Wall clock time and date at job start Tue Mar 31 2020 20:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35626 * 125.67111 * 2 1 4 4 C 1.35505 * 108.85198 * 179.86862 * 3 2 1 5 5 Br 1.89101 * 126.07193 * 180.13526 * 4 3 2 6 6 C 1.39888 * 107.85331 * 0.39221 * 4 3 2 7 7 C 1.37634 * 125.67904 * 180.31382 * 2 1 3 8 8 C 1.46661 * 126.22592 * 359.93878 * 7 2 1 9 9 O 1.21720 * 119.99934 * 5.04561 * 8 7 2 10 10 N 1.34771 * 119.99749 * 185.04945 * 8 7 2 11 11 C 1.40532 * 119.99767 * 185.19774 * 10 8 7 12 12 C 1.40665 * 126.08402 * 0.02562 * 11 10 8 13 13 N 1.30905 * 108.38921 * 179.97438 * 12 11 10 14 14 N 1.40070 * 108.41018 * 0.02562 * 13 12 11 15 15 C 1.37319 * 126.06249 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99526 * 174.94947 * 15 14 13 17 17 C 1.38985 * 120.00386 * 354.95291 * 15 14 13 18 18 N 1.31295 * 120.00125 * 5.02241 * 17 15 14 19 19 Si 1.86798 * 119.99690 * 185.02364 * 17 15 14 20 20 H 1.48506 * 109.47116 * 95.00159 * 19 17 15 21 21 H 1.48504 * 109.46935 * 214.99851 * 19 17 15 22 22 H 1.48499 * 109.47598 * 334.99985 * 19 17 15 23 23 C 1.35694 * 126.08682 * 179.71138 * 11 10 8 24 24 H 1.08996 * 109.46971 * 264.56008 * 1 2 3 25 25 H 1.09007 * 109.46951 * 144.56091 * 1 2 3 26 26 H 1.08997 * 109.47556 * 24.56384 * 1 2 3 27 27 H 1.07995 * 125.57497 * 359.97438 * 3 2 1 28 28 H 1.07995 * 126.45103 * 179.73497 * 6 4 3 29 29 H 0.97002 * 120.00753 * 5.19415 * 10 8 7 30 30 H 1.08006 * 125.80760 * 0.03899 * 12 11 10 31 31 H 0.97001 * 119.99864 * 180.02562 * 18 17 15 32 32 H 1.08000 * 126.24854 * 359.97438 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2559 1.1018 0.0000 4 6 3.5530 0.7097 0.0029 5 35 5.0610 1.8506 0.0078 6 6 3.5782 -0.6889 -0.0043 7 6 2.2678 -1.1180 -0.0061 8 6 1.8122 -2.5120 -0.0125 9 8 0.6250 -2.7639 -0.1054 10 7 2.7082 -3.5141 0.0846 11 6 2.2846 -4.8491 -0.0311 12 6 0.9644 -5.2834 -0.2485 13 7 0.9632 -6.5915 -0.2995 14 7 2.2767 -7.0425 -0.1170 15 6 2.6872 -8.3529 -0.1060 16 1 3.7390 -8.5886 -0.0383 17 6 1.7493 -9.3757 -0.1820 18 7 0.4805 -9.0908 -0.3635 19 14 2.2938 -11.1557 -0.0258 20 1 2.1395 -11.5988 1.3831 21 1 1.4568 -12.0086 -0.9075 22 1 3.7181 -11.2749 -0.4290 23 6 3.0770 -5.9482 0.0409 24 1 -0.3633 -0.0974 1.0230 25 1 -0.3633 -0.8373 -0.5959 26 1 -0.3634 0.9346 -0.4272 27 1 1.9087 2.1244 -0.0004 28 1 4.4584 -1.3147 -0.0082 29 1 3.6455 -3.3140 0.2343 30 1 0.0991 -4.6461 -0.3560 31 1 -0.1741 -9.8047 -0.4162 32 1 4.1457 -5.9558 0.1969 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049993974.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:40 Heat of formation + Delta-G solvation = 83.134964 kcal Electronic energy + Delta-G solvation = -20060.629761 eV Core-core repulsion = 16683.825836 eV Total energy + Delta-G solvation = -3376.803926 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.012 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.53904 -41.57006 -39.79001 -36.04693 -35.10229 -34.13363 -32.34616 -31.82476 -30.45217 -29.15001 -27.21122 -26.79963 -24.13043 -22.81766 -21.78010 -21.06038 -20.65892 -19.30438 -18.71495 -17.43698 -16.90117 -16.79452 -16.75786 -15.80369 -15.72738 -15.18052 -14.96421 -14.78227 -14.60851 -14.20562 -13.77369 -13.56390 -13.49156 -13.29388 -13.02630 -12.95836 -12.79768 -12.06136 -11.89403 -11.77286 -11.20516 -11.03533 -10.86556 -10.77064 -10.10771 -9.71868 -9.32147 -8.52454 -8.47269 -6.24049 0.32925 0.77020 1.27682 1.39126 1.40580 1.58489 1.64878 1.74551 2.09813 2.12053 2.42872 2.63173 2.91806 3.08838 3.73795 3.90457 4.01695 4.24188 4.38437 4.43462 4.55069 4.59116 4.75079 4.86887 5.00662 5.05286 5.28055 5.39529 5.45846 5.70770 5.95728 6.05668 6.29896 6.66946 6.73084 7.27799 7.45747 7.66905 8.52330 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.027319 B = 0.002397 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.687296 B =11678.651556 C =12679.329092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.407 5.407 3 C 0.070 3.930 4 C -0.196 4.196 5 Br -0.020 7.020 6 C -0.108 4.108 7 C -0.057 4.057 8 C 0.572 3.428 9 O -0.575 6.575 10 N -0.602 5.602 11 C -0.044 4.044 12 C -0.056 4.056 13 N -0.310 5.310 14 N -0.167 5.167 15 C -0.354 4.354 16 H 0.142 0.858 17 C -0.006 4.006 18 N -0.824 5.824 19 Si 1.019 2.981 20 H -0.267 1.267 21 H -0.277 1.277 22 H -0.242 1.242 23 C -0.077 4.077 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.124 0.876 27 H 0.214 0.786 28 H 0.167 0.833 29 H 0.419 0.581 30 H 0.169 0.831 31 H 0.276 0.724 32 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.886 22.242 1.477 23.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.078 5.078 3 C -0.070 4.070 4 C -0.281 4.281 5 Br 0.063 6.937 6 C -0.136 4.136 7 C -0.170 4.170 8 C 0.361 3.639 9 O -0.457 6.457 10 N -0.246 5.246 11 C -0.150 4.150 12 C -0.231 4.231 13 N -0.142 5.142 14 N 0.064 4.936 15 C -0.485 4.485 16 H 0.159 0.841 17 C -0.218 4.218 18 N -0.452 5.452 19 Si 0.838 3.162 20 H -0.192 1.192 21 H -0.202 1.202 22 H -0.165 1.165 23 C -0.227 4.227 24 H 0.101 0.899 25 H 0.098 0.902 26 H 0.143 0.857 27 H 0.231 0.769 28 H 0.185 0.815 29 H 0.257 0.743 30 H 0.186 0.814 31 H 0.086 0.914 32 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 7.279 21.297 1.223 22.540 hybrid contribution 0.340 -0.224 0.175 0.444 sum 7.620 21.072 1.397 22.451 Atomic orbital electron populations 1.22463 0.74219 1.06155 1.04784 1.44118 1.07971 1.04419 1.51338 1.22456 0.88384 0.92931 1.03194 1.21059 0.92737 0.93993 1.20310 1.96609 1.36297 1.62394 1.98365 1.21483 0.94956 0.94016 1.03122 1.19733 0.90770 0.86971 1.19570 1.17186 0.85241 0.84013 0.77476 1.90673 1.17618 1.84719 1.52705 1.41983 1.11312 1.01940 1.69362 1.17253 0.93011 0.83741 1.20990 1.24165 0.97494 0.92688 1.08757 1.78147 0.99212 1.10038 1.26802 1.44844 1.03928 1.05410 1.39434 1.20639 0.96107 0.77994 1.53742 0.84106 1.26881 0.94564 1.06235 0.94103 1.70398 1.02708 1.35487 1.36614 0.84574 0.79624 0.73320 0.78664 1.19203 1.20168 1.16525 1.21992 0.98050 0.85454 1.17240 0.89870 0.90168 0.85728 0.76913 0.81537 0.74302 0.81381 0.91387 0.79364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.18 10.50 127.77 1.34 2.53 16 2 N -0.41 -9.03 3.16 -534.20 -1.69 -10.72 16 3 C 0.07 1.21 11.34 83.47 0.95 2.16 16 4 C -0.20 -3.87 6.53 22.04 0.14 -3.73 16 5 Br -0.02 -0.35 34.08 -20.37 -0.69 -1.04 16 6 C -0.11 -2.45 10.33 22.59 0.23 -2.22 16 7 C -0.06 -1.56 6.88 40.35 0.28 -1.28 16 8 C 0.57 20.43 7.74 86.44 0.67 21.09 16 9 O -0.58 -24.46 11.93 -4.41 -0.05 -24.51 16 10 N -0.60 -21.31 5.44 -307.50 -1.67 -22.98 16 11 C -0.04 -2.02 6.90 37.75 0.26 -1.76 16 12 C -0.06 -3.03 10.85 85.42 0.93 -2.10 16 13 N -0.31 -18.69 10.41 -56.45 -0.59 -19.28 16 14 N -0.17 -9.28 3.74 -190.00 -0.71 -9.99 16 15 C -0.35 -18.68 10.24 84.01 0.86 -17.82 16 16 H 0.14 6.43 7.84 -2.91 -0.02 6.41 16 17 C -0.01 -0.32 5.50 84.95 0.47 0.15 16 18 N -0.82 -47.54 11.83 21.66 0.26 -47.28 16 19 Si 1.02 38.48 29.55 68.60 2.03 40.51 16 20 H -0.27 -9.81 7.11 99.48 0.71 -9.10 16 21 H -0.28 -10.33 7.11 99.48 0.71 -9.63 16 22 H -0.24 -8.22 7.11 99.48 0.71 -7.52 16 23 C -0.08 -3.55 11.49 83.38 0.96 -2.59 16 24 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.08 1.99 6.52 -2.38 -0.02 1.98 16 26 H 0.12 1.24 8.12 -2.39 -0.02 1.22 16 27 H 0.21 1.92 8.06 -2.91 -0.02 1.90 16 28 H 0.17 3.10 7.49 -2.91 -0.02 3.07 16 29 H 0.42 11.22 7.77 -92.71 -0.72 10.50 16 30 H 0.17 9.15 5.93 -2.91 -0.02 9.13 16 31 H 0.28 14.64 8.31 -92.71 -0.77 13.87 16 32 H 0.19 6.81 8.06 -2.91 -0.02 6.78 16 Total: -1.00 -75.24 305.99 4.43 -70.81 By element: Atomic # 1 Polarization: 29.59 SS G_CDS: 0.47 Total: 30.06 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: 7.08 Total: -5.57 kcal Atomic # 7 Polarization: -105.85 SS G_CDS: -4.40 Total: -110.26 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -0.05 Total: -24.51 kcal Atomic # 14 Polarization: 38.48 SS G_CDS: 2.03 Total: 40.51 kcal Atomic # 35 Polarization: -0.35 SS G_CDS: -0.69 Total: -1.04 kcal Total: -75.24 4.43 -70.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049993974.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.945 kcal (2) G-P(sol) polarization free energy of solvation -75.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds