Wall clock time and date at job start Tue Mar 31 2020 20:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35626 * 125.67111 * 2 1 4 4 C 1.35505 * 108.85198 * 179.86862 * 3 2 1 5 5 Br 1.89101 * 126.07193 * 180.13526 * 4 3 2 6 6 C 1.39888 * 107.85331 * 0.39221 * 4 3 2 7 7 C 1.37634 * 125.67904 * 180.31382 * 2 1 3 8 8 C 1.46661 * 126.22592 * 359.93878 * 7 2 1 9 9 O 1.21720 * 119.99934 * 5.04561 * 8 7 2 10 10 N 1.34771 * 119.99749 * 185.04945 * 8 7 2 11 11 C 1.40532 * 119.99767 * 185.19774 * 10 8 7 12 12 C 1.40665 * 126.08402 * 0.02562 * 11 10 8 13 13 N 1.30905 * 108.38921 * 179.97438 * 12 11 10 14 14 N 1.40070 * 108.41018 * 0.02562 * 13 12 11 15 15 C 1.37319 * 126.06249 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99526 * 174.94947 * 15 14 13 17 17 C 1.38985 * 120.00386 * 354.95291 * 15 14 13 18 18 N 1.31295 * 120.00125 * 5.02241 * 17 15 14 19 19 Si 1.86798 * 119.99690 * 185.02364 * 17 15 14 20 20 H 1.48506 * 109.47116 * 95.00159 * 19 17 15 21 21 H 1.48504 * 109.46935 * 214.99851 * 19 17 15 22 22 H 1.48499 * 109.47598 * 334.99985 * 19 17 15 23 23 C 1.35694 * 126.08682 * 179.71138 * 11 10 8 24 24 H 1.08996 * 109.46971 * 264.56008 * 1 2 3 25 25 H 1.09007 * 109.46951 * 144.56091 * 1 2 3 26 26 H 1.08997 * 109.47556 * 24.56384 * 1 2 3 27 27 H 1.07995 * 125.57497 * 359.97438 * 3 2 1 28 28 H 1.07995 * 126.45103 * 179.73497 * 6 4 3 29 29 H 0.97002 * 120.00753 * 5.19415 * 10 8 7 30 30 H 1.08006 * 125.80760 * 0.03899 * 12 11 10 31 31 H 0.97001 * 119.99864 * 180.02562 * 18 17 15 32 32 H 1.08000 * 126.24854 * 359.97438 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2559 1.1018 0.0000 4 6 3.5530 0.7097 0.0029 5 35 5.0610 1.8506 0.0078 6 6 3.5782 -0.6889 -0.0043 7 6 2.2678 -1.1180 -0.0061 8 6 1.8122 -2.5120 -0.0125 9 8 0.6250 -2.7639 -0.1054 10 7 2.7082 -3.5141 0.0846 11 6 2.2846 -4.8491 -0.0311 12 6 0.9644 -5.2834 -0.2485 13 7 0.9632 -6.5915 -0.2995 14 7 2.2767 -7.0425 -0.1170 15 6 2.6872 -8.3529 -0.1060 16 1 3.7390 -8.5886 -0.0383 17 6 1.7493 -9.3757 -0.1820 18 7 0.4805 -9.0908 -0.3635 19 14 2.2938 -11.1557 -0.0258 20 1 2.1395 -11.5988 1.3831 21 1 1.4568 -12.0086 -0.9075 22 1 3.7181 -11.2749 -0.4290 23 6 3.0770 -5.9482 0.0409 24 1 -0.3633 -0.0974 1.0230 25 1 -0.3633 -0.8373 -0.5959 26 1 -0.3634 0.9346 -0.4272 27 1 1.9087 2.1244 -0.0004 28 1 4.4584 -1.3147 -0.0082 29 1 3.6455 -3.3140 0.2343 30 1 0.0991 -4.6461 -0.3560 31 1 -0.1741 -9.8047 -0.4162 32 1 4.1457 -5.9558 0.1969 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049993974.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:41 Heat of formation + Delta-G solvation = 104.533074 kcal Electronic energy + Delta-G solvation = -20059.701870 eV Core-core repulsion = 16683.825836 eV Total energy + Delta-G solvation = -3375.876034 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.012 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -41.53501 -39.78171 -38.25197 -34.46548 -33.46114 -33.02734 -30.99425 -30.28474 -29.27065 -27.53123 -26.35034 -24.95828 -22.80559 -20.97142 -20.63026 -19.50643 -19.33018 -17.82544 -17.29644 -15.75700 -15.71809 -15.43174 -15.23366 -14.37818 -14.24096 -13.75509 -13.60385 -13.31223 -13.16990 -12.92325 -12.89101 -12.71547 -12.16383 -11.71048 -11.45841 -11.29642 -10.97051 -10.94373 -10.53971 -10.34610 -10.23146 -9.37685 -9.20496 -8.84747 -8.78862 -8.38443 -8.08749 -6.73180 -6.58598 -4.25259 1.41665 1.61351 2.27047 2.65568 2.93689 3.04402 3.09612 3.32694 3.62802 3.74629 3.87530 4.41534 4.63711 4.68750 4.73656 4.99365 5.03275 5.13035 5.17272 5.43546 5.58630 5.79219 6.20985 6.29759 6.44605 6.63838 6.86025 6.91920 6.92386 7.07848 7.20040 7.83008 8.10878 8.22814 8.57076 8.76720 9.34637 9.63246 10.37587 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.027319 B = 0.002397 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.687296 B =11678.651556 C =12679.329092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.402 5.402 3 C 0.045 3.955 4 C -0.176 4.176 5 Br -0.036 7.036 6 C -0.124 4.124 7 C -0.018 4.018 8 C 0.570 3.430 9 O -0.542 6.542 10 N -0.606 5.606 11 C -0.060 4.060 12 C -0.030 4.030 13 N -0.261 5.261 14 N -0.141 5.141 15 C -0.323 4.323 16 H 0.117 0.883 17 C 0.046 3.954 18 N -0.769 5.769 19 Si 0.935 3.065 20 H -0.271 1.271 21 H -0.276 1.276 22 H -0.263 1.263 23 C -0.080 4.080 24 H 0.080 0.920 25 H 0.108 0.892 26 H 0.084 0.916 27 H 0.176 0.824 28 H 0.152 0.848 29 H 0.400 0.600 30 H 0.176 0.824 31 H 0.275 0.725 32 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.594 20.562 1.134 21.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.074 5.074 3 C -0.094 4.094 4 C -0.261 4.261 5 Br 0.048 6.952 6 C -0.151 4.151 7 C -0.133 4.133 8 C 0.357 3.643 9 O -0.422 6.422 10 N -0.247 5.247 11 C -0.166 4.166 12 C -0.206 4.206 13 N -0.092 5.092 14 N 0.091 4.909 15 C -0.455 4.455 16 H 0.135 0.865 17 C -0.171 4.171 18 N -0.396 5.396 19 Si 0.759 3.241 20 H -0.196 1.196 21 H -0.201 1.201 22 H -0.187 1.187 23 C -0.231 4.231 24 H 0.099 0.901 25 H 0.127 0.873 26 H 0.102 0.898 27 H 0.193 0.807 28 H 0.170 0.830 29 H 0.234 0.766 30 H 0.193 0.807 31 H 0.086 0.914 32 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 4.944 19.576 0.875 20.209 hybrid contribution 1.008 -0.009 0.278 1.045 sum 5.952 19.567 1.153 20.484 Atomic orbital electron populations 1.22367 0.75131 1.05201 1.04773 1.43904 1.07244 1.04610 1.51673 1.21788 0.88911 0.92028 1.06694 1.20871 0.91595 0.94155 1.19517 1.96585 1.37053 1.63200 1.98361 1.21217 0.95330 0.93057 1.05456 1.20227 0.89562 0.88233 1.15324 1.16650 0.85826 0.82626 0.79210 1.90688 1.16041 1.83892 1.51564 1.42089 1.10084 1.03766 1.68736 1.17205 0.94372 0.81532 1.23450 1.24095 0.96014 0.93043 1.07441 1.78256 0.97179 1.08696 1.25059 1.44559 1.04046 1.04205 1.38060 1.19902 0.94654 0.77824 1.53131 0.86515 1.25649 0.94872 1.01179 0.95384 1.70221 1.01013 1.33817 1.34510 0.85804 0.79250 0.80258 0.78804 1.19627 1.20092 1.18737 1.21265 0.96375 0.86420 1.19063 0.90135 0.87306 0.89759 0.80686 0.82991 0.76600 0.80748 0.91448 0.83512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.65 10.50 59.85 0.63 1.28 16 2 N -0.40 -4.87 3.16 -120.20 -0.38 -5.25 16 3 C 0.04 0.46 11.34 -16.85 -0.19 0.27 16 4 C -0.18 -2.01 6.53 -39.94 -0.26 -2.27 16 5 Br -0.04 -0.36 34.08 -68.01 -2.32 -2.68 16 6 C -0.12 -1.54 10.33 -39.09 -0.40 -1.94 16 7 C -0.02 -0.26 6.88 -81.99 -0.56 -0.83 16 8 C 0.57 10.14 7.74 -12.86 -0.10 10.04 16 9 O -0.54 -11.10 11.93 5.17 0.06 -11.04 16 10 N -0.61 -10.85 5.44 -11.18 -0.06 -10.91 16 11 C -0.06 -1.37 6.90 -83.86 -0.58 -1.95 16 12 C -0.03 -0.79 10.85 -17.03 -0.18 -0.97 16 13 N -0.26 -7.51 10.41 30.80 0.32 -7.19 16 14 N -0.14 -3.84 3.74 -11.41 -0.04 -3.89 16 15 C -0.32 -8.46 10.24 -14.82 -0.15 -8.61 16 16 H 0.12 2.73 7.84 -52.48 -0.41 2.32 16 17 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 18 N -0.77 -21.31 11.83 55.49 0.66 -20.66 16 19 Si 0.94 18.76 29.55 -169.99 -5.02 13.74 16 20 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 21 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 22 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 23 C -0.08 -1.86 11.49 -16.39 -0.19 -2.05 16 24 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.11 1.32 6.52 -51.93 -0.34 0.99 16 26 H 0.08 0.55 8.12 -51.93 -0.42 0.12 16 27 H 0.18 1.23 8.06 -52.49 -0.42 0.81 16 28 H 0.15 1.61 7.49 -52.49 -0.39 1.22 16 29 H 0.40 5.67 7.77 -40.82 -0.32 5.35 16 30 H 0.18 4.44 5.93 -52.48 -0.31 4.13 16 31 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 32 H 0.15 2.83 8.06 -52.49 -0.42 2.41 16 LS Contribution 305.99 15.07 4.61 4.61 Total: -1.00 -32.75 305.99 -6.86 -39.61 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -2.60 Total: 9.59 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: -2.09 Total: -5.94 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: 0.49 Total: -47.90 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.06 Total: -11.04 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.02 Total: 13.74 kcal Atomic # 35 Polarization: -0.36 SS G_CDS: -2.32 Total: -2.68 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.75 -6.86 -39.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049993974.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.147 kcal (2) G-P(sol) polarization free energy of solvation -32.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds