Wall clock time and date at job start Tue Mar 31 2020 20:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46501 * 120.00262 * 2 1 4 4 C 1.50694 * 109.46994 * 275.57044 * 3 2 1 5 5 H 1.08000 * 120.00340 * 4.71412 * 4 3 2 6 6 C 1.37881 * 119.99775 * 184.71123 * 4 3 2 7 7 N 1.31513 * 119.99944 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 120.00043 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47093 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47165 * 120.00133 * 8 6 4 11 11 H 1.48500 * 109.47126 * 240.00556 * 8 6 4 12 12 S 1.65607 * 119.99889 * 180.02562 * 2 1 3 13 13 O 1.42095 * 106.40068 * 159.57309 * 12 2 1 14 14 O 1.42099 * 106.40219 * 26.64923 * 12 2 1 15 15 N 1.65602 * 107.21326 * 273.11250 * 12 2 1 16 16 C 1.46502 * 120.00314 * 62.77692 * 15 12 2 17 17 C 1.52996 * 109.46930 * 164.43943 * 16 15 12 18 18 C 1.50710 * 109.46765 * 179.97438 * 17 16 15 19 19 C 1.33352 * 125.18540 * 90.00586 * 18 17 16 20 20 C 1.38466 * 114.92724 * 179.97438 * 19 18 17 21 21 C 1.33505 * 114.88652 * 359.97438 * 20 19 18 22 22 Cl 1.73596 * 125.21182 * 179.97438 * 21 20 19 23 23 S 1.75875 * 125.19098 * 270.00105 * 18 17 16 24 24 H 1.09003 * 109.47436 * 270.00162 * 1 2 3 25 25 H 1.08998 * 109.46864 * 29.99944 * 1 2 3 26 26 H 1.08998 * 109.47434 * 149.99541 * 1 2 3 27 27 H 1.09001 * 109.47003 * 35.57284 * 3 2 1 28 28 H 1.09002 * 109.46982 * 155.56978 * 3 2 1 29 29 H 0.97001 * 119.99827 * 179.97438 * 7 6 4 30 30 H 0.97001 * 119.99921 * 242.76554 * 15 12 2 31 31 H 1.08999 * 109.47101 * 44.43970 * 16 15 12 32 32 H 1.08997 * 109.47083 * 284.44250 * 16 15 12 33 33 H 1.08999 * 109.47207 * 60.00091 * 17 16 15 34 34 H 1.09005 * 109.47323 * 299.99734 * 17 16 15 35 35 H 1.07997 * 122.53718 * 0.02562 * 19 18 17 36 36 H 1.07999 * 122.56132 * 179.72864 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3292 1.7726 -1.4141 5 1 1.8446 1.2455 -2.2226 6 6 3.0684 2.9068 -1.6757 7 7 3.6589 3.5484 -0.6912 8 14 3.2312 3.5319 -3.4284 9 1 2.4775 2.6387 -4.3445 10 1 2.6808 4.9084 -3.5161 11 1 4.6641 3.5460 -3.8179 12 16 2.2930 -1.4342 -0.0006 13 8 3.5998 -1.1428 -0.4763 14 8 1.4384 -2.3906 -0.6125 15 7 2.4636 -1.9023 1.5787 16 6 1.2782 -2.1972 2.3875 17 6 1.6963 -2.9620 3.6449 18 6 0.4769 -3.2648 4.4772 19 6 -0.2731 -4.3623 4.3707 20 6 -1.3461 -4.4230 5.2437 21 6 -1.4663 -3.3733 6.0599 22 17 -2.7092 -3.1718 7.2549 23 16 -0.1740 -2.2248 5.7373 24 1 -0.3634 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3634 -0.8899 -0.5139 27 1 1.6553 2.0013 0.5978 28 1 3.1895 1.1155 0.4250 29 1 4.1792 4.3461 -0.8753 30 1 3.3484 -1.9814 1.9682 31 1 0.5840 -2.8045 1.8068 32 1 0.7928 -1.2643 2.6742 33 1 2.3905 -2.3547 4.2256 34 1 2.1817 -3.8950 3.3581 35 1 -0.0592 -5.1451 3.6580 36 1 -2.0357 -5.2540 5.2603 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049335347.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:28 Heat of formation + Delta-G solvation = -76.208577 kcal Electronic energy + Delta-G solvation = -22225.380878 eV Core-core repulsion = 18601.999055 eV Total energy + Delta-G solvation = -3623.381823 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 338.031 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.22744 -38.27764 -37.74643 -37.21308 -36.82877 -36.69719 -34.49472 -32.62692 -29.65123 -28.33068 -26.77369 -25.10456 -24.20050 -23.30816 -20.56695 -20.31219 -19.03882 -18.51612 -18.34532 -17.98973 -17.40711 -16.76917 -16.65498 -15.99780 -15.78253 -15.07842 -14.92661 -14.69689 -14.58985 -14.09731 -14.01103 -13.90035 -13.68457 -13.45196 -13.27692 -13.13189 -13.00571 -12.92450 -12.89317 -12.51840 -12.44972 -12.36328 -12.21292 -12.00023 -11.87729 -11.71713 -11.64676 -10.60892 -10.49950 -9.78086 -9.55464 -9.49415 -8.20098 -6.31760 -0.34101 -0.15989 0.12846 0.84718 1.25536 1.38929 1.41450 1.52830 1.64507 2.06185 2.40860 2.66511 3.11259 3.47416 3.75218 3.94569 4.03662 4.14176 4.32867 4.45894 4.51899 4.67740 4.74112 4.82330 4.86730 5.01198 5.07389 5.12138 5.17838 5.22144 5.40985 5.46652 5.71416 5.88180 6.10324 6.18098 6.77303 7.37342 8.87696 Molecular weight = 338.03amu Principal moments of inertia in cm(-1) A = 0.021073 B = 0.002542 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.408738 B =11011.241760 C =11600.619958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -1.003 6.003 3 C 0.271 3.729 4 C -0.550 4.550 5 H 0.053 0.947 6 C 0.011 3.989 7 N -0.924 5.924 8 Si 0.956 3.044 9 H -0.269 1.269 10 H -0.270 1.270 11 H -0.280 1.280 12 S 2.800 3.200 13 O -1.011 7.011 14 O -1.009 7.009 15 N -1.119 6.119 16 C 0.117 3.883 17 C -0.051 4.051 18 C -0.170 4.170 19 C -0.129 4.129 20 C -0.114 4.114 21 C -0.168 4.168 22 Cl -0.019 7.019 23 S 0.140 5.860 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.027 0.973 28 H 0.021 0.979 29 H 0.267 0.733 30 H 0.424 0.576 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.095 0.905 34 H 0.112 0.888 35 H 0.169 0.831 36 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.046 -15.795 16.391 24.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.845 5.845 3 C 0.147 3.853 4 C -0.589 4.589 5 H 0.071 0.929 6 C -0.188 4.188 7 N -0.564 5.564 8 Si 0.781 3.219 9 H -0.194 1.194 10 H -0.195 1.195 11 H -0.206 1.206 12 S 2.807 3.193 13 O -0.995 6.995 14 O -0.992 6.992 15 N -0.882 5.882 16 C -0.010 4.010 17 C -0.092 4.092 18 C -0.288 4.288 19 C -0.159 4.159 20 C -0.147 4.147 21 C -0.311 4.311 22 Cl 0.010 6.990 23 S 0.403 5.597 24 H 0.091 0.909 25 H 0.088 0.912 26 H 0.094 0.906 27 H 0.045 0.955 28 H 0.039 0.961 29 H 0.076 0.924 30 H 0.260 0.740 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.113 0.887 34 H 0.130 0.870 35 H 0.186 0.814 36 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -9.559 -14.663 16.313 23.927 hybrid contribution -0.080 -0.448 -0.756 0.883 sum -9.639 -15.111 15.557 23.734 Atomic orbital electron populations 1.21610 0.78205 1.03657 1.02454 1.57465 1.15667 1.21971 1.89368 1.18623 0.90600 0.80235 0.95832 1.21887 1.31710 1.10543 0.94769 0.92885 1.25753 0.94811 0.96863 1.01410 1.70011 1.33816 1.19449 1.33089 0.85538 0.78014 0.78426 0.79922 1.19354 1.19530 1.20561 1.01158 0.71999 0.72446 0.73653 1.93578 1.41061 1.85159 1.79658 1.93505 1.69057 1.61129 1.75503 1.55757 1.15449 1.85093 1.31922 1.21457 0.86551 1.00391 0.92583 1.20349 0.93076 1.02938 0.92814 1.24523 1.03111 0.98818 1.02379 1.20290 0.94764 0.99429 1.01394 1.20458 1.00050 0.98922 0.95230 1.25411 1.00424 1.02474 1.02819 1.98368 1.49841 1.96975 1.53832 1.84654 1.20405 1.21452 1.33170 0.90896 0.91181 0.90606 0.95481 0.96121 0.92390 0.73984 0.89900 0.91227 0.88672 0.86957 0.81360 0.81723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.75 10.69 127.77 1.37 4.12 16 2 N -1.00 -40.12 3.23 -543.24 -1.75 -41.88 16 3 C 0.27 13.55 5.10 85.63 0.44 13.98 16 4 C -0.55 -31.00 9.38 25.60 0.24 -30.76 16 5 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 6 C 0.01 0.63 5.46 84.66 0.46 1.09 16 7 N -0.92 -54.15 13.29 21.45 0.28 -53.87 16 8 Si 0.96 44.61 29.54 68.60 2.03 46.64 16 9 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 10 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 12 S 2.80 105.48 6.09 -56.49 -0.34 105.14 16 13 O -1.01 -47.82 16.99 -128.00 -2.17 -49.99 16 14 O -1.01 -39.63 16.34 -128.00 -2.09 -41.72 16 15 N -1.12 -28.54 6.05 -187.50 -1.13 -29.67 16 16 C 0.12 2.31 6.24 86.38 0.54 2.85 16 17 C -0.05 -0.72 5.85 29.85 0.17 -0.55 16 18 C -0.17 -2.53 5.76 24.58 0.14 -2.39 16 19 C -0.13 -1.72 10.05 21.22 0.21 -1.51 16 20 C -0.11 -1.59 10.13 21.25 0.22 -1.37 16 21 C -0.17 -2.74 7.10 66.75 0.47 -2.27 16 22 Cl -0.02 -0.30 29.29 -2.72 -0.08 -0.38 16 23 S 0.14 2.31 23.33 -56.49 -1.32 0.99 16 24 H 0.07 1.81 8.05 -2.39 -0.02 1.79 16 25 H 0.07 2.34 8.07 -2.39 -0.02 2.32 16 26 H 0.08 2.26 7.05 -2.39 -0.02 2.25 16 27 H 0.03 1.37 8.11 -2.39 -0.02 1.35 16 28 H 0.02 1.12 7.50 -2.39 -0.02 1.10 16 29 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 30 H 0.42 9.08 8.66 -96.74 -0.84 8.24 16 31 H 0.08 1.64 7.79 -2.39 -0.02 1.62 16 32 H 0.07 1.36 8.05 -2.39 -0.02 1.34 16 33 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.11 1.24 8.14 -2.38 -0.02 1.23 16 35 H 0.17 1.59 8.06 -2.91 -0.02 1.57 16 36 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 Total: -1.00 -72.03 353.02 -2.05 -74.07 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: 0.27 Total: 7.48 kcal Atomic # 6 Polarization: -21.07 SS G_CDS: 4.26 Total: -16.80 kcal Atomic # 7 Polarization: -122.82 SS G_CDS: -2.60 Total: -125.42 kcal Atomic # 8 Polarization: -87.45 SS G_CDS: -4.27 Total: -91.72 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Atomic # 16 Polarization: 107.79 SS G_CDS: -1.66 Total: 106.13 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -0.08 Total: -0.38 kcal Total: -72.03 -2.05 -74.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049335347.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.136 kcal (2) G-P(sol) polarization free energy of solvation -72.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds