Wall clock time and date at job start Tue Mar 31 2020 20:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86797 * 119.99870 * 2 1 4 4 H 1.48497 * 109.47373 * 239.99948 * 3 2 1 5 5 H 1.48503 * 109.47331 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47179 * 119.99936 * 3 2 1 7 7 C 1.38947 * 119.99714 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99608 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00528 * 359.97438 * 7 2 1 10 10 C 1.34771 * 120.00255 * 180.02562 * 9 7 2 11 11 O 1.21290 * 119.99915 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99994 * 180.02562 * 10 9 7 13 13 C 1.53875 * 113.07984 * 299.73279 * 12 10 9 14 14 C 1.54829 * 100.90168 * 267.21294 * 13 12 10 15 15 C 1.51195 * 104.37290 * 334.55202 * 14 13 12 16 16 O 1.21305 * 124.77480 * 189.97032 * 15 14 13 17 17 N 1.36498 * 110.75379 * 10.62942 * 15 14 13 18 18 C 1.40983 * 140.64421 * 193.95826 * 17 15 14 19 19 C 1.39885 * 126.88737 * 327.07004 * 18 17 15 20 20 C 1.37890 * 120.66212 * 172.25041 * 19 18 17 21 21 Cl 1.73602 * 119.59858 * 179.97438 * 20 19 18 22 22 C 1.38410 * 120.80431 * 359.97137 * 20 19 18 23 23 C 1.38395 * 119.41077 * 1.70563 * 22 20 19 24 24 C 1.37982 * 119.82210 * 0.02562 * 23 22 20 25 25 S 1.77721 * 131.99989 * 173.10590 * 24 23 22 26 26 H 0.97000 * 119.99808 * 359.97438 * 1 2 3 27 27 H 0.97001 * 119.99552 * 0.02562 * 9 7 2 28 28 H 1.08996 * 111.13042 * 25.12035 * 13 12 10 29 29 H 1.08999 * 111.13479 * 149.26484 * 13 12 10 30 30 H 1.09003 * 110.45106 * 93.27628 * 14 13 12 31 31 H 1.08997 * 110.45486 * 215.70277 * 14 13 12 32 32 H 1.07999 * 119.66557 * 351.97201 * 19 18 17 33 33 H 1.08001 * 120.29194 * 181.70886 * 22 20 19 34 34 H 1.08003 * 120.08935 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6965 -1.2124 5 1 1.2831 2.7465 0.0006 6 1 3.1019 1.6964 1.2126 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3907 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0010 12 6 1.2438 -4.8629 -0.0011 13 6 0.3337 -5.0345 1.2277 14 6 1.2806 -5.7928 2.1898 15 6 2.2563 -6.4996 1.2764 16 8 3.0557 -7.3389 1.6345 17 7 2.1264 -6.0546 -0.0075 18 6 2.5058 -6.3934 -1.3223 19 6 3.6893 -7.0252 -1.7183 20 6 3.8629 -7.4402 -3.0218 21 17 5.3431 -8.2209 -3.4833 22 6 2.8712 -7.2418 -3.9668 23 6 1.7072 -6.5874 -3.6033 24 6 1.5472 -6.1403 -2.3077 25 16 0.2909 -5.1451 -1.5397 26 1 -0.4850 0.8401 0.0004 27 1 0.3534 -2.3906 -0.0005 28 1 0.0451 -4.0681 1.6410 29 1 -0.5441 -5.6338 0.9860 30 1 1.8057 -5.0916 2.8385 31 1 0.7211 -6.5148 2.7845 32 1 4.4768 -7.1856 -0.9968 33 1 3.0046 -7.5947 -4.9787 34 1 0.9260 -6.4271 -4.3317 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060336262.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:15 Heat of formation + Delta-G solvation = -40.784379 kcal Electronic energy + Delta-G solvation = -24495.784445 eV Core-core repulsion = 20738.494779 eV Total energy + Delta-G solvation = -3757.289666 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 338.028 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.40974 -40.24712 -39.92531 -37.99735 -37.41724 -36.14438 -34.40791 -33.36456 -32.08641 -30.44678 -29.69285 -26.91821 -24.80395 -24.75358 -23.56651 -21.60148 -21.08695 -20.19731 -19.44433 -18.58709 -18.09378 -17.22171 -17.14315 -16.75397 -16.49251 -16.26958 -15.90833 -15.69374 -15.44619 -15.08170 -14.89451 -14.80366 -14.43547 -13.99932 -13.84727 -13.56822 -13.23481 -13.07052 -12.99195 -12.67167 -12.52884 -12.41762 -12.14861 -12.13383 -11.88510 -11.71786 -11.61644 -11.38370 -10.75204 -10.54919 -10.15443 -9.65365 -8.63255 -8.52724 -6.04609 -0.42804 -0.09447 0.00454 0.56830 0.87043 1.06928 1.27705 1.39245 1.43602 1.52937 1.91435 2.17666 2.26804 2.73917 2.81238 3.01975 3.20135 3.43646 3.63608 3.84478 3.89384 3.98872 4.00430 4.18073 4.38604 4.45794 4.60245 4.69821 4.77155 4.82692 4.89253 4.96412 5.33949 5.40560 5.68871 5.83742 6.40679 6.55278 6.98183 7.31851 7.85667 8.59681 Molecular weight = 338.03amu Principal moments of inertia in cm(-1) A = 0.012843 B = 0.004157 C = 0.003773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.697078 B = 6734.282175 C = 7418.597921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.005 3.995 3 Si 0.991 3.009 4 H -0.275 1.275 5 H -0.265 1.265 6 H -0.271 1.271 7 C -0.337 4.337 8 H 0.079 0.921 9 N -0.529 5.529 10 C 0.437 3.563 11 O -0.621 6.621 12 C 0.138 3.862 13 C -0.101 4.101 14 C -0.125 4.125 15 C 0.539 3.461 16 O -0.539 6.539 17 N -0.561 5.561 18 C 0.140 3.860 19 C -0.123 4.123 20 C -0.015 4.015 21 Cl -0.052 7.052 22 C -0.094 4.094 23 C -0.044 4.044 24 C -0.124 4.124 25 S -0.070 6.070 26 H 0.284 0.716 27 H 0.401 0.599 28 H 0.117 0.883 29 H 0.140 0.860 30 H 0.122 0.878 31 H 0.165 0.835 32 H 0.117 0.883 33 H 0.186 0.814 34 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.579 -12.088 -4.491 13.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.198 4.198 3 Si 0.814 3.186 4 H -0.200 1.200 5 H -0.189 1.189 6 H -0.196 1.196 7 C -0.467 4.467 8 H 0.097 0.903 9 N -0.164 5.164 10 C 0.220 3.780 11 O -0.509 6.509 12 C -0.062 4.062 13 C -0.141 4.141 14 C -0.165 4.165 15 C 0.331 3.669 16 O -0.415 6.415 17 N -0.288 5.288 18 C 0.042 3.958 19 C -0.146 4.146 20 C -0.045 4.045 21 Cl -0.023 7.023 22 C -0.115 4.115 23 C -0.068 4.068 24 C -0.239 4.239 25 S 0.176 5.824 26 H 0.094 0.906 27 H 0.236 0.764 28 H 0.136 0.864 29 H 0.158 0.842 30 H 0.140 0.860 31 H 0.183 0.817 32 H 0.136 0.864 33 H 0.204 0.796 34 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -4.560 -12.113 -4.561 13.723 hybrid contribution 1.908 0.484 0.422 2.013 sum -2.652 -11.629 -4.139 12.626 Atomic orbital electron populations 1.69633 1.06660 1.30083 1.47462 1.25989 0.96506 1.02113 0.95220 0.85025 0.77963 0.76650 0.78975 1.19993 1.18941 1.19596 1.19617 0.92756 0.83286 1.51007 0.90254 1.41605 1.09461 1.03757 1.61593 1.19672 0.87615 0.84772 0.85908 1.90563 1.15169 1.86955 1.58166 1.24617 0.92520 0.88205 1.00835 1.22951 0.97025 1.04991 0.89088 1.22506 0.95574 1.01612 0.96786 1.22556 0.83512 0.80538 0.80254 1.90681 1.38660 1.34696 1.77420 1.47349 1.49857 1.26460 1.05143 1.18284 0.94602 1.00159 0.82783 1.20544 0.95685 1.01932 0.96408 1.20600 0.90341 1.00339 0.93219 1.98370 1.33225 1.78777 1.91944 1.21456 0.90927 0.98559 1.00537 1.20651 0.98516 0.95733 0.91851 1.22438 0.96889 1.06345 0.98217 1.86222 1.19848 1.60840 1.15476 0.90584 0.76368 0.86437 0.84188 0.85977 0.81733 0.86448 0.79634 0.80113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -44.22 13.05 21.66 0.28 -43.94 16 2 C 0.00 0.24 5.50 84.92 0.47 0.70 16 3 Si 0.99 40.09 29.55 68.60 2.03 42.11 16 4 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 5 H -0.27 -9.98 7.11 99.48 0.71 -9.28 16 6 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 7 C -0.34 -17.97 9.68 84.04 0.81 -17.16 16 8 H 0.08 4.60 7.16 -2.91 -0.02 4.57 16 9 N -0.53 -25.39 5.10 -306.99 -1.57 -26.96 16 10 C 0.44 20.45 6.79 87.66 0.60 21.04 16 11 O -0.62 -34.99 16.22 -3.06 -0.05 -35.04 16 12 C 0.14 4.92 0.78 44.19 0.03 4.96 16 13 C -0.10 -2.52 6.36 31.51 0.20 -2.32 16 14 C -0.12 -3.03 6.83 30.63 0.21 -2.82 16 15 C 0.54 19.26 8.40 87.54 0.74 19.99 16 16 O -0.54 -22.37 18.03 -3.11 -0.06 -22.43 16 17 N -0.56 -21.10 2.86 -589.10 -1.68 -22.79 16 18 C 0.14 5.18 6.60 38.44 0.25 5.44 16 19 C -0.12 -4.32 9.81 22.59 0.22 -4.10 16 20 C -0.02 -0.42 6.29 22.23 0.14 -0.28 16 21 Cl -0.05 -1.26 28.92 -2.72 -0.08 -1.34 16 22 C -0.09 -2.02 9.86 22.35 0.22 -1.80 16 23 C -0.04 -1.01 10.05 22.25 0.22 -0.79 16 24 C -0.12 -3.91 6.59 22.58 0.15 -3.76 16 25 S -0.07 -2.19 22.13 -56.49 -1.25 -3.44 16 26 H 0.28 13.04 8.31 -92.71 -0.77 12.27 16 27 H 0.40 17.95 7.79 -92.71 -0.72 17.23 16 28 H 0.12 2.83 7.73 -2.39 -0.02 2.81 16 29 H 0.14 2.53 7.83 -2.39 -0.02 2.51 16 30 H 0.12 2.98 8.14 -2.39 -0.02 2.96 16 31 H 0.17 2.50 8.14 -2.39 -0.02 2.48 16 32 H 0.12 4.49 8.06 -2.91 -0.02 4.47 16 33 H 0.19 2.44 8.06 -2.91 -0.02 2.42 16 34 H 0.18 2.84 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -72.52 330.02 2.35 -70.17 By element: Atomic # 1 Polarization: 24.08 SS G_CDS: 0.46 Total: 24.55 kcal Atomic # 6 Polarization: 14.85 SS G_CDS: 4.26 Total: 19.11 kcal Atomic # 7 Polarization: -90.72 SS G_CDS: -2.97 Total: -93.68 kcal Atomic # 8 Polarization: -57.37 SS G_CDS: -0.11 Total: -57.47 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 2.03 Total: 42.11 kcal Atomic # 16 Polarization: -2.19 SS G_CDS: -1.25 Total: -3.44 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -0.08 Total: -1.34 kcal Total: -72.52 2.35 -70.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060336262.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.383 kcal (2) G-P(sol) polarization free energy of solvation -72.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds