Wall clock time and date at job start Tue Mar 31 2020 20:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46501 * 120.00262 * 2 1 4 4 C 1.50694 * 109.46994 * 275.57044 * 3 2 1 5 5 H 1.08000 * 120.00340 * 4.71412 * 4 3 2 6 6 C 1.37881 * 119.99775 * 184.71123 * 4 3 2 7 7 N 1.31513 * 119.99944 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 120.00043 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47093 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47165 * 120.00133 * 8 6 4 11 11 H 1.48500 * 109.47126 * 240.00556 * 8 6 4 12 12 S 1.65607 * 119.99889 * 180.02562 * 2 1 3 13 13 O 1.42095 * 106.40068 * 159.57309 * 12 2 1 14 14 O 1.42099 * 106.40219 * 26.64923 * 12 2 1 15 15 N 1.65602 * 107.21326 * 273.11250 * 12 2 1 16 16 C 1.46502 * 120.00314 * 62.77692 * 15 12 2 17 17 C 1.52996 * 109.46930 * 164.43943 * 16 15 12 18 18 C 1.50710 * 109.46765 * 179.97438 * 17 16 15 19 19 C 1.33352 * 125.18540 * 90.00586 * 18 17 16 20 20 C 1.38466 * 114.92724 * 179.97438 * 19 18 17 21 21 C 1.33505 * 114.88652 * 359.97438 * 20 19 18 22 22 Cl 1.73596 * 125.21182 * 179.97438 * 21 20 19 23 23 S 1.75875 * 125.19098 * 270.00105 * 18 17 16 24 24 H 1.09003 * 109.47436 * 270.00162 * 1 2 3 25 25 H 1.08998 * 109.46864 * 29.99944 * 1 2 3 26 26 H 1.08998 * 109.47434 * 149.99541 * 1 2 3 27 27 H 1.09001 * 109.47003 * 35.57284 * 3 2 1 28 28 H 1.09002 * 109.46982 * 155.56978 * 3 2 1 29 29 H 0.97001 * 119.99827 * 179.97438 * 7 6 4 30 30 H 0.97001 * 119.99921 * 242.76554 * 15 12 2 31 31 H 1.08999 * 109.47101 * 44.43970 * 16 15 12 32 32 H 1.08997 * 109.47083 * 284.44250 * 16 15 12 33 33 H 1.08999 * 109.47207 * 60.00091 * 17 16 15 34 34 H 1.09005 * 109.47323 * 299.99734 * 17 16 15 35 35 H 1.07997 * 122.53718 * 0.02562 * 19 18 17 36 36 H 1.07999 * 122.56132 * 179.72864 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3292 1.7726 -1.4141 5 1 1.8446 1.2455 -2.2226 6 6 3.0684 2.9068 -1.6757 7 7 3.6589 3.5484 -0.6912 8 14 3.2312 3.5319 -3.4284 9 1 2.4775 2.6387 -4.3445 10 1 2.6808 4.9084 -3.5161 11 1 4.6641 3.5460 -3.8179 12 16 2.2930 -1.4342 -0.0006 13 8 3.5998 -1.1428 -0.4763 14 8 1.4384 -2.3906 -0.6125 15 7 2.4636 -1.9023 1.5787 16 6 1.2782 -2.1972 2.3875 17 6 1.6963 -2.9620 3.6449 18 6 0.4769 -3.2648 4.4772 19 6 -0.2731 -4.3623 4.3707 20 6 -1.3461 -4.4230 5.2437 21 6 -1.4663 -3.3733 6.0599 22 17 -2.7092 -3.1718 7.2549 23 16 -0.1740 -2.2248 5.7373 24 1 -0.3634 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3634 -0.8899 -0.5139 27 1 1.6553 2.0013 0.5978 28 1 3.1895 1.1155 0.4250 29 1 4.1792 4.3461 -0.8753 30 1 3.3484 -1.9814 1.9682 31 1 0.5840 -2.8045 1.8068 32 1 0.7928 -1.2643 2.6742 33 1 2.3905 -2.3547 4.2256 34 1 2.1817 -3.8950 3.3581 35 1 -0.0592 -5.1451 3.6580 36 1 -2.0357 -5.2540 5.2603 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049335347.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:28 Heat of formation + Delta-G solvation = -52.800938 kcal Electronic energy + Delta-G solvation = -22224.365846 eV Core-core repulsion = 18601.999055 eV Total energy + Delta-G solvation = -3622.366792 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 338.031 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -38.58208 -37.09532 -36.64097 -35.79645 -35.47157 -35.17653 -32.44237 -31.78864 -27.78550 -27.57250 -25.08840 -24.35649 -22.59278 -22.27253 -19.81438 -19.07541 -17.79283 -17.15326 -16.71820 -16.46538 -16.19191 -15.86547 -15.05286 -14.93146 -14.31992 -14.02024 -13.85325 -13.52167 -13.31204 -13.27495 -12.89613 -12.64125 -12.34854 -12.17709 -11.91635 -11.71186 -11.61041 -11.45787 -11.39796 -11.16946 -11.13847 -11.08099 -11.00406 -10.70162 -10.51855 -10.04667 -9.75810 -9.41153 -8.90393 -8.84208 -8.45403 -8.07851 -6.07256 -4.11277 0.44023 0.76525 1.21167 1.48163 1.90089 2.26211 3.30665 3.38354 3.42651 3.47707 4.08908 4.42796 4.44989 4.71416 4.74345 4.92536 5.02955 5.12355 5.28115 5.31468 5.49478 5.54232 5.64146 5.67935 5.78636 5.94710 5.98332 6.03860 6.28711 6.54811 7.04510 7.24971 7.39852 7.61222 7.90456 8.19758 8.91611 9.54222 11.01449 Molecular weight = 338.03amu Principal moments of inertia in cm(-1) A = 0.021073 B = 0.002542 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.408738 B =11011.241760 C =11600.619958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.995 5.995 3 C 0.256 3.744 4 C -0.530 4.530 5 H 0.061 0.939 6 C 0.062 3.938 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.282 1.282 12 S 2.782 3.218 13 O -0.962 6.962 14 O -0.997 6.997 15 N -1.136 6.136 16 C 0.125 3.875 17 C -0.058 4.058 18 C -0.165 4.165 19 C -0.131 4.131 20 C -0.115 4.115 21 C -0.156 4.156 22 Cl -0.018 7.018 23 S 0.159 5.841 24 H 0.038 0.962 25 H 0.078 0.922 26 H 0.065 0.935 27 H 0.032 0.968 28 H 0.043 0.957 29 H 0.263 0.737 30 H 0.413 0.587 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.151 0.849 36 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.297 -14.775 16.147 23.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.838 5.838 3 C 0.134 3.866 4 C -0.570 4.570 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.208 1.208 12 S 2.790 3.210 13 O -0.946 6.946 14 O -0.981 6.981 15 N -0.895 5.895 16 C -0.003 4.003 17 C -0.098 4.098 18 C -0.284 4.284 19 C -0.161 4.161 20 C -0.147 4.147 21 C -0.299 4.299 22 Cl 0.011 6.989 23 S 0.422 5.578 24 H 0.057 0.943 25 H 0.097 0.903 26 H 0.084 0.916 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.246 0.754 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.104 0.896 34 H 0.114 0.886 35 H 0.168 0.832 36 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -8.789 -13.637 16.066 22.833 hybrid contribution -0.244 -0.671 -0.766 1.047 sum -9.034 -14.308 15.299 22.812 Atomic orbital electron populations 1.21385 0.80264 1.03584 1.00132 1.57585 1.14244 1.23295 1.88665 1.19078 0.91211 0.78625 0.97674 1.21534 1.31707 1.10271 0.93447 0.92088 1.24941 0.95032 0.96545 0.97510 1.69926 1.33227 1.18957 1.31271 0.86456 0.78055 0.78473 0.84546 1.19641 1.20957 1.20781 1.01939 0.73390 0.72932 0.72762 1.93647 1.38661 1.84553 1.77757 1.93524 1.69004 1.61202 1.74352 1.56292 1.13747 1.85945 1.33475 1.21197 0.87645 0.99613 0.91796 1.20396 0.92899 1.02375 0.94160 1.24503 1.02860 0.98663 1.02329 1.20026 0.95292 0.99286 1.01458 1.20194 0.99895 0.98810 0.95844 1.25277 1.00254 1.02093 1.02302 1.98370 1.49865 1.96943 1.53752 1.84603 1.19886 1.20826 1.32481 0.94347 0.90332 0.91592 0.94987 0.93940 0.92726 0.75442 0.90143 0.91553 0.89567 0.88610 0.83184 0.83391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.55 10.69 59.84 0.64 2.18 16 2 N -0.99 -20.09 3.23 -123.06 -0.40 -20.49 16 3 C 0.26 6.33 5.10 -5.20 -0.03 6.30 16 4 C -0.53 -14.80 9.38 -34.44 -0.32 -15.12 16 5 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 7 N -0.89 -26.04 13.29 55.43 0.74 -25.30 16 8 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 9 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 12 S 2.78 53.15 6.09 -107.50 -0.65 52.50 16 13 O -0.96 -22.49 16.99 -57.17 -0.97 -23.46 16 14 O -1.00 -20.17 16.34 -57.17 -0.93 -21.10 16 15 N -1.14 -15.35 6.05 -10.61 -0.06 -15.41 16 16 C 0.13 1.38 6.24 -4.04 -0.03 1.36 16 17 C -0.06 -0.48 5.85 -27.88 -0.16 -0.65 16 18 C -0.16 -1.42 5.76 -36.01 -0.21 -1.63 16 19 C -0.13 -1.05 10.05 -41.20 -0.41 -1.46 16 20 C -0.12 -0.93 10.13 -41.15 -0.42 -1.34 16 21 C -0.16 -1.39 7.10 29.08 0.21 -1.18 16 22 Cl -0.02 -0.15 29.29 -51.86 -1.52 -1.67 16 23 S 0.16 1.41 23.33 -107.50 -2.51 -1.09 16 24 H 0.04 0.52 8.05 -51.93 -0.42 0.10 16 25 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 26 H 0.07 1.04 7.05 -51.93 -0.37 0.67 16 27 H 0.03 0.80 8.11 -51.93 -0.42 0.38 16 28 H 0.04 1.12 7.50 -51.93 -0.39 0.73 16 29 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 30 H 0.41 4.73 8.66 -34.47 -0.30 4.43 16 31 H 0.08 0.90 7.79 -51.93 -0.40 0.50 16 32 H 0.07 0.72 8.05 -51.93 -0.42 0.30 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 36 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 353.02 15.07 5.32 5.32 Total: -1.00 -33.73 353.02 -11.21 -44.94 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -4.37 Total: -1.11 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: -0.83 Total: -9.88 kcal Atomic # 7 Polarization: -61.48 SS G_CDS: 0.28 Total: -61.20 kcal Atomic # 8 Polarization: -42.66 SS G_CDS: -1.91 Total: -44.56 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: 54.57 SS G_CDS: -3.16 Total: 51.40 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -1.52 Total: -1.67 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.73 -11.21 -44.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049335347.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.863 kcal (2) G-P(sol) polarization free energy of solvation -33.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds