Wall clock time and date at job start Tue Mar 31 2020 20:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00568 * 2 1 4 4 H 1.48497 * 109.47234 * 269.99749 * 3 2 1 5 5 H 1.48496 * 109.47012 * 30.00112 * 3 2 1 6 6 H 1.48498 * 109.47032 * 149.99718 * 3 2 1 7 7 C 1.37878 * 119.99548 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00532 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00037 * 0.02562 * 7 2 1 10 10 N 1.46495 * 109.47342 * 180.02562 * 9 7 2 11 11 C 1.34779 * 120.00311 * 180.02562 * 10 9 7 12 12 O 1.21278 * 119.99801 * 359.97438 * 11 10 9 13 13 C 1.50697 * 120.00425 * 179.97438 * 11 10 9 14 14 N 1.46896 * 109.47618 * 185.77710 * 13 11 10 15 15 C 1.47916 * 110.99570 * 75.77966 * 14 13 11 16 16 C 1.54602 * 102.62408 * 94.47803 * 15 14 13 17 17 C 1.51575 * 102.90742 * 25.29838 * 16 15 14 18 18 C 1.37929 * 131.54019 * 163.33844 * 17 16 15 19 19 C 1.38378 * 120.07386 * 181.05015 * 18 17 16 20 20 Br 1.89093 * 120.06840 * 180.23853 * 19 18 17 21 21 C 1.38376 * 119.86260 * 0.25668 * 19 18 17 22 22 C 1.37911 * 120.25537 * 359.83227 * 21 19 18 23 23 C 1.38960 * 107.96087 * 344.50335 * 17 16 15 24 24 H 0.97001 * 119.99455 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47219 * 59.99825 * 9 7 2 26 26 H 1.09006 * 109.47365 * 300.00195 * 9 7 2 27 27 H 0.97004 * 120.00347 * 359.97438 * 10 9 7 28 28 H 1.09003 * 109.46818 * 65.77883 * 13 11 10 29 29 H 1.09003 * 109.47346 * 305.78435 * 13 11 10 30 30 H 1.08996 * 110.77839 * 212.75779 * 15 14 13 31 31 H 1.08999 * 110.78063 * 336.19081 * 15 14 13 32 32 H 1.08999 * 110.73518 * 143.85190 * 16 15 14 33 33 H 1.08996 * 110.73306 * 266.99080 * 16 15 14 34 34 H 1.07999 * 119.95932 * 1.32369 * 18 17 16 35 35 H 1.08001 * 119.87519 * 179.84846 * 21 19 18 36 36 H 1.07998 * 119.89917 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4969 2.0463 -1.4000 5 1 1.4469 2.6526 0.7000 6 1 3.5468 1.4399 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1943 0.0010 9 6 1.2508 -2.4992 0.0005 10 7 2.2027 -3.6128 0.0018 11 6 1.7534 -4.8835 0.0015 12 8 0.5610 -5.1050 0.0006 13 6 2.7325 -6.0290 0.0022 14 7 2.0034 -7.2965 -0.1377 15 6 1.5504 -7.4963 -1.5316 16 6 2.6873 -8.3512 -2.1372 17 6 3.2727 -9.0449 -0.9232 18 6 4.0956 -10.1457 -0.8070 19 6 4.4766 -10.5977 0.4441 20 35 5.6103 -12.1027 0.6030 21 6 4.0258 -9.9463 1.5787 22 6 3.2014 -8.8465 1.4672 23 6 2.8152 -8.3838 0.2102 24 1 -0.4849 0.8401 -0.0004 25 1 0.6245 -2.5571 -0.8897 26 1 0.6238 -2.5567 0.8903 27 1 3.1564 -3.4357 0.0021 28 1 3.2884 -6.0312 0.9398 29 1 3.4259 -5.9148 -0.8310 30 1 0.6044 -8.0372 -1.5569 31 1 1.4654 -6.5419 -2.0511 32 1 2.2887 -9.0775 -2.8454 33 1 3.4338 -7.7173 -2.6156 34 1 4.4466 -10.6527 -1.6937 35 1 4.3211 -10.3004 2.5554 36 1 2.8533 -8.3422 2.3565 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049322990.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:31 Heat of formation + Delta-G solvation = -14.425167 kcal Electronic energy + Delta-G solvation = -20243.074776 eV Core-core repulsion = 16965.580669 eV Total energy + Delta-G solvation = -3277.494107 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 338.037 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.05154 -40.25064 -37.87071 -36.09508 -34.35743 -33.53362 -32.71200 -30.74427 -29.76569 -29.26308 -27.35076 -24.59415 -24.11883 -22.36990 -22.07493 -21.25553 -18.95524 -18.03161 -17.54802 -17.34517 -16.89576 -16.49487 -16.25231 -16.12179 -15.66894 -14.93428 -14.81796 -14.48158 -14.30787 -14.04573 -13.97204 -13.72308 -13.52267 -12.98151 -12.92916 -12.70894 -12.67289 -12.33897 -12.22753 -12.11073 -11.76327 -11.48487 -11.24779 -10.88393 -10.80112 -10.23423 -9.92575 -9.82067 -8.92966 -8.29066 -6.45533 -0.02684 0.25699 0.62775 1.43548 1.45681 1.56885 1.75086 2.14366 2.38607 2.52251 2.80458 3.05997 3.47991 3.68397 3.84989 3.90768 4.03483 4.10597 4.22414 4.25694 4.33608 4.46743 4.70034 4.75953 4.89580 4.94341 5.09132 5.11479 5.16374 5.24790 5.29628 5.48541 5.53582 5.66419 5.76047 5.85271 6.11621 6.65583 6.92156 7.23890 7.50075 8.83050 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.030712 B = 0.002076 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.465186 B =13486.117009 C =13860.975893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.984 3.016 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.255 1.255 7 C -0.555 4.555 8 H 0.084 0.916 9 C 0.269 3.731 10 N -0.708 5.708 11 C 0.496 3.504 12 O -0.582 6.582 13 C 0.055 3.945 14 N -0.497 5.497 15 C 0.054 3.946 16 C -0.100 4.100 17 C -0.136 4.136 18 C -0.060 4.060 19 C -0.111 4.111 20 Br -0.044 7.044 21 C -0.071 4.071 22 C -0.113 4.113 23 C 0.094 3.906 24 H 0.268 0.732 25 H -0.012 1.012 26 H -0.014 1.014 27 H 0.408 0.592 28 H 0.123 0.877 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.109 0.891 33 H 0.098 0.902 34 H 0.147 0.853 35 H 0.155 0.845 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.656 -25.396 -1.206 29.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.807 3.193 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.179 1.179 7 C -0.593 4.593 8 H 0.102 0.898 9 C 0.146 3.854 10 N -0.359 5.359 11 C 0.282 3.718 12 O -0.462 6.462 13 C -0.074 4.074 14 N -0.213 5.213 15 C -0.073 4.073 16 C -0.138 4.138 17 C -0.140 4.140 18 C -0.080 4.080 19 C -0.191 4.191 20 Br 0.042 6.958 21 C -0.091 4.091 22 C -0.134 4.134 23 C -0.003 4.003 24 H 0.077 0.923 25 H 0.006 0.994 26 H 0.004 0.996 27 H 0.244 0.756 28 H 0.141 0.859 29 H 0.115 0.885 30 H 0.104 0.896 31 H 0.094 0.906 32 H 0.127 0.873 33 H 0.116 0.884 34 H 0.165 0.835 35 H 0.172 0.828 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 14.607 -25.890 -0.812 29.737 hybrid contribution 0.273 1.426 -0.387 1.503 sum 14.880 -24.464 -1.198 28.659 Atomic orbital electron populations 1.70141 1.08271 1.28536 1.50016 1.26063 0.95763 1.03903 0.93916 0.85168 0.78505 0.77026 0.78599 1.19578 1.21081 1.17896 1.21621 0.94325 0.90554 1.52783 0.89756 1.18512 0.88627 0.84214 0.94052 1.46173 1.11232 1.05395 1.73141 1.21164 0.89824 0.84606 0.76179 1.90658 1.19002 1.85272 1.51269 1.22034 0.93529 0.85969 1.05820 1.59531 1.36061 1.00296 1.25448 1.23150 0.98733 1.00451 0.84924 1.21717 0.97491 0.98994 0.95578 1.21136 0.98785 0.98111 0.95958 1.20450 0.96105 0.94624 0.96825 1.21730 1.03348 0.97932 0.96091 1.96715 1.63358 1.37165 1.98596 1.21069 0.95603 0.93870 0.98594 1.20691 0.99343 0.97442 0.95926 1.19850 0.92512 0.93156 0.94776 0.92279 0.99393 0.99628 0.75602 0.85870 0.88451 0.89607 0.90615 0.87252 0.88404 0.83494 0.82759 0.84336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.87 13.29 21.45 0.28 -55.59 16 2 C 0.00 0.17 5.46 84.65 0.46 0.63 16 3 Si 0.98 41.82 29.54 68.60 2.03 43.85 16 4 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 5 H -0.29 -12.08 7.11 99.48 0.71 -11.37 16 6 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 7 C -0.56 -29.73 9.28 25.60 0.24 -29.49 16 8 H 0.08 4.05 7.60 -2.91 -0.02 4.03 16 9 C 0.27 14.55 5.43 85.63 0.46 15.02 16 10 N -0.71 -28.99 5.55 -466.79 -2.59 -31.58 16 11 C 0.50 19.28 7.29 87.66 0.64 19.91 16 12 O -0.58 -28.53 15.97 -3.02 -0.05 -28.58 16 13 C 0.05 1.46 5.23 85.56 0.45 1.91 16 14 N -0.50 -13.68 4.60 -692.91 -3.19 -16.87 16 15 C 0.05 1.33 6.36 86.65 0.55 1.88 16 16 C -0.10 -1.72 6.91 30.67 0.21 -1.51 16 17 C -0.14 -2.64 6.23 -19.49 -0.12 -2.77 16 18 C -0.06 -1.01 9.78 22.23 0.22 -0.80 16 19 C -0.11 -1.89 6.23 22.34 0.14 -1.75 16 20 Br -0.04 -0.65 33.71 -20.37 -0.69 -1.34 16 21 C -0.07 -1.20 9.77 22.22 0.22 -0.98 16 22 C -0.11 -2.27 10.05 22.47 0.23 -2.04 16 23 C 0.09 2.15 5.49 38.27 0.21 2.36 16 24 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 25 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 26 H -0.01 -0.88 8.14 -2.38 -0.02 -0.90 16 27 H 0.41 13.54 8.32 -92.71 -0.77 12.76 16 28 H 0.12 2.78 7.96 -2.39 -0.02 2.76 16 29 H 0.10 2.06 7.94 -2.39 -0.02 2.04 16 30 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.08 2.06 7.30 -2.39 -0.02 2.04 16 32 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 35 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 36 H 0.14 2.61 8.06 -2.91 -0.02 2.59 16 Total: -1.00 -71.13 329.79 0.04 -71.09 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: 0.33 Total: 16.64 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: 3.90 Total: 2.38 kcal Atomic # 7 Polarization: -98.55 SS G_CDS: -5.49 Total: -104.04 kcal Atomic # 8 Polarization: -28.53 SS G_CDS: -0.05 Total: -28.58 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Atomic # 35 Polarization: -0.65 SS G_CDS: -0.69 Total: -1.34 kcal Total: -71.13 0.04 -71.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049322990.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.668 kcal (2) G-P(sol) polarization free energy of solvation -71.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds