Wall clock time and date at job start Tue Mar 31 2020 20:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00568 * 2 1 4 4 H 1.48497 * 109.47234 * 269.99749 * 3 2 1 5 5 H 1.48496 * 109.47012 * 30.00112 * 3 2 1 6 6 H 1.48498 * 109.47032 * 149.99718 * 3 2 1 7 7 C 1.37878 * 119.99548 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00532 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00037 * 0.02562 * 7 2 1 10 10 N 1.46495 * 109.47342 * 180.02562 * 9 7 2 11 11 C 1.34779 * 120.00311 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99801 * 359.97438 * 11 10 9 13 13 C 1.50697 * 120.00425 * 179.97438 * 11 10 9 14 14 N 1.46896 * 109.47618 * 185.77710 * 13 11 10 15 15 C 1.47916 * 110.99570 * 75.77966 * 14 13 11 16 16 C 1.54602 * 102.62408 * 94.47803 * 15 14 13 17 17 C 1.51575 * 102.90742 * 25.29838 * 16 15 14 18 18 C 1.37929 * 131.54019 * 163.33844 * 17 16 15 19 19 C 1.38378 * 120.07386 * 181.05015 * 18 17 16 20 20 Br 1.89093 * 120.06840 * 180.23853 * 19 18 17 21 21 C 1.38376 * 119.86260 * 0.25668 * 19 18 17 22 22 C 1.37911 * 120.25537 * 359.83227 * 21 19 18 23 23 C 1.38960 * 107.96087 * 344.50335 * 17 16 15 24 24 H 0.97001 * 119.99455 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47219 * 59.99825 * 9 7 2 26 26 H 1.09006 * 109.47365 * 300.00195 * 9 7 2 27 27 H 0.97004 * 120.00347 * 359.97438 * 10 9 7 28 28 H 1.09003 * 109.46818 * 65.77883 * 13 11 10 29 29 H 1.09003 * 109.47346 * 305.78435 * 13 11 10 30 30 H 1.08996 * 110.77839 * 212.75779 * 15 14 13 31 31 H 1.08999 * 110.78063 * 336.19081 * 15 14 13 32 32 H 1.08999 * 110.73518 * 143.85190 * 16 15 14 33 33 H 1.08996 * 110.73306 * 266.99080 * 16 15 14 34 34 H 1.07999 * 119.95932 * 1.32369 * 18 17 16 35 35 H 1.08001 * 119.87519 * 179.84846 * 21 19 18 36 36 H 1.07998 * 119.89917 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4969 2.0463 -1.4000 5 1 1.4469 2.6526 0.7000 6 1 3.5468 1.4399 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1943 0.0010 9 6 1.2508 -2.4992 0.0005 10 7 2.2027 -3.6128 0.0018 11 6 1.7534 -4.8835 0.0015 12 8 0.5610 -5.1050 0.0006 13 6 2.7325 -6.0290 0.0022 14 7 2.0034 -7.2965 -0.1377 15 6 1.5504 -7.4963 -1.5316 16 6 2.6873 -8.3512 -2.1372 17 6 3.2727 -9.0449 -0.9232 18 6 4.0956 -10.1457 -0.8070 19 6 4.4766 -10.5977 0.4441 20 35 5.6103 -12.1027 0.6030 21 6 4.0258 -9.9463 1.5787 22 6 3.2014 -8.8465 1.4672 23 6 2.8152 -8.3838 0.2102 24 1 -0.4849 0.8401 -0.0004 25 1 0.6245 -2.5571 -0.8897 26 1 0.6238 -2.5567 0.8903 27 1 3.1564 -3.4357 0.0021 28 1 3.2884 -6.0312 0.9398 29 1 3.4259 -5.9148 -0.8310 30 1 0.6044 -8.0372 -1.5569 31 1 1.4654 -6.5419 -2.0511 32 1 2.2887 -9.0775 -2.8454 33 1 3.4338 -7.7173 -2.6156 34 1 4.4466 -10.6527 -1.6937 35 1 4.3211 -10.3004 2.5554 36 1 2.8533 -8.3422 2.3565 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049322990.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:32 Heat of formation + Delta-G solvation = 6.418157 kcal Electronic energy + Delta-G solvation = -20242.170942 eV Core-core repulsion = 16965.580669 eV Total energy + Delta-G solvation = -3276.590273 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 338.037 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.12848 -38.73562 -36.92211 -34.19018 -32.70306 -32.33695 -31.90689 -29.70028 -28.85769 -27.72882 -25.98661 -23.33518 -22.65654 -21.43754 -21.15368 -19.66825 -17.20003 -17.05130 -16.47497 -15.82210 -15.63016 -15.19945 -15.11228 -14.67073 -14.20891 -13.94161 -13.73119 -13.42538 -13.06939 -12.85214 -12.61903 -12.31092 -12.00214 -11.91686 -11.54300 -11.43357 -11.32682 -11.02419 -10.94585 -10.90115 -10.55120 -10.34627 -9.66541 -9.43116 -9.17472 -8.94303 -8.76621 -8.04968 -7.91875 -6.19656 -4.26816 0.77789 1.01543 1.35881 3.16686 3.21898 3.28298 3.30230 3.30766 3.41850 4.04704 4.27734 4.38770 4.52601 4.67071 4.81611 4.94421 4.98415 5.16280 5.18224 5.23031 5.33595 5.45779 5.50416 5.61899 5.64812 5.76246 5.91255 5.94164 6.12041 6.31461 6.67026 7.00358 7.27469 7.39173 7.48130 7.63314 7.93670 8.57811 8.74949 9.05840 9.39961 10.90488 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.030712 B = 0.002076 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.465186 B =13486.117009 C =13860.975893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.252 3.748 10 N -0.714 5.714 11 C 0.497 3.503 12 O -0.534 6.534 13 C 0.038 3.962 14 N -0.472 5.472 15 C 0.059 3.941 16 C -0.112 4.112 17 C -0.135 4.135 18 C -0.059 4.059 19 C -0.108 4.108 20 Br -0.055 7.055 21 C -0.073 4.073 22 C -0.108 4.108 23 C 0.116 3.884 24 H 0.266 0.734 25 H 0.026 0.974 26 H 0.027 0.973 27 H 0.390 0.610 28 H 0.102 0.898 29 H 0.069 0.931 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.130 0.870 35 H 0.136 0.864 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.667 -24.593 -0.987 27.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.582 4.582 8 H 0.081 0.919 9 C 0.131 3.869 10 N -0.364 5.364 11 C 0.280 3.720 12 O -0.411 6.411 13 C -0.090 4.090 14 N -0.188 5.188 15 C -0.068 4.068 16 C -0.150 4.150 17 C -0.139 4.139 18 C -0.080 4.080 19 C -0.188 4.188 20 Br 0.030 6.970 21 C -0.093 4.093 22 C -0.128 4.128 23 C 0.019 3.981 24 H 0.076 0.924 25 H 0.044 0.956 26 H 0.045 0.955 27 H 0.222 0.778 28 H 0.120 0.880 29 H 0.087 0.913 30 H 0.112 0.888 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.103 0.897 34 H 0.148 0.852 35 H 0.154 0.846 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 11.561 -25.045 -0.591 27.591 hybrid contribution 1.232 1.309 -0.481 1.861 sum 12.794 -23.736 -1.072 26.986 Atomic orbital electron populations 1.69975 1.06109 1.27340 1.48797 1.24955 0.94921 0.99470 0.94681 0.86412 0.79629 0.82636 0.78224 1.20461 1.20978 1.19743 1.21218 0.93252 0.90443 1.53325 0.91909 1.19097 0.88233 0.81818 0.97748 1.46459 1.11146 1.05990 1.72775 1.20200 0.89492 0.83994 0.78351 1.90683 1.16355 1.84572 1.49499 1.22176 0.95147 0.88105 1.03605 1.59603 1.34916 0.99816 1.24434 1.23183 0.97742 1.00725 0.85149 1.21780 0.98446 0.99037 0.95740 1.21041 0.98774 0.97970 0.96131 1.20255 0.96591 0.95025 0.96090 1.21537 1.03536 0.97736 0.95947 1.96694 1.63814 1.37877 1.98610 1.20867 0.96287 0.94496 0.97665 1.20551 0.99131 0.96986 0.96168 1.19775 0.91459 0.93153 0.93726 0.92415 0.95559 0.95504 0.77791 0.87963 0.91280 0.88782 0.89066 0.89147 0.89709 0.85227 0.84572 0.84594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.80 13.29 55.43 0.74 -25.06 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 7 C -0.54 -14.49 9.28 -34.44 -0.32 -14.81 16 8 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 9 C 0.25 6.53 5.43 -5.20 -0.03 6.50 16 10 N -0.71 -14.44 5.55 -61.47 -0.34 -14.78 16 11 C 0.50 9.48 7.29 -10.99 -0.08 9.40 16 12 O -0.53 -12.49 15.97 5.56 0.09 -12.41 16 13 C 0.04 0.53 5.23 -4.98 -0.03 0.51 16 14 N -0.47 -6.62 4.60 -170.36 -0.78 -7.41 16 15 C 0.06 0.73 6.36 -2.42 -0.02 0.71 16 16 C -0.11 -1.08 6.91 -26.61 -0.18 -1.26 16 17 C -0.14 -1.46 6.23 -104.04 -0.65 -2.11 16 18 C -0.06 -0.58 9.78 -39.64 -0.39 -0.97 16 19 C -0.11 -1.05 6.23 -39.48 -0.25 -1.30 16 20 Br -0.06 -0.48 33.71 -68.01 -2.29 -2.77 16 21 C -0.07 -0.69 9.77 -39.65 -0.39 -1.08 16 22 C -0.11 -1.16 10.05 -39.27 -0.39 -1.56 16 23 C 0.12 1.42 5.49 -83.39 -0.46 0.96 16 24 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 25 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.39 6.67 8.32 -40.82 -0.34 6.33 16 28 H 0.10 1.25 7.96 -51.93 -0.41 0.84 16 29 H 0.07 0.81 7.94 -51.93 -0.41 0.40 16 30 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.09 1.21 7.30 -51.93 -0.38 0.84 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 35 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 329.79 15.07 4.97 4.97 Total: -1.00 -31.69 329.79 -10.38 -42.07 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -4.46 Total: 3.19 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -3.27 Total: -3.36 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: -0.39 Total: -47.25 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.09 Total: -12.41 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 35 Polarization: -0.48 SS G_CDS: -2.29 Total: -2.77 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.69 -10.38 -42.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049322990.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.489 kcal (2) G-P(sol) polarization free energy of solvation -31.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds