Wall clock time and date at job start Tue Mar 31 2020 20:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86797 * 119.99870 * 2 1 4 4 H 1.48497 * 109.47373 * 239.99948 * 3 2 1 5 5 H 1.48503 * 109.47331 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47179 * 119.99936 * 3 2 1 7 7 C 1.38947 * 119.99714 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99608 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00528 * 359.97438 * 7 2 1 10 10 C 1.34771 * 120.00255 * 180.02562 * 9 7 2 11 11 O 1.21290 * 119.99915 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99994 * 180.02562 * 10 9 7 13 13 C 1.53875 * 113.07984 * 299.73279 * 12 10 9 14 14 C 1.54829 * 100.90168 * 267.21294 * 13 12 10 15 15 C 1.51195 * 104.37290 * 334.55202 * 14 13 12 16 16 O 1.21305 * 124.77480 * 189.97032 * 15 14 13 17 17 N 1.36498 * 110.75379 * 10.62942 * 15 14 13 18 18 C 1.40983 * 140.64421 * 193.95826 * 17 15 14 19 19 C 1.39885 * 126.88737 * 327.07004 * 18 17 15 20 20 C 1.37890 * 120.66212 * 172.25041 * 19 18 17 21 21 Cl 1.73602 * 119.59858 * 179.97438 * 20 19 18 22 22 C 1.38410 * 120.80431 * 359.97137 * 20 19 18 23 23 C 1.38395 * 119.41077 * 1.70563 * 22 20 19 24 24 C 1.37982 * 119.82210 * 0.02562 * 23 22 20 25 25 S 1.77721 * 131.99989 * 173.10590 * 24 23 22 26 26 H 0.97000 * 119.99808 * 359.97438 * 1 2 3 27 27 H 0.97001 * 119.99552 * 0.02562 * 9 7 2 28 28 H 1.08996 * 111.13042 * 25.12035 * 13 12 10 29 29 H 1.08999 * 111.13479 * 149.26484 * 13 12 10 30 30 H 1.09003 * 110.45106 * 93.27628 * 14 13 12 31 31 H 1.08997 * 110.45486 * 215.70277 * 14 13 12 32 32 H 1.07999 * 119.66557 * 351.97201 * 19 18 17 33 33 H 1.08001 * 120.29194 * 181.70886 * 22 20 19 34 34 H 1.08003 * 120.08935 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6965 -1.2124 5 1 1.2831 2.7465 0.0006 6 1 3.1019 1.6964 1.2126 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3907 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0010 12 6 1.2438 -4.8629 -0.0011 13 6 0.3337 -5.0345 1.2277 14 6 1.2806 -5.7928 2.1898 15 6 2.2563 -6.4996 1.2764 16 8 3.0557 -7.3389 1.6345 17 7 2.1264 -6.0546 -0.0075 18 6 2.5058 -6.3934 -1.3223 19 6 3.6893 -7.0252 -1.7183 20 6 3.8629 -7.4402 -3.0218 21 17 5.3431 -8.2209 -3.4833 22 6 2.8712 -7.2418 -3.9668 23 6 1.7072 -6.5874 -3.6033 24 6 1.5472 -6.1403 -2.3077 25 16 0.2909 -5.1451 -1.5397 26 1 -0.4850 0.8401 0.0004 27 1 0.3534 -2.3906 -0.0005 28 1 0.0451 -4.0681 1.6410 29 1 -0.5441 -5.6338 0.9860 30 1 1.8057 -5.0916 2.8385 31 1 0.7211 -6.5148 2.7845 32 1 4.4768 -7.1856 -0.9968 33 1 3.0046 -7.5947 -4.9787 34 1 0.9260 -6.4271 -4.3317 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060336262.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:16 Heat of formation + Delta-G solvation = -20.817825 kcal Electronic energy + Delta-G solvation = -24494.918631 eV Core-core repulsion = 20738.494779 eV Total energy + Delta-G solvation = -3756.423851 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 338.028 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.07496 -39.00571 -38.24884 -36.71690 -36.15718 -34.24293 -33.22302 -31.50846 -30.91659 -29.25863 -28.26452 -25.14658 -23.62789 -23.50786 -22.22504 -20.24226 -19.61519 -18.36281 -18.14706 -16.99997 -16.87768 -15.96998 -15.62127 -15.42558 -15.14449 -14.69890 -14.50033 -14.17618 -14.04908 -13.77358 -13.55696 -13.28260 -12.98109 -12.87723 -12.66644 -12.09761 -11.87599 -11.75714 -11.54565 -11.34196 -11.19982 -11.06279 -10.60977 -10.59316 -10.44639 -10.37817 -10.02667 -9.75815 -9.51114 -8.89225 -8.38556 -8.25484 -7.31367 -6.67116 -4.06691 0.77884 1.08661 1.29984 1.82352 2.05159 2.37779 2.51513 3.07176 3.14777 3.18324 3.38147 3.60425 3.93242 4.05884 4.25689 4.38444 4.58846 4.74389 4.90200 5.03735 5.05191 5.11901 5.20074 5.45622 5.56756 5.57576 5.71700 5.76692 5.90971 5.96230 6.01125 6.08988 6.51278 6.98039 7.31625 7.74150 7.88346 8.27992 8.88897 9.18595 9.68255 10.48404 Molecular weight = 338.03amu Principal moments of inertia in cm(-1) A = 0.012843 B = 0.004157 C = 0.003773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.697078 B = 6734.282175 C = 7418.597921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.031 3.969 3 Si 0.935 3.065 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.271 1.271 7 C -0.300 4.300 8 H 0.107 0.893 9 N -0.527 5.527 10 C 0.437 3.563 11 O -0.571 6.571 12 C 0.146 3.854 13 C -0.111 4.111 14 C -0.135 4.135 15 C 0.553 3.447 16 O -0.502 6.502 17 N -0.552 5.552 18 C 0.181 3.819 19 C -0.100 4.100 20 C -0.013 4.013 21 Cl -0.066 7.066 22 C -0.112 4.112 23 C -0.054 4.054 24 C -0.103 4.103 25 S -0.096 6.096 26 H 0.278 0.722 27 H 0.396 0.604 28 H 0.112 0.888 29 H 0.105 0.895 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.139 0.861 33 H 0.144 0.856 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.753 -11.745 -3.222 12.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.173 4.173 3 Si 0.761 3.239 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.196 1.196 7 C -0.430 4.430 8 H 0.125 0.875 9 N -0.162 5.162 10 C 0.218 3.782 11 O -0.456 6.456 12 C -0.054 4.054 13 C -0.150 4.150 14 C -0.176 4.176 15 C 0.343 3.657 16 O -0.375 6.375 17 N -0.279 5.279 18 C 0.082 3.918 19 C -0.122 4.122 20 C -0.043 4.043 21 Cl -0.037 7.037 22 C -0.133 4.133 23 C -0.078 4.078 24 C -0.219 4.219 25 S 0.151 5.849 26 H 0.088 0.912 27 H 0.230 0.770 28 H 0.130 0.870 29 H 0.124 0.876 30 H 0.139 0.861 31 H 0.138 0.862 32 H 0.157 0.843 33 H 0.162 0.838 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.696 -11.778 -3.281 12.520 hybrid contribution 1.250 0.489 0.169 1.353 sum -1.447 -11.289 -3.112 11.799 Atomic orbital electron populations 1.69600 1.06047 1.29046 1.47765 1.25348 0.95700 1.00006 0.96265 0.85842 0.78870 0.79779 0.79408 1.19572 1.20636 1.19590 1.19740 0.93568 0.81571 1.48158 0.87501 1.41669 1.09390 1.03933 1.61207 1.18862 0.87910 0.83310 0.88129 1.90602 1.12630 1.85655 1.56707 1.24829 0.91920 0.91012 0.97607 1.22794 0.96848 1.03977 0.91417 1.22346 0.96534 1.01124 0.97549 1.21566 0.83325 0.80884 0.79895 1.90717 1.36949 1.32893 1.76903 1.47081 1.49627 1.26625 1.04612 1.17846 0.93383 0.98428 0.82119 1.20525 0.96095 1.00298 0.95318 1.20412 0.89230 1.00841 0.93812 1.98366 1.33907 1.79168 1.92273 1.20963 0.92393 1.00564 0.99386 1.20097 0.97602 0.97547 0.92601 1.22083 0.97042 1.05503 0.97236 1.86482 1.21152 1.60844 1.16459 0.91213 0.77036 0.86964 0.87632 0.86099 0.86193 0.84269 0.83776 0.83792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.02 13.05 55.50 0.72 -21.30 16 2 C 0.03 0.77 5.50 -17.47 -0.10 0.68 16 3 Si 0.94 19.62 29.55 -169.99 -5.02 14.60 16 4 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 5 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 6 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 7 C -0.30 -7.78 9.68 -14.94 -0.14 -7.92 16 8 H 0.11 2.93 7.16 -52.48 -0.38 2.56 16 9 N -0.53 -12.39 5.10 -10.96 -0.06 -12.44 16 10 C 0.44 9.92 6.79 -10.99 -0.07 9.85 16 11 O -0.57 -15.32 16.22 5.55 0.09 -15.23 16 12 C 0.15 2.61 0.78 -67.64 -0.05 2.56 16 13 C -0.11 -1.47 6.36 -25.31 -0.16 -1.63 16 14 C -0.13 -1.72 6.83 -26.68 -0.18 -1.91 16 15 C 0.55 9.71 8.40 -9.96 -0.08 9.63 16 16 O -0.50 -10.02 18.03 5.54 0.10 -9.92 16 17 N -0.55 -10.19 2.86 -100.45 -0.29 -10.48 16 18 C 0.18 3.30 6.60 -82.45 -0.54 2.75 16 19 C -0.10 -1.69 9.81 -39.09 -0.38 -2.08 16 20 C -0.01 -0.19 6.29 -39.65 -0.25 -0.44 16 21 Cl -0.07 -0.83 28.92 -51.86 -1.50 -2.33 16 22 C -0.11 -1.36 9.86 -39.46 -0.39 -1.75 16 23 C -0.05 -0.71 10.05 -39.62 -0.40 -1.10 16 24 C -0.10 -1.69 6.59 -39.10 -0.26 -1.94 16 25 S -0.10 -1.57 22.13 -107.50 -2.38 -3.95 16 26 H 0.28 6.54 8.31 -40.82 -0.34 6.20 16 27 H 0.40 8.81 7.79 -40.82 -0.32 8.49 16 28 H 0.11 1.44 7.73 -51.93 -0.40 1.04 16 29 H 0.11 1.13 7.83 -51.93 -0.41 0.72 16 30 H 0.12 1.51 8.14 -51.93 -0.42 1.09 16 31 H 0.12 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.14 2.45 8.06 -52.49 -0.42 2.03 16 33 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 34 H 0.14 1.46 8.06 -52.48 -0.42 1.04 16 LS Contribution 330.02 15.07 4.97 4.97 Total: -1.00 -31.47 330.02 -9.13 -40.59 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -2.75 Total: 8.81 kcal Atomic # 6 Polarization: 9.71 SS G_CDS: -3.02 Total: 6.69 kcal Atomic # 7 Polarization: -44.61 SS G_CDS: 0.38 Total: -44.23 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: 0.19 Total: -25.15 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.60 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.38 Total: -3.95 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.50 Total: -2.33 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.47 -9.13 -40.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060336262.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.773 kcal (2) G-P(sol) polarization free energy of solvation -31.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds