Wall clock time and date at job start Tue Mar 31 2020 20:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47117 * 2 1 4 4 N 1.46507 * 109.47023 * 119.99893 * 2 1 3 5 5 S 1.65602 * 119.99709 * 245.27923 * 4 2 1 6 6 O 1.42098 * 106.40305 * 47.68774 * 5 4 2 7 7 O 1.42098 * 106.39842 * 180.60461 * 5 4 2 8 8 N 1.65604 * 107.21705 * 294.14303 * 5 4 2 9 9 C 1.46502 * 119.99928 * 92.09656 * 8 5 4 10 10 C 1.46499 * 120.00066 * 272.09629 * 8 5 4 11 11 C 1.50696 * 109.47311 * 95.26769 * 10 8 5 12 12 H 1.08005 * 119.99857 * 5.11308 * 11 10 8 13 13 C 1.37878 * 120.00286 * 185.10090 * 11 10 8 14 14 N 1.31518 * 119.99804 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99870 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47291 * 0.02562 * 15 13 11 17 17 H 1.48508 * 109.46933 * 120.00109 * 15 13 11 18 18 H 1.48496 * 109.47179 * 239.99826 * 15 13 11 19 19 C 1.50702 * 109.47200 * 239.99731 * 2 1 3 20 20 C 1.33342 * 125.18682 * 99.72755 * 19 2 1 21 21 C 1.38477 * 114.93009 * 179.79138 * 20 19 2 22 22 C 1.33500 * 114.88204 * 0.49749 * 21 20 19 23 23 Cl 1.73603 * 125.20875 * 179.71637 * 22 21 20 24 24 S 1.75881 * 125.18966 * 280.02061 * 19 2 1 25 25 H 1.09008 * 109.47203 * 175.55611 * 1 2 3 26 26 H 1.08993 * 109.47492 * 295.55666 * 1 2 3 27 27 H 1.08999 * 109.46806 * 55.56259 * 1 2 3 28 28 H 0.97001 * 119.99617 * 65.27447 * 4 2 1 29 29 H 1.08997 * 109.46542 * 89.99708 * 9 8 5 30 30 H 1.08995 * 109.46482 * 209.99951 * 9 8 5 31 31 H 1.09001 * 109.46976 * 330.00147 * 9 8 5 32 32 H 1.08997 * 109.47392 * 215.27517 * 10 8 5 33 33 H 1.09014 * 109.46966 * 335.27327 * 10 8 5 34 34 H 0.96995 * 119.99492 * 180.02562 * 14 13 11 35 35 H 1.08006 * 122.53719 * 359.96586 * 20 19 2 36 36 H 1.08001 * 122.55742 * 180.22655 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 16 2.8598 0.1473 2.3505 6 8 2.1164 1.3303 2.6093 7 8 3.2007 -0.7929 3.3600 8 7 4.2858 0.6322 1.6622 9 6 4.3788 1.9440 1.0167 10 6 5.4543 -0.2507 1.6987 11 6 5.5273 -1.0406 0.4175 12 1 4.8278 -0.8408 -0.3808 13 6 6.4874 -2.0183 0.2641 14 7 7.3391 -2.2618 1.2362 15 14 6.5783 -2.9970 -1.3244 16 1 5.5165 -2.5330 -2.2531 17 1 7.9083 -2.7963 -1.9540 18 1 6.3829 -4.4391 -1.0292 19 6 2.0323 -0.7105 -1.2304 20 6 2.4621 -0.1118 -2.3417 21 6 2.8813 -0.9716 -3.3431 22 6 2.7816 -2.2695 -3.0472 23 17 3.2228 -3.5739 -4.1045 24 16 2.1344 -2.4558 -1.4224 25 1 -0.3634 -1.0246 -0.0796 26 1 -0.3634 0.4433 0.9270 27 1 -0.3633 0.5812 -0.8476 28 1 1.8487 -1.6386 1.3121 29 1 4.6904 2.6882 1.7496 30 1 5.1099 1.9006 0.2095 31 1 3.4053 2.2192 0.6109 32 1 6.3586 0.3478 1.8087 33 1 5.3665 -0.9349 2.5429 34 1 8.0146 -2.9494 1.1281 35 1 2.4843 0.9624 -2.4515 36 1 3.2560 -0.6190 -4.2927 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000046813345.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:37 Heat of formation + Delta-G solvation = -48.988981 kcal Electronic energy + Delta-G solvation = -24037.501004 eV Core-core repulsion = 20415.299512 eV Total energy + Delta-G solvation = -3622.201493 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 338.031 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -38.29777 -36.87700 -36.60729 -35.60767 -35.45048 -35.27649 -32.46280 -30.29650 -28.21374 -27.79452 -25.10075 -24.25715 -22.30649 -22.07017 -19.89372 -18.66758 -17.84526 -17.24292 -16.73840 -16.33859 -15.73526 -15.52542 -15.00954 -14.35755 -13.94478 -13.77576 -13.48784 -13.40732 -13.21615 -13.10068 -12.54171 -12.44903 -12.29305 -12.15536 -11.80830 -11.62418 -11.55148 -11.40789 -11.21570 -11.13837 -11.09872 -10.92031 -10.69240 -10.55115 -10.51471 -10.07336 -9.72934 -9.48015 -8.47205 -8.42325 -8.32186 -8.04880 -6.08261 -4.14039 0.92550 1.16067 1.32891 1.97802 2.35626 2.73488 3.26934 3.37018 3.39630 3.46746 4.10500 4.41031 4.58478 4.89095 4.99068 5.16656 5.27064 5.34490 5.40803 5.51502 5.59438 5.73762 5.91484 6.01702 6.05861 6.09401 6.19148 6.26009 6.45993 6.52500 7.10210 7.35150 7.43916 7.62987 7.89009 8.17308 8.92126 9.52953 10.99688 Molecular weight = 338.03amu Principal moments of inertia in cm(-1) A = 0.010885 B = 0.007012 C = 0.004893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2571.795099 B = 3992.042373 C = 5720.580877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.230 3.770 3 H 0.104 0.896 4 N -1.120 6.120 5 S 2.786 3.214 6 O -0.998 6.998 7 O -0.976 6.976 8 N -0.994 5.994 9 C 0.105 3.895 10 C 0.244 3.756 11 C -0.532 4.532 12 H 0.066 0.934 13 C 0.068 3.932 14 N -0.891 5.891 15 Si 0.875 3.125 16 H -0.257 1.257 17 H -0.287 1.287 18 H -0.284 1.284 19 C -0.170 4.170 20 C -0.126 4.126 21 C -0.115 4.115 22 C -0.147 4.147 23 Cl -0.025 7.025 24 S 0.175 5.825 25 H 0.062 0.938 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.413 0.587 29 H 0.045 0.955 30 H 0.074 0.926 31 H 0.051 0.949 32 H 0.035 0.965 33 H 0.053 0.947 34 H 0.262 0.738 35 H 0.146 0.854 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.313 3.758 -8.279 15.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.120 3.880 3 H 0.121 0.879 4 N -0.877 5.877 5 S 2.794 3.206 6 O -0.982 6.982 7 O -0.960 6.960 8 N -0.837 5.837 9 C -0.042 4.042 10 C 0.122 3.878 11 C -0.571 4.571 12 H 0.085 0.915 13 C -0.135 4.135 14 N -0.529 5.529 15 Si 0.702 3.298 16 H -0.180 1.180 17 H -0.213 1.213 18 H -0.210 1.210 19 C -0.290 4.290 20 C -0.156 4.156 21 C -0.147 4.147 22 C -0.291 4.291 23 Cl 0.003 6.997 24 S 0.438 5.562 25 H 0.081 0.919 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.246 0.754 29 H 0.064 0.936 30 H 0.093 0.907 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.164 0.836 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -12.703 2.650 -6.521 14.522 hybrid contribution 1.008 -0.178 -2.421 2.629 sum -11.695 2.472 -8.942 14.928 Atomic orbital electron populations 1.22240 0.93569 1.02939 1.03129 1.19033 0.94360 0.94686 0.79907 0.87868 1.56271 1.72821 1.22609 1.35985 1.01766 0.72620 0.72891 0.73340 1.93551 1.71727 1.48572 1.84319 1.93601 1.83516 1.63490 1.55365 1.57597 1.27858 1.24927 1.73273 1.21267 1.01329 0.83732 0.97859 1.19248 0.81939 0.88293 0.98327 1.21573 1.16062 1.18343 1.01158 0.91536 1.24895 0.95496 0.96791 0.96347 1.69945 1.18414 1.32663 1.31926 0.86766 0.78466 0.80276 0.84289 1.18025 1.21328 1.20971 1.24883 1.07515 0.96496 1.00072 1.19787 1.02335 1.01069 0.92458 1.20053 1.02577 0.90463 1.01629 1.25149 1.13081 0.93084 0.97816 1.98344 1.91509 1.46626 1.63221 1.84230 1.60916 1.03884 1.07123 0.91918 0.90895 0.91122 0.75409 0.93643 0.90714 0.93074 0.94720 0.92897 0.92790 0.83613 0.83790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.50 37.16 0.35 -1.31 16 2 C 0.23 3.02 3.32 -69.08 -0.23 2.79 16 3 H 0.10 1.28 6.28 -51.93 -0.33 0.96 16 4 N -1.12 -17.53 5.32 -5.88 -0.03 -17.56 16 5 S 2.79 52.99 5.98 -107.50 -0.64 52.35 16 6 O -1.00 -19.20 16.76 -57.17 -0.96 -20.16 16 7 O -0.98 -22.17 16.73 -57.17 -0.96 -23.13 16 8 N -0.99 -19.66 3.23 -123.05 -0.40 -20.06 16 9 C 0.10 1.69 10.31 59.85 0.62 2.30 16 10 C 0.24 5.91 5.42 -5.20 -0.03 5.88 16 11 C -0.53 -13.48 9.38 -34.44 -0.32 -13.80 16 12 H 0.07 1.62 7.81 -52.48 -0.41 1.21 16 13 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 14 N -0.89 -25.54 13.29 55.43 0.74 -24.80 16 15 Si 0.87 20.77 29.54 -169.99 -5.02 15.75 16 16 H -0.26 -5.75 6.93 56.52 0.39 -5.36 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 C -0.17 -2.35 5.45 -36.02 -0.20 -2.55 16 20 C -0.13 -1.63 10.04 -41.20 -0.41 -2.05 16 21 C -0.11 -1.58 10.13 -41.15 -0.42 -2.00 16 22 C -0.15 -2.24 6.92 29.07 0.20 -2.04 16 23 Cl -0.03 -0.37 29.29 -51.86 -1.52 -1.89 16 24 S 0.17 2.63 22.73 -107.50 -2.44 0.18 16 25 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.41 6.10 8.52 -34.48 -0.29 5.81 16 29 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 31 H 0.05 0.69 6.30 -51.93 -0.33 0.36 16 32 H 0.03 0.88 8.11 -51.93 -0.42 0.45 16 33 H 0.05 1.43 6.94 -51.92 -0.36 1.07 16 34 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 35 H 0.15 1.50 8.06 -52.48 -0.42 1.08 16 36 H 0.14 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 348.96 15.07 5.26 5.26 Total: -1.00 -31.84 348.96 -10.75 -42.59 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -4.24 Total: 2.51 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: -0.53 Total: -11.04 kcal Atomic # 7 Polarization: -62.73 SS G_CDS: 0.31 Total: -62.42 kcal Atomic # 8 Polarization: -41.37 SS G_CDS: -1.91 Total: -43.29 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: 55.62 SS G_CDS: -3.09 Total: 52.53 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -1.52 Total: -1.89 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.84 -10.75 -42.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046813345.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.403 kcal (2) G-P(sol) polarization free energy of solvation -31.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds