Wall clock time and date at job start Tue Mar 31 2020 20:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47117 * 2 1 4 4 N 1.46507 * 109.47023 * 119.99893 * 2 1 3 5 5 S 1.65602 * 119.99709 * 245.27923 * 4 2 1 6 6 O 1.42098 * 106.40305 * 47.68774 * 5 4 2 7 7 O 1.42098 * 106.39842 * 180.60461 * 5 4 2 8 8 N 1.65604 * 107.21705 * 294.14303 * 5 4 2 9 9 C 1.46502 * 119.99928 * 92.09656 * 8 5 4 10 10 C 1.46499 * 120.00066 * 272.09629 * 8 5 4 11 11 C 1.50696 * 109.47311 * 95.26769 * 10 8 5 12 12 H 1.08005 * 119.99857 * 5.11308 * 11 10 8 13 13 C 1.37878 * 120.00286 * 185.10090 * 11 10 8 14 14 N 1.31518 * 119.99804 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99870 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47291 * 0.02562 * 15 13 11 17 17 H 1.48508 * 109.46933 * 120.00109 * 15 13 11 18 18 H 1.48496 * 109.47179 * 239.99826 * 15 13 11 19 19 C 1.50702 * 109.47200 * 239.99731 * 2 1 3 20 20 C 1.33342 * 125.18682 * 99.72755 * 19 2 1 21 21 C 1.38477 * 114.93009 * 179.79138 * 20 19 2 22 22 C 1.33500 * 114.88204 * 0.49749 * 21 20 19 23 23 Cl 1.73603 * 125.20875 * 179.71637 * 22 21 20 24 24 S 1.75881 * 125.18966 * 280.02061 * 19 2 1 25 25 H 1.09008 * 109.47203 * 175.55611 * 1 2 3 26 26 H 1.08993 * 109.47492 * 295.55666 * 1 2 3 27 27 H 1.08999 * 109.46806 * 55.56259 * 1 2 3 28 28 H 0.97001 * 119.99617 * 65.27447 * 4 2 1 29 29 H 1.08997 * 109.46542 * 89.99708 * 9 8 5 30 30 H 1.08995 * 109.46482 * 209.99951 * 9 8 5 31 31 H 1.09001 * 109.46976 * 330.00147 * 9 8 5 32 32 H 1.08997 * 109.47392 * 215.27517 * 10 8 5 33 33 H 1.09014 * 109.46966 * 335.27327 * 10 8 5 34 34 H 0.96995 * 119.99492 * 180.02562 * 14 13 11 35 35 H 1.08006 * 122.53719 * 359.96586 * 20 19 2 36 36 H 1.08001 * 122.55742 * 180.22655 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 16 2.8598 0.1473 2.3505 6 8 2.1164 1.3303 2.6093 7 8 3.2007 -0.7929 3.3600 8 7 4.2858 0.6322 1.6622 9 6 4.3788 1.9440 1.0167 10 6 5.4543 -0.2507 1.6987 11 6 5.5273 -1.0406 0.4175 12 1 4.8278 -0.8408 -0.3808 13 6 6.4874 -2.0183 0.2641 14 7 7.3391 -2.2618 1.2362 15 14 6.5783 -2.9970 -1.3244 16 1 5.5165 -2.5330 -2.2531 17 1 7.9083 -2.7963 -1.9540 18 1 6.3829 -4.4391 -1.0292 19 6 2.0323 -0.7105 -1.2304 20 6 2.4621 -0.1118 -2.3417 21 6 2.8813 -0.9716 -3.3431 22 6 2.7816 -2.2695 -3.0472 23 17 3.2228 -3.5739 -4.1045 24 16 2.1344 -2.4558 -1.4224 25 1 -0.3634 -1.0246 -0.0796 26 1 -0.3634 0.4433 0.9270 27 1 -0.3633 0.5812 -0.8476 28 1 1.8487 -1.6386 1.3121 29 1 4.6904 2.6882 1.7496 30 1 5.1099 1.9006 0.2095 31 1 3.4053 2.2192 0.6109 32 1 6.3586 0.3478 1.8087 33 1 5.3665 -0.9349 2.5429 34 1 8.0146 -2.9494 1.1281 35 1 2.4843 0.9624 -2.4515 36 1 3.2560 -0.6190 -4.2927 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000046813345.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:36 Heat of formation + Delta-G solvation = -70.724082 kcal Electronic energy + Delta-G solvation = -24038.443509 eV Core-core repulsion = 20415.299512 eV Total energy + Delta-G solvation = -3623.143998 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 338.031 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.35230 -38.32539 -37.84598 -37.16877 -36.89302 -36.66234 -34.43639 -31.43158 -29.60925 -29.17147 -26.72682 -25.27795 -24.15440 -23.11688 -21.06884 -20.00523 -19.01996 -18.73335 -18.45759 -18.10315 -17.14623 -16.66522 -16.54749 -15.96262 -15.13938 -14.98850 -14.92106 -14.77654 -14.44589 -14.15968 -13.96053 -13.92541 -13.54252 -13.45896 -13.33721 -13.18495 -13.01070 -12.86785 -12.61781 -12.54163 -12.43946 -12.35531 -12.30153 -11.98806 -11.82594 -11.63849 -11.58047 -10.74547 -10.54821 -9.75038 -9.47137 -9.42240 -8.14031 -6.24224 -0.31653 -0.12028 0.18341 0.91233 1.26324 1.37257 1.44041 1.54089 1.69108 2.02940 2.43834 2.63166 3.20016 3.44781 3.55948 3.92982 4.18610 4.22560 4.33335 4.42854 4.59244 4.75792 4.87300 4.91330 4.97126 5.10122 5.13126 5.18282 5.32903 5.34008 5.45253 5.52319 5.78493 5.87388 6.07369 6.15215 6.89909 7.46037 8.94296 Molecular weight = 338.03amu Principal moments of inertia in cm(-1) A = 0.010885 B = 0.007012 C = 0.004893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2571.795099 B = 3992.042373 C = 5720.580877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.223 3.777 3 H 0.116 0.884 4 N -1.115 6.115 5 S 2.802 3.198 6 O -0.998 6.998 7 O -1.019 7.019 8 N -0.999 5.999 9 C 0.094 3.906 10 C 0.257 3.743 11 C -0.518 4.518 12 H 0.080 0.920 13 C 0.018 3.982 14 N -0.931 5.931 15 Si 0.925 3.075 16 H -0.235 1.235 17 H -0.290 1.290 18 H -0.292 1.292 19 C -0.171 4.171 20 C -0.123 4.123 21 C -0.112 4.112 22 C -0.169 4.169 23 Cl -0.028 7.028 24 S 0.136 5.864 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.095 0.905 28 H 0.416 0.584 29 H 0.055 0.945 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.020 0.980 33 H 0.018 0.982 34 H 0.261 0.739 35 H 0.179 0.821 36 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.743 5.367 -10.247 17.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.114 3.886 3 H 0.134 0.866 4 N -0.875 5.875 5 S 2.810 3.190 6 O -0.981 6.981 7 O -1.003 7.003 8 N -0.841 5.841 9 C -0.051 4.051 10 C 0.134 3.866 11 C -0.557 4.557 12 H 0.098 0.902 13 C -0.181 4.181 14 N -0.572 5.572 15 Si 0.751 3.249 16 H -0.158 1.158 17 H -0.217 1.217 18 H -0.219 1.219 19 C -0.291 4.291 20 C -0.153 4.153 21 C -0.144 4.144 22 C -0.312 4.312 23 Cl 0.001 6.999 24 S 0.399 5.601 25 H 0.084 0.916 26 H 0.091 0.909 27 H 0.113 0.887 28 H 0.251 0.749 29 H 0.074 0.926 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.038 0.962 33 H 0.036 0.964 34 H 0.070 0.930 35 H 0.196 0.804 36 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -14.160 4.290 -8.507 17.067 hybrid contribution 1.380 -0.598 -1.825 2.365 sum -12.780 3.692 -10.332 16.844 Atomic orbital electron populations 1.22234 0.91322 1.03742 1.04182 1.19395 0.96146 0.94732 0.78359 0.86600 1.56027 1.72069 1.22861 1.36499 1.01133 0.72393 0.72417 0.73082 1.93546 1.71407 1.48623 1.84518 1.93543 1.84216 1.64761 1.57782 1.57475 1.26836 1.25862 1.73955 1.21553 1.03348 0.82029 0.98166 1.18783 0.83029 0.88119 0.96712 1.21845 1.15133 1.17314 1.01421 0.90196 1.25599 0.95636 0.98120 0.98754 1.70065 1.19543 1.33718 1.33901 0.85966 0.78693 0.78544 0.81659 1.15775 1.21708 1.21876 1.24993 1.07966 0.95415 1.00725 1.20166 1.00918 1.02621 0.91590 1.20429 1.01433 0.89989 1.02576 1.25338 1.14387 0.93723 0.97786 1.98339 1.91563 1.46888 1.63139 1.84367 1.61875 1.05797 1.08053 0.91594 0.90944 0.88669 0.74935 0.92625 0.90503 0.89937 0.96218 0.96383 0.93037 0.80415 0.81748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 9.50 71.98 0.68 -2.04 16 2 C 0.22 5.14 3.32 44.24 0.15 5.29 16 3 H 0.12 2.38 6.28 -2.39 -0.02 2.37 16 4 N -1.12 -32.99 5.32 -172.52 -0.92 -33.91 16 5 S 2.80 103.52 5.98 -56.49 -0.34 103.19 16 6 O -1.00 -36.21 16.76 -128.00 -2.14 -38.35 16 7 O -1.02 -46.88 16.73 -128.00 -2.14 -49.02 16 8 N -1.00 -38.30 3.23 -543.22 -1.75 -40.06 16 9 C 0.09 2.78 10.31 127.77 1.32 4.10 16 10 C 0.26 12.54 5.42 85.63 0.46 13.00 16 11 C -0.52 -25.84 9.38 25.60 0.24 -25.60 16 12 H 0.08 3.71 7.81 -2.91 -0.02 3.69 16 13 C 0.02 0.96 5.46 84.65 0.46 1.42 16 14 N -0.93 -54.34 13.29 21.45 0.28 -54.05 16 15 Si 0.93 42.36 29.54 68.60 2.03 44.39 16 16 H -0.24 -9.81 6.93 99.48 0.69 -9.12 16 17 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 18 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 19 C -0.17 -4.22 5.45 24.58 0.13 -4.09 16 20 C -0.12 -2.68 10.04 21.22 0.21 -2.47 16 21 C -0.11 -2.69 10.13 21.25 0.22 -2.47 16 22 C -0.17 -4.74 6.92 66.75 0.46 -4.28 16 23 Cl -0.03 -0.76 29.29 -2.72 -0.08 -0.84 16 24 S 0.14 3.86 22.73 -56.49 -1.28 2.58 16 25 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 26 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.42 11.95 8.52 -96.74 -0.82 11.12 16 29 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.08 2.24 8.07 -2.39 -0.02 2.22 16 31 H 0.08 1.90 6.30 -2.39 -0.02 1.89 16 32 H 0.02 1.01 8.11 -2.39 -0.02 0.99 16 33 H 0.02 1.01 6.94 -2.38 -0.02 1.00 16 34 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 35 H 0.18 2.69 8.06 -2.91 -0.02 2.67 16 36 H 0.17 3.22 8.06 -2.91 -0.02 3.19 16 Total: -1.00 -68.28 348.96 -1.73 -70.02 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: 0.28 Total: 13.22 kcal Atomic # 6 Polarization: -21.49 SS G_CDS: 4.34 Total: -17.15 kcal Atomic # 7 Polarization: -125.63 SS G_CDS: -2.39 Total: -128.01 kcal Atomic # 8 Polarization: -83.09 SS G_CDS: -4.29 Total: -87.38 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Atomic # 16 Polarization: 107.38 SS G_CDS: -1.62 Total: 105.76 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -0.08 Total: -0.84 kcal Total: -68.28 -1.73 -70.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046813345.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.709 kcal (2) G-P(sol) polarization free energy of solvation -68.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds