Total: -1.00 -72.36 333.23 0.95 -71.41 By element: Atomic # 1 Polarization: 24.28 SS G_CDS: 0.31 Total: 24.60 kcal Atomic # 6 Polarization: -44.66 SS G_CDS: 4.71 Total: -39.96 kcal Atomic # 7 Polarization: -92.35 SS G_CDS: -2.02 Total: -94.37 kcal Atomic # 8 Polarization: -63.36 SS G_CDS: -4.53 Total: -67.88 kcal Atomic # 9 Polarization: -2.84 SS G_CDS: 0.78 Total: -2.07 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.38 kcal Atomic # 16 Polarization: 65.22 SS G_CDS: -0.32 Total: 64.89 kcal Total: -72.36 0.95 -71.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044261011.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.087 kcal (2) G-P(sol) polarization free energy of solvation -72.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds