Wall clock time and date at job start Tue Mar 31 2020 20:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36938 * 119.99462 * 2 1 4 4 H 1.08002 * 119.99949 * 202.38961 * 3 2 1 5 5 C 1.38812 * 120.00017 * 22.39782 * 3 2 1 6 6 N 1.31617 * 120.00323 * 11.14549 * 5 3 2 7 7 Si 1.86801 * 119.99809 * 191.14361 * 5 3 2 8 8 H 1.48502 * 109.47051 * 59.99948 * 7 5 3 9 9 H 1.48504 * 109.46991 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47449 * 299.99691 * 7 5 3 11 11 C 1.46499 * 120.00448 * 180.27694 * 2 1 3 12 12 N 1.46495 * 109.47311 * 269.72437 * 11 2 1 13 13 C 1.39303 * 124.28751 * 89.99818 * 12 11 2 14 14 C 1.38825 * 131.37475 * 359.95596 * 13 12 11 15 15 C 1.38359 * 120.19049 * 180.02562 * 14 13 12 16 16 Br 1.89102 * 119.66312 * 179.97438 * 15 14 13 17 17 C 1.38628 * 120.66873 * 359.95394 * 15 14 13 18 18 C 1.37932 * 120.06531 * 0.05072 * 17 15 14 19 19 C 1.39528 * 119.71225 * 359.97114 * 18 17 15 20 20 C 1.47408 * 133.04063 * 179.97438 * 19 18 17 21 21 O 1.21360 * 127.58843 * 0.02562 * 20 19 18 22 22 C 1.34419 * 124.28623 * 269.70114 * 12 11 2 23 23 O 1.21308 * 126.24145 * 0.02562 * 22 12 11 24 24 H 1.09005 * 109.46801 * 274.33340 * 1 2 3 25 25 H 1.08993 * 109.47826 * 34.33812 * 1 2 3 26 26 H 1.09001 * 109.46594 * 154.34214 * 1 2 3 27 27 H 0.96999 * 120.00323 * 180.02562 * 6 5 3 28 28 H 1.09007 * 109.46570 * 29.72619 * 11 2 1 29 29 H 1.08999 * 109.46915 * 149.72279 * 11 2 1 30 30 H 1.08005 * 119.90440 * 0.02562 * 14 13 12 31 31 H 1.08000 * 119.96809 * 180.02562 * 17 15 14 32 32 H 1.08002 * 120.14602 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1686 1.2213 -0.3563 5 6 1.5340 2.3427 0.4581 6 7 0.3829 2.2689 1.0920 7 14 2.3393 4.0043 0.1748 8 1 2.4975 4.2354 -1.2836 9 1 1.4869 5.0729 0.7552 10 1 3.6732 4.0255 0.8270 11 6 2.1976 -1.2686 -0.0061 12 7 2.4476 -1.6949 1.3730 13 6 1.5848 -2.4988 2.1145 14 6 0.3610 -3.0707 1.7944 15 6 -0.3111 -3.8426 2.7254 16 35 -1.9775 -4.6139 2.2737 17 6 0.2250 -4.0566 3.9858 18 6 1.4396 -3.4975 4.3241 19 6 2.1252 -2.7170 3.3926 20 6 3.4095 -1.9949 3.4358 21 8 4.1907 -1.9286 4.3622 22 6 3.5413 -1.3646 2.0812 23 8 4.4653 -0.6795 1.6959 24 1 -0.3633 0.0777 1.0248 25 1 -0.3634 0.8485 -0.5796 26 1 -0.3632 -0.9264 -0.4450 27 1 -0.0475 3.0772 1.4118 28 1 1.6064 -2.0271 -0.5194 29 1 3.1478 -1.1369 -0.5236 30 1 -0.0677 -2.9126 0.8157 31 1 -0.3091 -4.6615 4.7036 32 1 1.8583 -3.6630 5.3058 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060296131.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:27 Heat of formation + Delta-G solvation = 19.116956 kcal Electronic energy + Delta-G solvation = -21216.995338 eV Core-core repulsion = 17805.122632 eV Total energy + Delta-G solvation = -3411.872706 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.48236 -38.50793 -38.07007 -36.20057 -35.11388 -32.40145 -31.37438 -30.33423 -29.47784 -26.93217 -26.17109 -24.89608 -22.67185 -21.65528 -21.29038 -19.73292 -17.50052 -17.12783 -16.83986 -16.11338 -15.95169 -15.21790 -14.74534 -14.58689 -14.33248 -14.10135 -13.90580 -13.41755 -13.28241 -13.08713 -12.44660 -12.19447 -11.80002 -11.53235 -11.36657 -11.25532 -11.00117 -10.88240 -10.67262 -10.45415 -10.29927 -10.22811 -9.99272 -9.23130 -8.95948 -8.77886 -7.91564 -7.24074 -5.99088 -3.48625 0.11763 1.18117 1.38915 1.75839 2.85790 3.32778 3.35496 3.36908 3.42271 3.57039 3.80745 4.33326 4.55085 4.61378 4.95076 5.05595 5.20708 5.26115 5.27153 5.52251 5.60467 5.76913 5.98877 6.05010 6.09471 6.41650 6.43010 6.68508 7.06824 7.15121 7.29278 7.47307 7.64755 8.07466 8.13991 8.93690 9.51090 9.95134 11.04313 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.013532 B = 0.004683 C = 0.003793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.699287 B = 5977.572061 C = 7380.086779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.153 3.847 2 N -0.569 5.569 3 C -0.272 4.272 4 H 0.079 0.921 5 C 0.014 3.986 6 N -0.898 5.898 7 Si 0.912 3.088 8 H -0.279 1.279 9 H -0.288 1.288 10 H -0.278 1.278 11 C 0.333 3.667 12 N -0.544 5.544 13 C 0.231 3.769 14 C -0.129 4.129 15 C -0.017 4.017 16 Br -0.042 7.042 17 C -0.149 4.149 18 C 0.000 4.000 19 C -0.243 4.243 20 C 0.387 3.613 21 O -0.389 6.389 22 C 0.492 3.508 23 O -0.442 6.442 24 H 0.036 0.964 25 H 0.055 0.945 26 H 0.003 0.997 27 H 0.258 0.742 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.142 0.858 31 H 0.140 0.860 32 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.842 -16.631 2.683 17.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 N -0.288 5.288 3 C -0.402 4.402 4 H 0.097 0.903 5 C -0.187 4.187 6 N -0.540 5.540 7 Si 0.740 3.260 8 H -0.205 1.205 9 H -0.214 1.214 10 H -0.204 1.204 11 C 0.126 3.874 12 N -0.274 5.274 13 C 0.129 3.871 14 C -0.152 4.152 15 C -0.098 4.098 16 Br 0.044 6.956 17 C -0.170 4.170 18 C -0.020 4.020 19 C -0.249 4.249 20 C 0.258 3.742 21 O -0.258 6.258 22 C 0.275 3.725 23 O -0.312 6.312 24 H 0.055 0.945 25 H 0.074 0.926 26 H 0.022 0.978 27 H 0.069 0.931 28 H 0.094 0.906 29 H 0.106 0.894 30 H 0.160 0.840 31 H 0.158 0.842 32 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -5.602 -16.149 2.612 17.292 hybrid contribution 0.474 1.251 0.139 1.345 sum -5.128 -14.899 2.751 15.995 Atomic orbital electron populations 1.21027 0.81564 0.96398 1.00141 1.44887 1.02882 1.01246 1.79743 1.19317 0.98649 0.84566 1.37629 0.90339 1.25155 0.97260 0.99222 0.97022 1.70051 1.17350 1.28056 1.38532 0.86218 0.78893 0.82641 0.78201 1.20542 1.21372 1.20410 1.21963 0.97702 0.87829 0.79872 1.49198 1.17217 1.44354 1.16659 1.18613 0.90634 0.88054 0.89818 1.20181 0.93568 1.00508 1.00970 1.21690 0.92858 0.99082 0.96148 1.96744 1.23624 1.81468 1.93727 1.20872 0.96766 1.03961 0.95411 1.20686 0.92183 0.91171 0.97921 1.20666 0.99828 1.07923 0.96438 1.22889 0.84752 0.78238 0.88361 1.90532 1.46042 1.50956 1.38305 1.21054 0.82972 0.81181 0.87329 1.90750 1.33200 1.32733 1.74518 0.94515 0.92633 0.97814 0.93149 0.90600 0.89437 0.84046 0.84187 0.84184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 3.38 9.01 59.85 0.54 3.92 16 2 N -0.57 -13.15 3.16 -184.86 -0.59 -13.73 16 3 C -0.27 -7.19 9.67 -15.06 -0.15 -7.34 16 4 H 0.08 2.10 7.84 -52.49 -0.41 1.69 16 5 C 0.01 0.38 5.13 -17.43 -0.09 0.29 16 6 N -0.90 -24.98 10.58 55.49 0.59 -24.40 16 7 Si 0.91 21.67 29.57 -169.99 -5.03 16.65 16 8 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 9 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 11 C 0.33 6.25 6.35 -63.76 -0.40 5.85 16 12 N -0.54 -10.16 2.98 -117.02 -0.35 -10.51 16 13 C 0.23 3.73 6.73 -83.41 -0.56 3.17 16 14 C -0.13 -1.80 9.50 -39.32 -0.37 -2.17 16 15 C -0.02 -0.21 6.23 -39.39 -0.25 -0.45 16 16 Br -0.04 -0.44 33.67 -68.01 -2.29 -2.73 16 17 C -0.15 -1.63 9.77 -39.55 -0.39 -2.02 16 18 C 0.00 0.00 10.10 -39.21 -0.40 -0.40 16 19 C -0.24 -3.78 6.33 -104.84 -0.66 -4.45 16 20 C 0.39 7.10 7.97 -30.92 -0.25 6.85 16 21 O -0.39 -7.57 18.03 5.49 0.10 -7.47 16 22 C 0.49 10.09 8.16 -11.49 -0.09 10.00 16 23 O -0.44 -10.40 17.69 5.53 0.10 -10.30 16 24 H 0.04 0.90 7.41 -51.93 -0.38 0.51 16 25 H 0.05 1.34 7.19 -51.93 -0.37 0.97 16 26 H 0.00 0.06 7.73 -51.93 -0.40 -0.34 16 27 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 28 H 0.08 1.16 7.43 -51.92 -0.39 0.77 16 29 H 0.09 1.65 7.86 -51.93 -0.41 1.24 16 30 H 0.14 1.87 7.67 -52.48 -0.40 1.47 16 31 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 309.52 15.07 4.66 4.66 Total: -1.00 -30.13 309.52 -8.62 -38.75 By element: Atomic # 1 Polarization: -1.42 SS G_CDS: -2.75 Total: -4.16 kcal Atomic # 6 Polarization: 16.31 SS G_CDS: -3.07 Total: 13.24 kcal Atomic # 7 Polarization: -48.29 SS G_CDS: -0.35 Total: -48.64 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: 0.20 Total: -17.77 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.65 kcal Atomic # 35 Polarization: -0.44 SS G_CDS: -2.29 Total: -2.73 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.13 -8.62 -38.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060296131.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.865 kcal (2) G-P(sol) polarization free energy of solvation -30.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds