Wall clock time and date at job start Tue Mar 31 2020 20:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47249 * 344.74043 * 3 2 1 5 5 C 1.37100 * 120.00034 * 263.95257 * 4 3 2 6 6 H 1.07994 * 119.99428 * 200.21905 * 5 4 3 7 7 C 1.38946 * 119.99853 * 20.21553 * 5 4 3 8 8 N 1.31413 * 120.00257 * 21.43190 * 7 5 4 9 9 Si 1.86796 * 119.99870 * 201.42811 * 7 5 4 10 10 H 1.48498 * 109.47341 * 89.99913 * 9 7 5 11 11 H 1.48504 * 109.47178 * 210.00569 * 9 7 5 12 12 H 1.48502 * 109.47297 * 330.00223 * 9 7 5 13 13 C 1.34780 * 119.99625 * 83.95103 * 4 3 2 14 14 O 1.21293 * 119.99655 * 180.02562 * 13 4 3 15 15 C 1.50693 * 120.00080 * 0.27197 * 13 4 3 16 16 O 1.42913 * 109.46847 * 179.72397 * 15 13 4 17 17 C 1.35900 * 116.99692 * 179.97438 * 16 15 13 18 18 C 1.38756 * 120.05048 * 359.73246 * 17 16 15 19 19 C 1.38136 * 119.95906 * 179.72545 * 18 17 16 20 20 C 1.38268 * 120.06698 * 0.56465 * 19 18 17 21 21 C 1.38337 * 120.10180 * 359.70754 * 20 19 18 22 22 Br 1.89099 * 119.98452 * 180.02562 * 21 20 19 23 23 C 1.38260 * 120.03284 * 359.97438 * 21 20 19 24 24 H 1.08999 * 109.47234 * 224.74008 * 3 2 1 25 25 H 1.09003 * 109.47142 * 104.74274 * 3 2 1 26 26 H 0.96998 * 120.00052 * 180.02562 * 8 7 5 27 27 H 1.08996 * 109.47479 * 299.72640 * 15 13 4 28 28 H 1.08998 * 109.47362 * 59.73074 * 15 13 4 29 29 H 1.08001 * 120.02284 * 0.02562 * 18 17 16 30 30 H 1.08003 * 119.96370 * 180.27300 * 19 18 17 31 31 H 1.07999 * 119.94899 * 179.72517 * 20 19 18 32 32 H 1.07995 * 120.03164 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0969 -1.3317 0.3635 5 6 3.4435 -1.6040 1.6617 6 1 4.0932 -2.4377 1.8835 7 6 2.9589 -0.8074 2.6919 8 7 1.8759 -0.0856 2.5106 9 14 3.8470 -0.7626 4.3346 10 1 4.8687 0.3149 4.3159 11 1 2.8680 -0.4978 5.4195 12 1 4.5102 -2.0694 4.5747 13 6 3.2060 -2.2896 -0.5783 14 8 3.6104 -3.3928 -0.2773 15 6 2.8308 -1.9883 -2.0064 16 8 3.0379 -3.1525 -2.8090 17 6 2.7451 -3.0498 -4.1321 18 6 2.2628 -1.8546 -4.6462 19 6 1.9711 -1.7506 -5.9924 20 6 2.1481 -2.8396 -6.8258 21 6 2.6234 -4.0341 -6.3150 22 35 2.8648 -5.5212 -7.4579 23 6 2.9229 -4.1409 -4.9694 24 1 2.9710 0.7308 0.7234 25 1 2.9712 0.2623 -0.9939 26 1 1.5378 0.4708 3.2296 27 1 1.7815 -1.6970 -2.0527 28 1 3.4509 -1.1739 -2.3809 29 1 2.1202 -1.0047 -3.9952 30 1 1.5999 -0.8190 -6.3935 31 1 1.9152 -2.7574 -7.8771 32 1 3.2943 -5.0734 -4.5708 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060859731.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:50 Heat of formation + Delta-G solvation = -15.524366 kcal Electronic energy + Delta-G solvation = -20205.850328 eV Core-core repulsion = 16792.475461 eV Total energy + Delta-G solvation = -3413.374866 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.45659 -40.39545 -38.45627 -37.55088 -36.18985 -33.88269 -33.23448 -31.79315 -30.05412 -29.72815 -28.98017 -26.37344 -23.75224 -23.14542 -21.08960 -19.83512 -19.40871 -18.30099 -17.86358 -17.29082 -17.07455 -16.92036 -16.33372 -15.87534 -15.36103 -15.23227 -14.85577 -14.70276 -14.50039 -14.09685 -13.84814 -13.68581 -13.43228 -13.14622 -12.91314 -12.69799 -12.51607 -12.36820 -12.17477 -12.10429 -12.00316 -11.58531 -11.33176 -11.16336 -10.52030 -9.98403 -9.87471 -9.31137 -8.45355 -6.03538 0.02489 0.31981 0.51512 1.36811 1.47412 1.56326 1.68637 1.84286 2.14071 2.21929 2.38162 2.58754 2.95192 3.12546 3.51421 3.67231 3.83437 3.93010 4.06689 4.12793 4.13412 4.25441 4.40994 4.54840 4.77467 4.84553 5.10233 5.24082 5.32266 5.45804 5.53970 5.93654 6.24920 6.39632 6.97871 7.05219 7.24514 7.79986 8.58421 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.028510 B = 0.002536 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.880538 B =11036.932270 C =11772.593777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C 0.253 3.747 3 C 0.216 3.784 4 N -0.444 5.444 5 C -0.344 4.344 6 H 0.082 0.918 7 C 0.012 3.988 8 N -0.887 5.887 9 Si 0.988 3.012 10 H -0.255 1.255 11 H -0.287 1.287 12 H -0.279 1.279 13 C 0.445 3.555 14 O -0.605 6.605 15 C 0.057 3.943 16 O -0.316 6.316 17 C 0.116 3.884 18 C -0.197 4.197 19 C -0.064 4.064 20 C -0.130 4.130 21 C -0.060 4.060 22 Br -0.041 7.041 23 C -0.146 4.146 24 H 0.128 0.872 25 H 0.147 0.853 26 H 0.277 0.723 27 H 0.092 0.908 28 H 0.130 0.870 29 H 0.155 0.845 30 H 0.172 0.828 31 H 0.158 0.842 32 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.813 1.513 -21.025 21.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.182 5.182 2 C -0.065 4.065 3 C 0.090 3.910 4 N -0.165 5.165 5 C -0.471 4.471 6 H 0.100 0.900 7 C -0.192 4.192 8 N -0.525 5.525 9 Si 0.812 3.188 10 H -0.180 1.180 11 H -0.212 1.212 12 H -0.204 1.204 13 C 0.235 3.765 14 O -0.490 6.490 15 C -0.021 4.021 16 O -0.229 6.229 17 C 0.070 3.930 18 C -0.216 4.216 19 C -0.082 4.082 20 C -0.150 4.150 21 C -0.140 4.140 22 Br 0.045 6.955 23 C -0.167 4.167 24 H 0.146 0.854 25 H 0.165 0.835 26 H 0.087 0.913 27 H 0.110 0.890 28 H 0.147 0.853 29 H 0.173 0.827 30 H 0.189 0.811 31 H 0.176 0.824 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.396 0.373 -21.073 21.123 hybrid contribution 0.407 0.078 1.717 1.766 sum 1.803 0.450 -19.357 19.446 Atomic orbital electron populations 1.80930 1.14715 1.09113 1.13422 1.29714 0.95784 0.91861 0.89148 1.19200 0.80188 0.86968 1.04634 1.43689 1.56414 1.08917 1.07519 1.19616 1.28895 1.16724 0.81915 0.90041 1.25901 0.94847 0.96201 1.02216 1.69907 1.18204 1.28627 1.35765 0.84998 0.78096 0.78942 0.76715 1.17992 1.21243 1.20433 1.20493 0.83755 0.84542 0.87757 1.90564 1.51107 1.24301 1.83003 1.22585 1.03098 0.88175 0.88236 1.86154 1.81899 1.37748 1.17068 1.19229 0.95952 0.95087 0.82726 1.21773 1.04261 0.97155 0.98394 1.21381 0.95725 0.99559 0.91553 1.21368 1.00746 0.90942 1.01943 1.21595 1.04890 0.94611 0.92894 1.96711 1.96316 1.39833 1.62634 1.20364 1.05706 0.98763 0.91833 0.85382 0.83535 0.91323 0.88997 0.85272 0.82723 0.81055 0.82446 0.85343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -22.00 18.54 20.00 0.37 -21.63 16 2 C 0.25 9.97 12.84 89.44 1.15 11.12 16 3 C 0.22 7.32 4.91 84.57 0.42 7.74 16 4 N -0.44 -19.54 2.60 -645.42 -1.68 -21.22 16 5 C -0.34 -17.35 9.27 84.04 0.78 -16.57 16 6 H 0.08 4.50 7.43 -2.91 -0.02 4.48 16 7 C 0.01 0.55 4.84 84.93 0.41 0.96 16 8 N -0.89 -42.37 9.58 21.66 0.21 -42.16 16 9 Si 0.99 38.64 29.60 68.60 2.03 40.67 16 10 H -0.26 -9.20 7.11 99.48 0.71 -8.49 16 11 H -0.29 -11.26 7.11 99.48 0.71 -10.55 16 12 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 13 C 0.45 19.87 7.64 87.65 0.67 20.54 16 14 O -0.61 -33.43 16.17 15.97 0.26 -33.17 16 15 C 0.06 1.83 3.83 71.23 0.27 2.10 16 16 O -0.32 -11.35 9.67 -73.39 -0.71 -12.06 16 17 C 0.12 3.32 6.69 22.50 0.15 3.47 16 18 C -0.20 -4.14 9.04 22.37 0.20 -3.94 16 19 C -0.06 -1.02 10.04 22.25 0.22 -0.80 16 20 C -0.13 -2.27 9.78 22.30 0.22 -2.05 16 21 C -0.06 -1.35 6.22 22.30 0.14 -1.21 16 22 Br -0.04 -0.80 33.70 -20.37 -0.69 -1.49 16 23 C -0.15 -4.00 9.73 22.38 0.22 -3.78 16 24 H 0.13 4.43 6.63 -2.39 -0.02 4.42 16 25 H 0.15 3.07 6.68 -2.39 -0.02 3.06 16 26 H 0.28 12.76 8.31 -92.71 -0.77 11.99 16 27 H 0.09 2.71 7.02 -2.39 -0.02 2.70 16 28 H 0.13 2.86 6.94 -2.39 -0.02 2.84 16 29 H 0.16 2.57 6.30 -2.91 -0.02 2.55 16 30 H 0.17 1.48 8.06 -2.91 -0.02 1.46 16 31 H 0.16 1.92 8.06 -2.91 -0.02 1.89 16 32 H 0.13 3.69 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -69.93 309.48 5.82 -64.12 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: 1.18 Total: 9.35 kcal Atomic # 6 Polarization: 12.74 SS G_CDS: 4.85 Total: 17.58 kcal Atomic # 7 Polarization: -83.90 SS G_CDS: -1.10 Total: -85.00 kcal Atomic # 8 Polarization: -44.78 SS G_CDS: -0.45 Total: -45.23 kcal Atomic # 14 Polarization: 38.64 SS G_CDS: 2.03 Total: 40.67 kcal Atomic # 35 Polarization: -0.80 SS G_CDS: -0.69 Total: -1.49 kcal Total: -69.93 5.82 -64.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060859731.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.592 kcal (2) G-P(sol) polarization free energy of solvation -69.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds