Wall clock time and date at job start Tue Mar 31 2020 20:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46493 * 109.47261 * 61.44452 * 3 2 1 5 5 C 1.37101 * 120.00324 * 264.22771 * 4 3 2 6 6 H 1.08000 * 120.00100 * 197.71999 * 5 4 3 7 7 C 1.38950 * 119.99556 * 17.72490 * 5 4 3 8 8 N 1.31409 * 120.00377 * 21.41870 * 7 5 4 9 9 Si 1.86797 * 119.99733 * 201.41610 * 7 5 4 10 10 H 1.48504 * 109.47321 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47393 * 120.00052 * 9 7 5 12 12 H 1.48505 * 109.47046 * 240.00136 * 9 7 5 13 13 C 1.34776 * 119.99768 * 84.23223 * 4 3 2 14 14 O 1.21296 * 119.99837 * 179.97438 * 13 4 3 15 15 C 1.50696 * 120.00313 * 359.97438 * 13 4 3 16 16 O 1.42899 * 109.47433 * 180.02562 * 15 13 4 17 17 C 1.35914 * 117.00079 * 179.97438 * 16 15 13 18 18 C 1.38729 * 120.04576 * 0.27432 * 17 16 15 19 19 C 1.38139 * 119.95340 * 180.25048 * 18 17 16 20 20 C 1.38346 * 120.04541 * 359.49631 * 19 18 17 21 21 Br 1.89101 * 119.95658 * 180.25368 * 20 19 18 22 22 C 1.38339 * 120.09046 * 0.22412 * 20 19 18 23 23 C 1.38140 * 120.04805 * 0.03045 * 22 20 19 24 24 H 1.09005 * 109.46891 * 301.44654 * 3 2 1 25 25 H 1.09003 * 109.47047 * 181.44601 * 3 2 1 26 26 H 0.96998 * 120.00437 * 179.97438 * 8 7 5 27 27 H 1.08999 * 109.47181 * 59.99640 * 15 13 4 28 28 H 1.09004 * 109.46853 * 300.00080 * 15 13 4 29 29 H 1.08001 * 120.02345 * 359.97438 * 18 17 16 30 30 H 1.08002 * 119.98215 * 179.76384 * 19 18 17 31 31 H 1.08008 * 119.97542 * 180.02562 * 22 20 19 32 32 H 1.08000 * 120.02287 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0967 -0.6593 -1.2131 5 6 3.4384 -1.9867 -1.1812 6 1 4.0549 -2.4045 -1.9633 7 6 2.9914 -2.7943 -0.1427 8 7 1.9376 -2.4404 0.5581 9 14 3.8884 -4.3833 0.2573 10 1 5.0340 -4.5525 -0.6724 11 1 4.3879 -4.3315 1.6547 12 1 2.9560 -5.5293 0.1070 13 6 3.2104 0.0384 -2.3606 14 8 3.6154 -0.5079 -3.3650 15 6 2.8344 1.4973 -2.3959 16 8 3.0403 2.0106 -3.7135 17 6 2.7465 3.3218 -3.9178 18 6 2.2753 4.0995 -2.8701 19 6 1.9723 5.4306 -3.0811 20 6 2.1485 5.9909 -4.3337 21 35 1.7398 7.8152 -4.6180 22 6 2.6238 5.2186 -5.3784 23 6 2.9230 3.8858 -5.1729 24 1 2.9716 -0.5353 0.8768 25 1 2.9709 1.0282 0.0259 26 1 1.6253 -3.0044 1.2829 27 1 3.4542 2.0494 -1.6894 28 1 1.7850 1.6087 -2.1228 29 1 2.1411 3.6633 -1.8912 30 1 1.6018 6.0355 -2.2667 31 1 2.7610 5.6581 -6.3554 32 1 3.2944 3.2833 -5.9887 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060859799.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:18 Heat of formation + Delta-G solvation = 1.491911 kcal Electronic energy + Delta-G solvation = -20175.868117 eV Core-core repulsion = 16763.231132 eV Total energy + Delta-G solvation = -3412.636985 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -40.31201 -38.91105 -37.33780 -35.86579 -34.46831 -32.13530 -31.90654 -31.31512 -29.23048 -27.99927 -27.41899 -24.71392 -22.98582 -21.99439 -19.59451 -18.44558 -18.08672 -16.75740 -16.42506 -16.01249 -15.79022 -15.69483 -14.82265 -14.50940 -14.24106 -13.75131 -13.67163 -13.38246 -13.16179 -12.93840 -12.43942 -12.12931 -11.86847 -11.80070 -11.53115 -11.37615 -11.23378 -11.10193 -10.73845 -10.50195 -10.45164 -10.42699 -10.35478 -9.41348 -9.26235 -8.77219 -8.22325 -8.20873 -6.64119 -4.14181 1.04855 1.10968 1.51981 2.91595 3.00682 3.17382 3.24701 3.38989 3.48212 3.65149 3.80810 4.02726 4.52463 4.62767 4.71017 4.75916 4.96298 4.99622 5.13502 5.23411 5.27362 5.35569 5.47513 5.74945 5.83457 5.88594 6.05738 6.14710 6.33805 6.43916 7.28769 7.35470 7.72873 8.12638 8.57122 8.83489 9.01724 9.52415 10.42039 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.032546 B = 0.002413 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.110903 B =11598.791546 C =12243.520501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C 0.240 3.760 3 C 0.217 3.783 4 N -0.436 5.436 5 C -0.314 4.314 6 H 0.112 0.888 7 C 0.034 3.966 8 N -0.875 5.875 9 Si 0.930 3.070 10 H -0.265 1.265 11 H -0.278 1.278 12 H -0.282 1.282 13 C 0.455 3.545 14 O -0.549 6.549 15 C 0.044 3.956 16 O -0.279 6.279 17 C 0.156 3.844 18 C -0.208 4.208 19 C -0.047 4.047 20 C -0.137 4.137 21 Br -0.061 7.061 22 C -0.051 4.051 23 C -0.148 4.148 24 H 0.133 0.867 25 H 0.083 0.917 26 H 0.275 0.725 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.139 0.861 30 H 0.134 0.866 31 H 0.137 0.863 32 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.358 19.137 -4.003 19.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.144 5.144 2 C -0.079 4.079 3 C 0.090 3.910 4 N -0.158 5.158 5 C -0.440 4.440 6 H 0.130 0.870 7 C -0.171 4.171 8 N -0.514 5.514 9 Si 0.756 3.244 10 H -0.190 1.190 11 H -0.203 1.203 12 H -0.208 1.208 13 C 0.242 3.758 14 O -0.430 6.430 15 C -0.035 4.035 16 O -0.190 6.190 17 C 0.108 3.892 18 C -0.228 4.228 19 C -0.067 4.067 20 C -0.217 4.217 21 Br 0.024 6.976 22 C -0.070 4.070 23 C -0.167 4.167 24 H 0.150 0.850 25 H 0.101 0.899 26 H 0.086 0.914 27 H 0.102 0.898 28 H 0.099 0.901 29 H 0.156 0.844 30 H 0.152 0.848 31 H 0.155 0.845 32 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.719 19.283 -4.601 19.837 hybrid contribution 0.524 -1.221 0.785 1.543 sum 1.244 18.061 -3.816 18.502 Atomic orbital electron populations 1.80932 1.13483 1.11608 1.08409 1.29289 0.95348 0.90488 0.92774 1.18815 0.81724 0.97387 0.93099 1.43561 1.56673 1.10180 1.05400 1.19793 1.30060 0.83213 1.10978 0.87040 1.25316 0.94900 0.99782 0.97070 1.69852 1.19704 1.39958 1.21842 0.85795 0.79574 0.80503 0.78497 1.18954 1.20320 1.20781 1.19495 0.85386 0.86826 0.84092 1.90604 1.48926 1.70710 1.32731 1.22731 1.01860 0.95895 0.83023 1.86230 1.80385 1.21002 1.31371 1.19304 0.92178 0.83659 0.94037 1.21349 1.06907 0.94818 0.99721 1.20871 0.96039 0.94413 0.95388 1.21564 1.11498 0.91444 0.97162 1.96664 1.93755 1.10132 1.97083 1.20879 0.95527 0.92503 0.98134 1.20470 1.05616 0.94780 0.95863 0.84956 0.89893 0.91445 0.89773 0.90119 0.84365 0.84823 0.84482 0.84022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -10.45 18.54 42.16 0.78 -9.67 16 2 C 0.24 4.93 12.95 -20.76 -0.27 4.66 16 3 C 0.22 3.93 4.91 -6.83 -0.03 3.90 16 4 N -0.44 -9.62 2.60 -117.94 -0.31 -9.93 16 5 C -0.31 -7.73 9.32 -14.93 -0.14 -7.87 16 6 H 0.11 2.92 7.39 -52.49 -0.39 2.53 16 7 C 0.03 0.79 4.87 -17.47 -0.08 0.70 16 8 N -0.88 -21.01 9.48 55.50 0.53 -20.49 16 9 Si 0.93 18.80 29.60 -169.99 -5.03 13.77 16 10 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 11 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 12 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 13 C 0.45 10.00 7.64 -10.99 -0.08 9.91 16 14 O -0.55 -14.39 16.15 -14.36 -0.23 -14.62 16 15 C 0.04 0.73 3.82 36.00 0.14 0.86 16 16 O -0.28 -4.89 9.67 -39.38 -0.38 -5.27 16 17 C 0.16 2.22 6.69 -39.22 -0.26 1.96 16 18 C -0.21 -2.54 9.04 -39.44 -0.36 -2.90 16 19 C -0.05 -0.52 9.78 -39.58 -0.39 -0.91 16 20 C -0.14 -1.52 6.22 -39.50 -0.25 -1.76 16 21 Br -0.06 -0.60 33.70 -68.01 -2.29 -2.89 16 22 C -0.05 -0.55 9.78 -39.58 -0.39 -0.94 16 23 C -0.15 -1.85 9.99 -39.44 -0.39 -2.24 16 24 H 0.13 2.45 6.46 -51.93 -0.34 2.12 16 25 H 0.08 1.06 6.68 -51.93 -0.35 0.72 16 26 H 0.27 6.39 8.31 -40.82 -0.34 6.05 16 27 H 0.08 1.09 6.92 -51.93 -0.36 0.73 16 28 H 0.08 1.28 7.04 -51.93 -0.37 0.91 16 29 H 0.14 1.48 6.30 -52.49 -0.33 1.15 16 30 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 31 H 0.14 1.18 8.06 -52.48 -0.42 0.75 16 32 H 0.14 1.64 8.06 -52.49 -0.42 1.21 16 LS Contribution 309.34 15.07 4.66 4.66 Total: -1.00 -30.30 309.34 -7.31 -37.61 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -2.53 Total: 1.44 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: -2.51 Total: 5.38 kcal Atomic # 7 Polarization: -41.08 SS G_CDS: 1.00 Total: -40.08 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -0.61 Total: -19.89 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.77 kcal Atomic # 35 Polarization: -0.60 SS G_CDS: -2.29 Total: -2.89 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.30 -7.31 -37.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060859799.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.098 kcal (2) G-P(sol) polarization free energy of solvation -30.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds