Wall clock time and date at job start Tue Mar 31 2020 20:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46500 * 109.47007 * 240.00089 * 2 1 3 5 5 S 1.65601 * 119.99880 * 95.00118 * 4 2 1 6 6 O 1.42100 * 106.40132 * 178.54238 * 5 4 2 7 7 O 1.42104 * 106.40078 * 311.45711 * 5 4 2 8 8 N 1.65592 * 107.21983 * 64.99772 * 5 4 2 9 9 C 1.46503 * 119.99828 * 89.99871 * 8 5 4 10 10 C 1.46496 * 120.00162 * 270.00116 * 8 5 4 11 11 C 1.50704 * 109.47391 * 95.00134 * 10 8 5 12 12 H 1.07996 * 119.99431 * 359.97438 * 11 10 8 13 13 C 1.37868 * 120.00096 * 180.02562 * 11 10 8 14 14 N 1.31524 * 120.00119 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00104 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.46768 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47350 * 120.00111 * 15 13 11 18 18 H 1.48497 * 109.47157 * 240.00431 * 15 13 11 19 19 C 1.50701 * 109.47212 * 119.99998 * 2 1 3 20 20 C 1.33340 * 125.19113 * 260.00145 * 19 2 1 21 21 C 1.38474 * 114.93515 * 179.97438 * 20 19 2 22 22 C 1.33507 * 114.87815 * 359.97438 * 21 20 19 23 23 Cl 1.73597 * 125.20613 * 180.02562 * 22 21 20 24 24 S 1.75876 * 125.18582 * 79.69434 * 19 2 1 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 27 27 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 28 28 H 0.96996 * 119.99859 * 274.99742 * 4 2 1 29 29 H 1.09009 * 109.47038 * 90.00468 * 9 8 5 30 30 H 1.08997 * 109.47170 * 209.99885 * 9 8 5 31 31 H 1.08996 * 109.47278 * 330.00344 * 9 8 5 32 32 H 1.09001 * 109.47071 * 215.00130 * 10 8 5 33 33 H 1.08998 * 109.47384 * 335.00045 * 10 8 5 34 34 H 0.97003 * 119.99663 * 180.02562 * 14 13 11 35 35 H 1.08003 * 122.53325 * 359.97438 * 20 19 2 36 36 H 1.07994 * 122.56398 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 16 2.4121 0.1772 -2.5505 6 8 2.8775 -0.7634 -3.5085 7 8 1.3245 1.0593 -2.7921 8 7 3.7096 1.1300 -2.1620 9 6 5.0718 0.6262 -2.3538 10 6 3.4952 2.4767 -1.6266 11 6 3.5356 2.4309 -0.1208 12 1 3.7036 1.4924 0.3865 13 6 3.3569 3.5868 0.6091 14 7 3.1508 4.7295 -0.0088 15 14 3.4062 3.5300 2.4756 16 1 3.6495 2.1347 2.9220 17 1 4.4993 4.4058 2.9689 18 1 2.1084 4.0040 3.0197 19 6 2.0323 -0.7104 1.2305 20 6 2.4669 -0.1117 2.3399 21 6 2.8802 -0.9715 3.3436 22 6 2.7802 -2.2695 3.0478 23 17 3.2206 -3.5739 4.1053 24 16 2.1277 -2.4558 1.4251 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3635 0.5138 -0.8899 28 1 2.1109 -1.6561 -1.1949 29 1 5.4161 0.8819 -3.3560 30 1 5.7339 1.0790 -1.6158 31 1 5.0791 -0.4569 -2.2325 32 1 4.2784 3.1415 -1.9909 33 1 2.5234 2.8471 -1.9529 34 1 3.0254 5.5428 0.5048 35 1 2.4944 0.9626 2.4475 36 1 3.2541 -0.6190 4.2934 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000046813343.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:33 Heat of formation + Delta-G solvation = -66.427349 kcal Electronic energy + Delta-G solvation = -23934.866405 eV Core-core repulsion = 20311.908728 eV Total energy + Delta-G solvation = -3622.957677 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 338.031 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.45860 -38.35027 -37.87074 -37.22627 -36.89790 -36.67750 -34.46035 -31.47201 -29.65512 -29.24363 -26.76852 -25.37853 -24.22907 -23.13840 -21.12874 -20.07508 -19.11021 -18.77319 -18.47303 -18.04097 -17.07897 -16.84345 -16.44945 -16.00684 -15.18256 -15.13747 -14.94111 -14.60889 -14.49385 -14.34182 -13.95855 -13.91471 -13.63056 -13.52659 -13.36043 -13.19009 -13.03690 -12.90527 -12.61204 -12.58669 -12.44927 -12.39086 -12.25612 -11.98159 -11.75356 -11.56258 -11.41853 -10.68613 -10.55509 -9.78527 -9.56110 -9.50693 -8.13995 -6.26659 -0.37357 -0.19412 0.06341 0.76518 1.20464 1.44032 1.47764 1.57198 1.59102 1.99940 2.44549 2.59833 3.17042 3.41783 3.59186 4.05403 4.17724 4.32109 4.35478 4.45717 4.50924 4.72294 4.84206 4.86932 4.89838 5.06308 5.09774 5.19559 5.30600 5.33061 5.39170 5.51638 5.75982 5.85202 6.09566 6.12967 6.85690 7.42190 8.93866 Molecular weight = 338.03amu Principal moments of inertia in cm(-1) A = 0.010436 B = 0.006035 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2682.326041 B = 4638.521245 C = 6276.661780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.196 3.804 3 H 0.127 0.873 4 N -1.111 6.111 5 S 2.801 3.199 6 O -1.006 7.006 7 O -1.005 7.005 8 N -1.002 6.002 9 C 0.098 3.902 10 C 0.251 3.749 11 C -0.540 4.540 12 H 0.086 0.914 13 C 0.019 3.981 14 N -0.925 5.925 15 Si 0.928 3.072 16 H -0.220 1.220 17 H -0.292 1.292 18 H -0.282 1.282 19 C -0.165 4.165 20 C -0.142 4.142 21 C -0.114 4.114 22 C -0.159 4.159 23 Cl -0.008 7.008 24 S 0.173 5.827 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.063 0.937 28 H 0.416 0.584 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.020 0.980 33 H 0.024 0.976 34 H 0.264 0.736 35 H 0.146 0.854 36 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.689 -14.490 6.647 15.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.087 3.913 3 H 0.144 0.856 4 N -0.872 5.872 5 S 2.809 3.191 6 O -0.991 6.991 7 O -0.989 6.989 8 N -0.844 5.844 9 C -0.047 4.047 10 C 0.127 3.873 11 C -0.578 4.578 12 H 0.104 0.896 13 C -0.181 4.181 14 N -0.564 5.564 15 Si 0.753 3.247 16 H -0.143 1.143 17 H -0.219 1.219 18 H -0.208 1.208 19 C -0.285 4.285 20 C -0.172 4.172 21 C -0.146 4.146 22 C -0.302 4.302 23 Cl 0.021 6.979 24 S 0.436 5.564 25 H 0.095 0.905 26 H 0.097 0.903 27 H 0.082 0.918 28 H 0.251 0.749 29 H 0.074 0.926 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.039 0.961 33 H 0.042 0.958 34 H 0.073 0.927 35 H 0.163 0.837 36 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -1.474 -15.524 4.988 16.372 hybrid contribution 0.768 1.440 2.124 2.678 sum -0.706 -14.085 7.112 15.794 Atomic orbital electron populations 1.22317 0.93036 1.03494 1.03478 1.19815 0.95079 0.97338 0.79059 0.85628 1.55911 1.82166 1.19138 1.29964 1.01182 0.72956 0.72085 0.72893 1.93536 1.82255 1.63745 1.59514 1.93549 1.53990 1.66547 1.84788 1.57504 1.19564 1.27097 1.80196 1.21452 0.82458 0.99068 1.01755 1.18907 0.96791 0.77777 0.93782 1.21897 1.49173 0.95084 0.91684 0.89635 1.25736 0.94518 0.94943 1.02896 1.70076 1.49115 0.99691 1.37524 0.86074 0.77556 0.80434 0.80613 1.14297 1.21909 1.20757 1.24750 1.07077 0.96725 0.99930 1.20439 1.01532 1.02310 0.92960 1.20279 1.02060 0.90388 1.01871 1.25262 1.13322 0.93305 0.98338 1.98355 1.91232 1.45569 1.62788 1.83924 1.62141 1.02695 1.07677 0.90509 0.90270 0.91829 0.74897 0.92555 0.90572 0.90637 0.96142 0.95823 0.92684 0.83685 0.82040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.69 9.50 71.98 0.68 -4.00 16 2 C 0.20 6.26 2.94 44.24 0.13 6.39 16 3 H 0.13 4.85 4.23 -2.39 -0.01 4.84 16 4 N -1.11 -34.34 5.52 -172.52 -0.95 -35.29 16 5 S 2.80 105.82 6.01 -56.49 -0.34 105.48 16 6 O -1.01 -39.06 17.21 -128.00 -2.20 -41.27 16 7 O -1.01 -44.75 15.95 -128.00 -2.04 -46.79 16 8 N -1.00 -39.29 3.23 -543.22 -1.75 -41.04 16 9 C 0.10 3.15 10.31 127.77 1.32 4.47 16 10 C 0.25 11.90 5.28 85.64 0.45 12.35 16 11 C -0.54 -25.40 6.91 25.60 0.18 -25.23 16 12 H 0.09 3.73 6.53 -2.91 -0.02 3.71 16 13 C 0.02 0.96 5.46 84.65 0.46 1.43 16 14 N -0.92 -50.63 13.29 21.45 0.28 -50.35 16 15 Si 0.93 37.26 28.08 68.60 1.93 39.19 16 16 H -0.22 -7.55 5.31 99.48 0.53 -7.02 16 17 H -0.29 -12.19 7.11 99.48 0.71 -11.48 16 18 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 19 C -0.17 -4.71 5.41 24.58 0.13 -4.58 16 20 C -0.14 -4.16 9.58 21.22 0.20 -3.95 16 21 C -0.11 -2.84 10.13 21.25 0.22 -2.63 16 22 C -0.16 -3.72 7.10 66.75 0.47 -3.24 16 23 Cl -0.01 -0.16 29.29 -2.72 -0.08 -0.24 16 24 S 0.17 4.00 22.39 -56.49 -1.26 2.73 16 25 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.06 2.02 7.64 -2.39 -0.02 2.00 16 28 H 0.42 10.59 7.97 -96.75 -0.77 9.81 16 29 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 30 H 0.08 2.41 8.07 -2.39 -0.02 2.39 16 31 H 0.07 2.08 7.79 -2.39 -0.02 2.06 16 32 H 0.02 1.04 8.11 -2.39 -0.02 1.02 16 33 H 0.02 1.26 6.91 -2.39 -0.02 1.24 16 34 H 0.26 13.80 8.31 -92.71 -0.77 13.03 16 35 H 0.15 4.65 4.33 -2.91 -0.01 4.63 16 36 H 0.16 3.44 8.06 -2.91 -0.02 3.42 16 Total: -1.00 -60.10 335.48 -1.99 -62.09 By element: Atomic # 1 Polarization: 24.30 SS G_CDS: 0.18 Total: 24.49 kcal Atomic # 6 Polarization: -23.24 SS G_CDS: 4.25 Total: -19.00 kcal Atomic # 7 Polarization: -124.26 SS G_CDS: -2.42 Total: -126.68 kcal Atomic # 8 Polarization: -83.82 SS G_CDS: -4.24 Total: -88.06 kcal Atomic # 14 Polarization: 37.26 SS G_CDS: 1.93 Total: 39.19 kcal Atomic # 16 Polarization: 109.82 SS G_CDS: -1.60 Total: 108.22 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -0.08 Total: -0.24 kcal Total: -60.10 -1.99 -62.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046813343.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.340 kcal (2) G-P(sol) polarization free energy of solvation -60.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds