Wall clock time and date at job start Tue Mar 31 2020 20:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31570 * 122.23280 * 2 1 4 4 C 1.29980 * 117.14062 * 180.26812 * 3 2 1 5 5 N 1.38745 * 125.36449 * 179.97438 * 4 3 2 6 6 C 1.34780 * 120.00026 * 180.02562 * 5 4 3 7 7 O 1.21568 * 119.99753 * 359.97438 * 6 5 4 8 8 C 1.47863 * 120.00498 * 180.02562 * 6 5 4 9 9 C 1.40011 * 120.12305 * 179.72242 * 8 6 5 10 10 C 1.38400 * 117.96709 * 179.73771 * 9 8 6 11 11 C 1.39360 * 118.03957 * 0.52487 * 10 9 8 12 12 O 1.35526 * 120.02502 * 179.74750 * 11 10 9 13 13 N 1.32669 * 119.94759 * 359.73006 * 11 10 9 14 14 N 1.28355 * 122.20365 * 359.97438 * 13 11 10 15 15 S 1.76137 * 109.26738 * 0.02562 * 4 3 2 16 16 C 1.34685 * 122.23053 * 180.28576 * 2 1 3 17 17 S 1.76202 * 125.92619 * 359.75220 * 16 2 1 18 18 C 1.76205 * 99.99711 * 180.02562 * 17 16 2 19 19 H 1.08003 * 120.00141 * 0.02562 * 18 17 16 20 20 C 1.38426 * 120.00020 * 179.97438 * 18 17 16 21 21 N 1.31813 * 120.00136 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00142 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.46909 * 60.00092 * 22 20 18 24 24 H 1.48496 * 109.47015 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47040 * 300.00131 * 22 20 18 26 26 H 1.09001 * 109.46802 * 269.71659 * 1 2 3 27 27 H 1.09002 * 109.46827 * 29.71218 * 1 2 3 28 28 H 1.08998 * 109.46997 * 149.71770 * 1 2 3 29 29 H 0.96999 * 120.00268 * 359.97438 * 5 4 3 30 30 H 1.08004 * 121.01375 * 359.97438 * 9 8 6 31 31 H 1.08003 * 120.97918 * 180.28084 * 10 9 8 32 32 H 0.96699 * 114.00047 * 269.97934 * 12 11 10 33 33 H 0.96997 * 120.00114 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2088 1.1129 0.0000 4 6 3.5034 0.9976 -0.0054 5 7 4.4037 2.0533 -0.0068 6 6 5.7291 1.8087 -0.0132 7 8 6.1357 0.6630 -0.0171 8 6 6.6886 2.9337 -0.0141 9 6 8.0660 2.6824 -0.0148 10 6 8.9239 3.7685 -0.0213 11 6 8.3648 5.0450 -0.0155 12 8 9.1675 6.1369 -0.0163 13 7 7.0461 5.1904 -0.0095 14 7 6.2471 4.1859 -0.0092 15 16 3.9348 -0.7102 -0.0121 16 6 2.2253 -1.1393 -0.0057 17 16 1.5698 -2.7748 -0.0077 18 6 3.0667 -3.7044 -0.0149 19 1 4.0189 -3.1947 -0.0162 20 6 3.0222 -5.0879 -0.0177 21 7 1.8601 -5.7100 -0.0155 22 14 4.6091 -6.0734 -0.0260 23 1 5.4036 -5.7425 1.1841 24 1 4.2910 -7.5239 -0.0285 25 1 5.3942 -5.7372 -1.2408 26 1 -0.3633 -0.0051 1.0277 27 1 -0.3633 0.8926 -0.5094 28 1 -0.3633 -0.8874 -0.5182 29 1 4.0793 2.9674 -0.0041 30 1 8.4474 1.6719 -0.0143 31 1 9.9951 3.6307 -0.0267 32 1 9.4043 6.4517 0.8668 33 1 1.8290 -6.6795 -0.0170 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048598265.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:33 Heat of formation + Delta-G solvation = 3.223161 kcal Electronic energy + Delta-G solvation = -22640.062199 eV Core-core repulsion = 18919.017300 eV Total energy + Delta-G solvation = -3721.044898 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 338.029 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.61903 -41.27970 -40.16319 -38.67782 -36.36889 -34.80479 -34.46151 -33.10154 -31.83913 -28.81025 -27.72036 -27.15813 -25.86935 -24.71342 -22.78494 -21.72433 -20.34603 -20.13897 -19.46865 -18.87653 -18.41635 -17.44570 -17.38959 -17.06352 -16.92491 -16.78157 -15.78937 -15.73741 -15.35181 -15.00824 -14.94454 -14.62035 -14.39563 -13.57150 -13.52387 -13.41542 -13.29282 -13.12111 -13.04456 -12.86256 -12.43755 -12.18623 -12.03778 -11.60800 -11.56143 -11.34993 -11.03222 -10.86503 -10.77147 -10.51430 -10.50532 -9.54938 -8.56168 -8.38063 -6.29067 -1.01245 -0.47273 -0.22192 0.15503 0.77026 1.09433 1.26287 1.31098 1.38325 1.43105 1.57688 1.91317 2.10283 2.15985 2.31435 2.65492 2.83471 3.10087 3.25942 3.46254 3.61629 3.71567 3.82468 4.39876 4.42716 4.59629 4.68194 4.84576 4.86145 4.95000 4.99440 5.30471 5.44243 5.72064 6.02932 6.41830 6.47237 6.82104 6.88145 7.21584 8.51147 Molecular weight = 338.03amu Principal moments of inertia in cm(-1) A = 0.016592 B = 0.002927 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.180209 B = 9562.648954 C =11232.118509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.037 3.963 3 N -0.479 5.479 4 C 0.216 3.784 5 N -0.588 5.588 6 C 0.576 3.424 7 O -0.515 6.515 8 C 0.008 3.992 9 C -0.041 4.041 10 C -0.113 4.113 11 C 0.286 3.714 12 O -0.473 6.473 13 N -0.283 5.283 14 N -0.196 5.196 15 S 0.176 5.824 16 C -0.277 4.277 17 S 0.107 5.893 18 C -0.577 4.577 19 H 0.083 0.917 20 C 0.035 3.965 21 N -0.896 5.896 22 Si 0.986 3.014 23 H -0.263 1.263 24 H -0.267 1.267 25 H -0.263 1.263 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.070 0.930 29 H 0.437 0.563 30 H 0.186 0.814 31 H 0.210 0.790 32 H 0.435 0.565 33 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.043 18.977 1.855 24.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.105 4.105 3 N -0.201 5.201 4 C -0.156 4.156 5 N -0.238 5.238 6 C 0.360 3.640 7 O -0.388 6.388 8 C -0.139 4.139 9 C -0.069 4.069 10 C -0.142 4.142 11 C 0.101 3.899 12 O -0.284 6.284 13 N -0.138 5.138 14 N -0.045 5.045 15 S 0.420 5.580 16 C -0.512 4.512 17 S 0.355 5.645 18 C -0.725 4.725 19 H 0.101 0.899 20 C -0.172 4.172 21 N -0.530 5.530 22 Si 0.807 3.193 23 H -0.187 1.187 24 H -0.191 1.191 25 H -0.188 1.188 26 H 0.098 0.902 27 H 0.104 0.896 28 H 0.088 0.912 29 H 0.279 0.721 30 H 0.203 0.797 31 H 0.227 0.773 32 H 0.300 0.700 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 13.601 18.434 1.282 22.944 hybrid contribution 1.926 -0.530 0.426 2.043 sum 15.527 17.904 1.709 23.761 Atomic orbital electron populations 1.20261 0.85594 1.03199 1.03183 1.19695 0.98447 0.84006 1.08358 1.65991 1.02760 1.31717 1.19586 1.23969 0.90174 0.92739 1.08735 1.42214 1.03827 1.08692 1.69106 1.17929 0.81090 0.88296 0.76671 1.90825 1.77346 1.21767 1.48897 1.22131 0.94288 0.92699 1.04770 1.22660 0.90163 1.03681 0.90445 1.22971 1.04901 0.89647 0.96699 1.21245 0.88424 0.88450 0.91733 1.84710 1.63780 1.43192 1.36719 1.73014 1.04174 1.23549 1.13021 1.73218 1.29282 0.95749 1.06296 1.85808 1.02176 0.97042 1.72961 1.28642 1.01608 1.06129 1.14867 1.82951 1.11213 0.85938 1.84433 1.23439 0.93896 0.94821 1.60387 0.89863 1.25906 1.01447 0.97450 0.92417 1.70087 1.26247 1.10796 1.45862 0.85169 0.77272 0.77134 0.79744 1.18730 1.19082 1.18801 0.90224 0.89591 0.91167 0.72060 0.79697 0.77340 0.70026 0.90897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.13 10.02 71.24 0.71 -1.42 16 2 C 0.04 1.52 6.73 41.78 0.28 1.81 16 3 N -0.48 -18.86 10.55 -184.95 -1.95 -20.81 16 4 C 0.22 8.19 8.39 179.19 1.50 9.69 16 5 N -0.59 -17.65 5.38 -312.21 -1.68 -19.33 16 6 C 0.58 16.13 7.77 86.79 0.67 16.81 16 7 O -0.51 -17.11 13.90 -3.93 -0.05 -17.17 16 8 C 0.01 0.17 6.83 41.98 0.29 0.46 16 9 C -0.04 -0.56 9.72 22.74 0.22 -0.34 16 10 C -0.11 -0.92 10.14 22.58 0.23 -0.69 16 11 C 0.29 3.58 7.85 84.84 0.67 4.24 16 12 O -0.47 -3.63 13.56 -88.30 -1.20 -4.83 16 13 N -0.28 -5.62 11.54 -170.00 -1.96 -7.58 16 14 N -0.20 -4.31 10.73 -48.53 -0.52 -4.83 16 15 S 0.18 7.64 18.34 -56.49 -1.04 6.61 16 16 C -0.28 -12.84 6.67 67.00 0.45 -12.39 16 17 S 0.11 5.49 20.74 -56.49 -1.17 4.31 16 18 C -0.58 -31.91 9.26 67.86 0.63 -31.28 16 19 H 0.08 4.54 5.97 -2.91 -0.02 4.52 16 20 C 0.04 1.89 5.49 84.74 0.47 2.36 16 21 N -0.90 -50.04 13.22 21.59 0.29 -49.75 16 22 Si 0.99 42.00 29.55 68.60 2.03 44.03 16 23 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 24 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 25 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 26 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 27 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 28 H 0.07 2.42 7.38 -2.39 -0.02 2.41 16 29 H 0.44 11.22 8.17 -92.71 -0.76 10.46 16 30 H 0.19 2.03 7.71 -2.91 -0.02 2.01 16 31 H 0.21 -0.09 8.06 -2.91 -0.02 -0.11 16 32 H 0.44 -1.42 9.06 -74.06 -0.67 -2.09 16 33 H 0.28 14.55 8.32 -92.71 -0.77 13.78 16 Total: -1.00 -73.23 328.67 -1.34 -74.57 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -0.20 Total: 5.53 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: 6.12 Total: -10.76 kcal Atomic # 7 Polarization: -96.47 SS G_CDS: -5.83 Total: -102.29 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -1.25 Total: -22.00 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Atomic # 16 Polarization: 13.13 SS G_CDS: -2.21 Total: 10.92 kcal Total: -73.23 -1.34 -74.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048598265.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.795 kcal (2) G-P(sol) polarization free energy of solvation -73.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds